Wall clock time and date at job start Tue Mar 31 2020 10:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37976 * 120.07890 * 2 1 4 4 C 1.38339 * 120.14878 * 179.97438 * 3 2 1 5 5 C 1.38377 * 120.29291 * 0.02562 * 4 3 2 6 6 C 1.37939 * 120.14276 * 0.02562 * 5 4 3 7 7 C 1.39566 * 120.07253 * 180.27865 * 2 1 3 8 8 C 1.47843 * 120.14279 * 0.02562 * 7 2 1 9 9 O 1.21552 * 120.00026 * 6.51821 * 8 7 2 10 10 N 1.34778 * 119.99831 * 186.52443 * 8 7 2 11 11 C 1.46504 * 120.00055 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.88367 * 334.66252 * 11 10 8 13 13 C 1.53944 * 113.66217 * 106.01070 * 11 10 8 14 14 C 1.54247 * 87.19162 * 89.78823 * 13 11 10 15 15 H 1.09002 * 113.66975 * 139.20029 * 14 13 11 16 16 N 1.46496 * 113.74480 * 270.24814 * 14 13 11 17 17 C 1.36935 * 120.00201 * 252.22138 * 16 14 13 18 18 H 1.08005 * 120.00069 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00238 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47097 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46853 * 120.00314 * 21 19 17 24 24 H 1.48500 * 109.47053 * 239.99972 * 21 19 17 25 25 C 1.52908 * 113.65936 * 203.32042 * 11 10 8 26 26 C 1.52906 * 121.13398 * 144.70819 * 25 11 10 27 27 C 1.53951 * 86.78322 * 209.37364 * 26 25 11 28 28 C 1.52903 * 121.14011 * 36.14319 * 25 11 10 29 29 H 1.08994 * 109.47425 * 96.57456 * 1 2 3 30 30 H 1.09003 * 109.47233 * 216.58031 * 1 2 3 31 31 H 1.09008 * 109.46509 * 336.57599 * 1 2 3 32 32 H 1.08004 * 119.92397 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.85307 * 179.97438 * 4 3 2 34 34 H 1.07995 * 119.93159 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.07105 * 180.02562 * 6 5 4 36 36 H 0.96995 * 119.99809 * 359.97438 * 10 8 7 37 37 H 1.09006 * 113.57907 * 204.34400 * 13 11 10 38 38 H 1.08995 * 113.58417 * 335.13033 * 13 11 10 39 39 H 0.97001 * 119.99881 * 72.22607 * 16 14 13 40 40 H 0.96997 * 119.99790 * 179.97438 * 20 19 17 41 41 H 1.09001 * 113.66732 * 323.84603 * 26 25 11 42 42 H 1.09006 * 113.66320 * 94.90788 * 26 25 11 43 43 H 1.08997 * 113.58246 * 270.12956 * 27 26 25 44 44 H 1.08998 * 113.57926 * 139.33414 * 27 26 25 45 45 H 1.09001 * 113.66411 * 265.08754 * 28 25 11 46 46 H 1.09001 * 113.66686 * 36.14720 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1956 0.0005 5 6 4.2813 0.0017 0.0005 6 6 3.6022 -1.1990 -0.0005 7 6 2.2063 -1.2078 -0.0059 8 6 1.4719 -2.4909 -0.0127 9 8 0.2624 -2.4982 -0.1327 10 7 2.1436 -3.6525 0.1143 11 6 1.4160 -4.9240 0.1070 12 1 0.3802 -4.8215 0.4306 13 6 1.5792 -5.7217 -1.1995 14 6 2.8091 -6.3883 -0.5498 15 1 2.8857 -7.4567 -0.7521 16 7 4.0641 -5.6717 -0.7898 17 6 4.9965 -6.1918 -1.6472 18 1 4.8065 -7.1303 -2.1469 19 6 6.1858 -5.5130 -1.8742 20 7 6.4176 -4.3696 -1.2648 21 14 7.4581 -6.2230 -3.0433 22 1 6.9603 -7.5087 -3.5951 23 1 7.6970 -5.2673 -4.1545 24 1 8.7280 -6.4571 -2.3100 25 6 2.1651 -6.0636 0.7985 26 6 1.4167 -7.1329 1.5952 27 6 2.6851 -7.2532 2.4594 28 6 3.0184 -5.8094 2.0415 29 1 -0.3634 -0.1177 -1.0208 30 1 -0.3634 -0.8253 0.6124 31 1 -0.3632 0.9431 0.4086 32 1 1.6585 2.1293 -0.0004 33 1 4.1183 2.1330 0.0001 34 1 5.3613 0.0098 0.0005 35 1 4.1493 -2.1302 -0.0001 36 1 3.1089 -3.6466 0.2098 37 1 0.7595 -6.4138 -1.3931 38 1 1.8223 -5.1011 -2.0619 39 1 4.2346 -4.8287 -0.3412 40 1 7.2488 -3.8954 -1.4231 41 1 0.5525 -6.7495 2.1376 42 1 1.1930 -8.0310 1.0193 43 1 3.3974 -7.9900 2.0882 44 1 2.4785 -7.3623 3.5240 45 1 4.0742 -5.6502 1.8223 46 1 2.6044 -5.0540 2.7095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078542016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:15 Heat of formation + Delta-G solvation = 47.568457 kcal Electronic energy + Delta-G solvation = -26949.631868 eV Core-core repulsion = 23419.805011 eV Total energy + Delta-G solvation = -3529.826856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70820 -39.63166 -37.79293 -35.27650 -33.80433 -32.70163 -32.18644 -30.79321 -29.74681 -26.89675 -25.46109 -24.77747 -24.15216 -23.60649 -22.40462 -21.27207 -20.40927 -19.92553 -18.34732 -17.13638 -17.03148 -15.89557 -15.60803 -15.18053 -15.04851 -14.98817 -14.48442 -14.47197 -14.17525 -13.67836 -13.22194 -13.04317 -12.99124 -12.88820 -12.46191 -12.12291 -11.95722 -11.90364 -11.86434 -11.59151 -11.43848 -11.34581 -10.96044 -10.90145 -10.88280 -10.67764 -10.19571 -10.07754 -9.80093 -9.72947 -9.41806 -9.25699 -8.92443 -8.86062 -8.61371 -8.36202 -7.09939 -5.91495 -3.19194 1.05200 1.51509 3.15019 3.36566 3.42731 3.44626 3.47739 4.03987 4.46136 4.76797 4.87344 4.94406 5.01164 5.02386 5.06989 5.17521 5.20888 5.32624 5.40941 5.41967 5.60951 5.65980 5.79555 5.83779 5.88776 5.92576 5.96261 6.00699 6.01155 6.03123 6.09219 6.16297 6.25956 6.35151 6.39128 6.47875 6.51713 6.61352 6.62420 6.69227 6.73400 6.80278 6.95168 7.05383 7.13230 7.62819 7.94170 8.28354 8.58570 9.39322 9.93074 10.27190 11.31541 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.005485 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.706503 B = 5103.605288 C = 7064.768639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.028 4.028 3 C -0.140 4.140 4 C -0.094 4.094 5 C -0.131 4.131 6 C -0.069 4.069 7 C -0.140 4.140 8 C 0.560 3.440 9 O -0.546 6.546 10 N -0.693 5.693 11 C 0.139 3.861 12 H 0.091 0.909 13 C -0.185 4.185 14 C 0.191 3.809 15 H 0.067 0.933 16 N -0.699 5.699 17 C -0.241 4.241 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 C -0.130 4.130 26 C -0.106 4.106 27 C -0.134 4.134 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.406 0.594 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.378 0.622 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 5.397 6.446 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.029 4.029 3 C -0.158 4.158 4 C -0.113 4.113 5 C -0.149 4.149 6 C -0.088 4.088 7 C -0.143 4.143 8 C 0.348 3.652 9 O -0.426 6.426 10 N -0.345 5.345 11 C 0.033 3.967 12 H 0.109 0.891 13 C -0.228 4.228 14 C 0.078 3.922 15 H 0.085 0.915 16 N -0.338 5.338 17 C -0.372 4.372 18 H 0.092 0.908 19 C -0.205 4.205 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.132 4.132 26 C -0.144 4.144 27 C -0.171 4.171 28 C -0.164 4.164 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.245 0.755 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.214 0.786 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.057 5.271 6.230 12.191 hybrid contribution 1.434 0.068 -0.621 1.564 sum -7.623 5.339 5.610 10.867 Atomic orbital electron populations 1.21038 0.90321 1.02492 1.03498 1.20008 0.96651 0.91554 0.94696 1.20975 0.94260 0.97227 1.03379 1.21319 0.94209 0.98192 0.97553 1.21133 1.00495 0.92022 1.01274 1.21595 0.92920 0.99584 0.94706 1.19849 0.93739 0.93175 1.07582 1.18245 0.86970 0.83763 0.76227 1.90661 1.13804 1.87371 1.50732 1.45688 1.11401 1.04792 1.72586 1.21625 0.95534 0.81947 0.97581 0.89125 1.24322 1.00847 1.00007 0.97587 1.20943 0.85979 0.95632 0.89627 0.91526 1.42102 1.14549 1.24584 1.52607 1.19317 0.95797 1.04140 1.17900 0.90816 1.24709 0.98183 0.97193 1.00456 1.69609 1.25992 1.16117 1.46358 0.86092 0.81499 0.78130 0.80289 1.20543 1.21868 1.21840 1.23563 0.97935 0.96183 0.95519 1.22510 0.96753 0.97746 0.97413 1.22749 0.97766 0.97916 0.98712 1.22578 1.01210 0.96351 0.96311 0.90923 0.88772 0.92902 0.85829 0.85937 0.85294 0.84424 0.75470 0.90432 0.90979 0.78626 0.93412 0.90325 0.91351 0.90067 0.92195 0.90216 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 8.71 36.00 0.31 -1.29 16 2 C -0.03 -0.42 5.91 -104.22 -0.62 -1.03 16 3 C -0.14 -1.77 9.66 -39.64 -0.38 -2.15 16 4 C -0.09 -1.16 10.04 -39.49 -0.40 -1.56 16 5 C -0.13 -1.85 10.03 -39.64 -0.40 -2.25 16 6 C -0.07 -1.13 9.53 -39.19 -0.37 -1.50 16 7 C -0.14 -2.34 5.87 -104.97 -0.62 -2.96 16 8 C 0.56 10.17 7.70 -12.33 -0.09 10.07 16 9 O -0.55 -10.62 12.98 5.32 0.07 -10.55 16 10 N -0.69 -12.33 4.88 -54.32 -0.27 -12.59 16 11 C 0.14 2.36 4.09 -67.48 -0.28 2.09 16 12 H 0.09 1.55 7.50 -51.93 -0.39 1.16 16 13 C -0.19 -3.33 7.71 -25.59 -0.20 -3.52 16 14 C 0.19 3.63 4.37 -67.33 -0.29 3.33 16 15 H 0.07 1.28 8.10 -51.93 -0.42 0.85 16 16 N -0.70 -16.04 4.74 -52.84 -0.25 -16.29 16 17 C -0.24 -6.25 9.97 -15.06 -0.15 -6.40 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -25.68 13.06 55.49 0.72 -24.96 16 21 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 C -0.13 -2.07 0.78 -154.71 -0.12 -2.19 16 26 C -0.11 -1.40 7.84 -26.28 -0.21 -1.61 16 27 C -0.13 -1.82 8.08 -25.74 -0.21 -2.03 16 28 C -0.13 -1.99 7.24 -26.28 -0.19 -2.18 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.45 5.89 -51.93 -0.31 1.14 16 31 H 0.05 0.58 8.04 -51.92 -0.42 0.16 16 32 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.14 2.42 6.46 -52.48 -0.34 2.08 16 36 H 0.41 7.53 4.22 -40.82 -0.17 7.35 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.38 8.89 5.16 -40.82 -0.21 8.68 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -28.47 367.96 -10.35 -38.82 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -6.85 Total: 19.11 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -4.30 Total: -15.53 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.21 Total: -53.84 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.47 -10.35 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078542016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.387 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds