Wall clock time and date at job start Tue Mar 31 2020 10:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37976 * 120.07890 * 2 1 4 4 C 1.38339 * 120.14878 * 179.97438 * 3 2 1 5 5 C 1.38377 * 120.29291 * 0.02562 * 4 3 2 6 6 C 1.37939 * 120.14276 * 0.02562 * 5 4 3 7 7 C 1.39566 * 120.07253 * 180.27865 * 2 1 3 8 8 C 1.47843 * 120.14279 * 0.02562 * 7 2 1 9 9 O 1.21552 * 120.00026 * 6.51821 * 8 7 2 10 10 N 1.34778 * 119.99831 * 186.52443 * 8 7 2 11 11 C 1.46504 * 120.00055 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.88367 * 334.66252 * 11 10 8 13 13 C 1.53944 * 113.66217 * 106.01070 * 11 10 8 14 14 C 1.54247 * 87.19162 * 89.78823 * 13 11 10 15 15 H 1.09002 * 113.66975 * 139.20029 * 14 13 11 16 16 N 1.46496 * 113.74480 * 270.24814 * 14 13 11 17 17 C 1.36935 * 120.00201 * 252.22138 * 16 14 13 18 18 H 1.08005 * 120.00069 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00238 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47097 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46853 * 120.00314 * 21 19 17 24 24 H 1.48500 * 109.47053 * 239.99972 * 21 19 17 25 25 C 1.52908 * 113.65936 * 203.32042 * 11 10 8 26 26 C 1.52906 * 121.13398 * 144.70819 * 25 11 10 27 27 C 1.53951 * 86.78322 * 209.37364 * 26 25 11 28 28 C 1.52903 * 121.14011 * 36.14319 * 25 11 10 29 29 H 1.08994 * 109.47425 * 96.57456 * 1 2 3 30 30 H 1.09003 * 109.47233 * 216.58031 * 1 2 3 31 31 H 1.09008 * 109.46509 * 336.57599 * 1 2 3 32 32 H 1.08004 * 119.92397 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.85307 * 179.97438 * 4 3 2 34 34 H 1.07995 * 119.93159 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.07105 * 180.02562 * 6 5 4 36 36 H 0.96995 * 119.99809 * 359.97438 * 10 8 7 37 37 H 1.09006 * 113.57907 * 204.34400 * 13 11 10 38 38 H 1.08995 * 113.58417 * 335.13033 * 13 11 10 39 39 H 0.97001 * 119.99881 * 72.22607 * 16 14 13 40 40 H 0.96997 * 119.99790 * 179.97438 * 20 19 17 41 41 H 1.09001 * 113.66732 * 323.84603 * 26 25 11 42 42 H 1.09006 * 113.66320 * 94.90788 * 26 25 11 43 43 H 1.08997 * 113.58246 * 270.12956 * 27 26 25 44 44 H 1.08998 * 113.57926 * 139.33414 * 27 26 25 45 45 H 1.09001 * 113.66411 * 265.08754 * 28 25 11 46 46 H 1.09001 * 113.66686 * 36.14720 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1956 0.0005 5 6 4.2813 0.0017 0.0005 6 6 3.6022 -1.1990 -0.0005 7 6 2.2063 -1.2078 -0.0059 8 6 1.4719 -2.4909 -0.0127 9 8 0.2624 -2.4982 -0.1327 10 7 2.1436 -3.6525 0.1143 11 6 1.4160 -4.9240 0.1070 12 1 0.3802 -4.8215 0.4306 13 6 1.5792 -5.7217 -1.1995 14 6 2.8091 -6.3883 -0.5498 15 1 2.8857 -7.4567 -0.7521 16 7 4.0641 -5.6717 -0.7898 17 6 4.9965 -6.1918 -1.6472 18 1 4.8065 -7.1303 -2.1469 19 6 6.1858 -5.5130 -1.8742 20 7 6.4176 -4.3696 -1.2648 21 14 7.4581 -6.2230 -3.0433 22 1 6.9603 -7.5087 -3.5951 23 1 7.6970 -5.2673 -4.1545 24 1 8.7280 -6.4571 -2.3100 25 6 2.1651 -6.0636 0.7985 26 6 1.4167 -7.1329 1.5952 27 6 2.6851 -7.2532 2.4594 28 6 3.0184 -5.8094 2.0415 29 1 -0.3634 -0.1177 -1.0208 30 1 -0.3634 -0.8253 0.6124 31 1 -0.3632 0.9431 0.4086 32 1 1.6585 2.1293 -0.0004 33 1 4.1183 2.1330 0.0001 34 1 5.3613 0.0098 0.0005 35 1 4.1493 -2.1302 -0.0001 36 1 3.1089 -3.6466 0.2098 37 1 0.7595 -6.4138 -1.3931 38 1 1.8223 -5.1011 -2.0619 39 1 4.2346 -4.8287 -0.3412 40 1 7.2488 -3.8954 -1.4231 41 1 0.5525 -6.7495 2.1376 42 1 1.1930 -8.0310 1.0193 43 1 3.3974 -7.9900 2.0882 44 1 2.4785 -7.3623 3.5240 45 1 4.0742 -5.6502 1.8223 46 1 2.6044 -5.0540 2.7095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078542016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:14 Heat of formation + Delta-G solvation = 33.138563 kcal Electronic energy + Delta-G solvation = -26950.257595 eV Core-core repulsion = 23419.805011 eV Total energy + Delta-G solvation = -3530.452584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07798 -40.87796 -39.05614 -36.68606 -35.49610 -34.15127 -33.40010 -32.21346 -31.38092 -28.01662 -26.78536 -26.38772 -25.49644 -24.97024 -23.85264 -22.49908 -21.69519 -21.27900 -19.85191 -18.85557 -18.38497 -17.23998 -16.73926 -16.69971 -16.40899 -16.19660 -16.13966 -15.75509 -15.56714 -15.16604 -14.78537 -14.48296 -14.29138 -14.04691 -13.77586 -13.46380 -13.30189 -13.14742 -13.02203 -12.94686 -12.85333 -12.70620 -12.65385 -12.49288 -12.13213 -12.00226 -11.93922 -11.83235 -11.28722 -11.15969 -10.89893 -10.66673 -10.61282 -10.06034 -9.82460 -9.61941 -9.00160 -7.95595 -5.22500 -0.12062 0.39860 1.46800 1.48485 1.56804 1.84978 2.11646 2.55023 2.85887 3.36922 3.39097 3.60169 3.72492 3.82287 3.87115 3.91197 3.96480 4.01657 4.16630 4.17625 4.25974 4.40539 4.49093 4.57305 4.65406 4.74784 4.78725 4.83086 4.85635 4.86919 4.90665 4.96782 5.02561 5.10717 5.12644 5.18506 5.23985 5.29501 5.39151 5.51383 5.52518 5.56984 5.59938 5.62942 5.71241 5.98094 6.27695 6.50882 7.16197 7.34435 8.06129 8.30838 9.27266 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.005485 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.706503 B = 5103.605288 C = 7064.768639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.040 4.040 3 C -0.132 4.132 4 C -0.082 4.082 5 C -0.140 4.140 6 C -0.088 4.088 7 C -0.165 4.165 8 C 0.553 3.447 9 O -0.564 6.564 10 N -0.696 5.696 11 C 0.137 3.863 12 H 0.096 0.904 13 C -0.178 4.178 14 C 0.176 3.824 15 H 0.067 0.933 16 N -0.709 5.709 17 C -0.243 4.243 18 H 0.074 0.926 19 C -0.064 4.064 20 N -0.958 5.958 21 Si 0.967 3.033 22 H -0.271 1.271 23 H -0.298 1.298 24 H -0.293 1.293 25 C -0.121 4.121 26 C -0.092 4.092 27 C -0.126 4.126 28 C -0.129 4.129 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.401 0.599 37 H 0.105 0.895 38 H 0.039 0.961 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 6.184 7.160 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.041 4.041 3 C -0.150 4.150 4 C -0.099 4.099 5 C -0.158 4.158 6 C -0.107 4.107 7 C -0.168 4.168 8 C 0.343 3.657 9 O -0.446 6.446 10 N -0.346 5.346 11 C 0.032 3.968 12 H 0.114 0.886 13 C -0.220 4.220 14 C 0.066 3.934 15 H 0.085 0.915 16 N -0.348 5.348 17 C -0.375 4.375 18 H 0.092 0.908 19 C -0.257 4.257 20 N -0.608 5.608 21 Si 0.797 3.203 22 H -0.195 1.195 23 H -0.225 1.225 24 H -0.221 1.221 25 C -0.123 4.123 26 C -0.130 4.130 27 C -0.163 4.163 28 C -0.167 4.167 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.156 0.844 35 H 0.129 0.871 36 H 0.239 0.761 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.207 0.793 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.065 0.935 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.160 6.021 6.949 13.703 hybrid contribution 1.741 -0.133 -0.846 1.940 sum -8.419 5.889 6.103 11.950 Atomic orbital electron populations 1.20968 0.89636 1.03354 1.02807 1.20299 0.97354 0.91703 0.94722 1.21400 0.94565 0.97654 1.01365 1.21742 0.94340 0.98775 0.95083 1.21354 1.01175 0.92075 1.01187 1.21464 0.92971 0.99622 0.96631 1.19872 0.93872 0.93281 1.09733 1.18612 0.86941 0.84432 0.75734 1.90637 1.14395 1.87749 1.51810 1.45774 1.11118 1.05253 1.72461 1.21691 0.95863 0.82005 0.97216 0.88622 1.24263 1.01029 1.00057 0.96661 1.21144 0.84932 0.95170 0.92199 0.91528 1.42186 1.15566 1.24735 1.52287 1.19616 0.96301 1.03884 1.17660 0.90785 1.25391 1.00058 0.97876 1.02397 1.69744 1.26144 1.17145 1.47749 0.85176 0.79246 0.77612 0.78290 1.19523 1.22519 1.22067 1.23459 0.97982 0.96562 0.94298 1.22540 0.96932 0.96962 0.96533 1.22707 0.97597 0.95666 1.00348 1.22575 0.99150 0.98434 0.96564 0.91642 0.90900 0.89664 0.82143 0.82048 0.84396 0.87070 0.76092 0.87692 0.94187 0.79266 0.93942 0.88201 0.89932 0.90977 0.89746 0.93464 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.93 8.71 71.24 0.62 -2.31 16 2 C -0.04 -1.14 5.91 -19.61 -0.12 -1.26 16 3 C -0.13 -2.94 9.66 22.23 0.21 -2.73 16 4 C -0.08 -1.77 10.04 22.33 0.22 -1.55 16 5 C -0.14 -3.90 10.03 22.23 0.22 -3.68 16 6 C -0.09 -3.00 9.53 22.53 0.21 -2.79 16 7 C -0.16 -5.66 5.87 -20.09 -0.12 -5.78 16 8 C 0.55 20.97 7.70 86.79 0.67 21.64 16 9 O -0.56 -22.58 12.98 -3.88 -0.05 -22.64 16 10 N -0.70 -26.00 4.88 -444.03 -2.17 -28.16 16 11 C 0.14 4.73 4.09 45.28 0.19 4.92 16 12 H 0.10 3.22 7.50 -2.39 -0.02 3.20 16 13 C -0.18 -6.46 7.71 31.33 0.24 -6.22 16 14 C 0.18 6.80 4.37 45.39 0.20 7.00 16 15 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 16 N -0.71 -33.79 4.74 -321.08 -1.52 -35.32 16 17 C -0.24 -12.96 9.97 84.03 0.84 -12.12 16 18 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 20 N -0.96 -54.72 13.06 21.65 0.28 -54.44 16 21 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 C -0.12 -3.81 0.78 -52.31 -0.04 -3.85 16 26 C -0.09 -2.19 7.84 30.88 0.24 -1.95 16 27 C -0.13 -3.20 8.08 31.23 0.25 -2.94 16 28 C -0.13 -4.05 7.24 30.89 0.22 -3.83 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 2.25 5.89 -2.39 -0.01 2.23 16 31 H 0.08 1.64 8.04 -2.38 -0.02 1.62 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.11 4.31 6.46 -2.91 -0.02 4.30 16 36 H 0.40 15.99 4.22 -92.71 -0.39 15.60 16 37 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.37 18.54 5.16 -92.71 -0.48 18.06 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.05 1.79 7.58 -2.39 -0.02 1.77 16 46 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -63.89 367.96 3.23 -60.65 By element: Atomic # 1 Polarization: 53.23 SS G_CDS: 0.12 Total: 53.35 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 4.54 Total: -20.49 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -3.41 Total: -117.92 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -63.89 3.23 -60.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078542016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.792 kcal (2) G-P(sol) polarization free energy of solvation -63.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds