Wall clock time and date at job start Tue Mar 31 2020 10:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38241 * 119.99901 * 2 1 4 4 C 1.38232 * 119.99636 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00252 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99820 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46614 * 90.00589 * 6 5 4 8 8 O 1.21277 * 120.00763 * 359.97438 * 7 6 5 9 9 N 1.34786 * 120.00001 * 180.02562 * 7 6 5 10 10 C 1.47808 * 135.00762 * 359.97438 * 9 7 6 11 11 C 1.54655 * 85.78695 * 153.81551 * 10 9 7 12 12 H 1.09001 * 115.01239 * 139.91416 * 11 10 9 13 13 C 1.53010 * 110.83946 * 270.22793 * 11 10 9 14 14 C 1.52616 * 109.52277 * 143.76730 * 13 11 10 15 15 N 1.46618 * 108.27122 * 301.24603 * 14 13 11 16 16 C 1.36939 * 119.88746 * 237.29005 * 15 14 13 17 17 H 1.07995 * 120.00040 * 25.08166 * 16 15 14 18 18 C 1.38813 * 119.99621 * 205.34982 * 16 15 14 19 19 N 1.31615 * 120.00169 * 13.20097 * 18 16 15 20 20 Si 1.86798 * 119.99854 * 193.19614 * 18 16 15 21 21 H 1.48500 * 109.47307 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47282 * 120.00191 * 20 18 16 23 23 H 1.48502 * 109.47143 * 240.00360 * 20 18 16 24 24 C 1.45675 * 120.21938 * 57.00969 * 15 14 13 25 25 C 1.46809 * 135.01457 * 180.02562 * 9 7 6 26 26 H 1.09003 * 110.91693 * 94.53925 * 25 9 7 27 27 C 1.38236 * 119.99941 * 0.25798 * 5 4 3 28 28 C 1.38227 * 120.00150 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46883 * 89.99568 * 1 2 3 30 30 H 1.08997 * 109.46982 * 209.99541 * 1 2 3 31 31 H 1.09001 * 109.47030 * 329.99671 * 1 2 3 32 32 H 1.07997 * 120.00041 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.99990 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47154 * 330.00756 * 6 5 4 35 35 H 1.08999 * 109.47003 * 210.00222 * 6 5 4 36 36 H 1.08998 * 113.81920 * 39.60301 * 10 9 7 37 37 H 1.09002 * 113.93476 * 268.04465 * 10 9 7 38 38 H 1.08999 * 109.48150 * 263.88830 * 13 11 10 39 39 H 1.09008 * 109.47358 * 23.89786 * 13 11 10 40 40 H 1.08998 * 109.65701 * 181.51361 * 14 13 11 41 41 H 1.09008 * 109.59323 * 60.93431 * 14 13 11 42 42 H 0.96994 * 120.00409 * 179.97438 * 19 18 16 43 43 H 1.08997 * 108.71197 * 82.02355 * 24 15 14 44 44 H 1.08997 * 108.71477 * 200.16950 * 24 15 14 45 45 H 1.07996 * 119.99720 * 179.72396 * 27 5 4 46 46 H 1.08004 * 120.00300 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0001 0.0005 7 6 6.2809 -0.0001 1.4214 8 8 5.4928 0.0003 2.3432 9 7 7.6060 0.0005 1.6678 10 6 8.8248 0.0007 0.8315 11 6 9.5140 0.6818 2.0369 12 1 10.5280 0.3388 2.2422 13 6 9.3942 2.2044 1.9435 14 6 9.2121 2.7883 3.3417 15 7 8.0059 2.1999 3.9321 16 6 6.9893 3.0120 4.3590 17 1 6.8643 3.9936 3.9264 18 6 6.1228 2.5756 5.3518 19 7 6.4202 1.5085 6.0626 20 14 4.5346 3.5029 5.6791 21 1 4.4353 4.6578 4.7509 22 1 3.3785 2.5957 5.4651 23 1 4.5270 3.9921 7.0812 24 6 7.8827 0.7541 4.0604 25 6 8.4372 0.0001 2.8780 26 1 8.7244 -1.0150 3.1524 27 6 3.5805 -1.1971 -0.0054 28 6 2.1982 -1.1971 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1325 -0.0004 33 1 4.1206 2.1325 0.0001 34 1 6.1420 0.8901 -0.5132 35 1 6.1420 -0.8899 -0.5133 36 1 8.7528 0.6362 -0.0512 37 1 9.2090 -0.9949 0.6095 38 1 10.2984 2.6132 1.4926 39 1 8.5322 2.4640 1.3288 40 1 9.0996 3.8704 3.2753 41 1 10.0793 2.5444 3.9555 42 1 5.8150 1.2038 6.7565 43 1 8.4135 0.4362 4.9578 44 1 6.8282 0.5013 4.1707 45 1 4.1205 -2.1324 -0.0099 46 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084495319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:50 Heat of formation + Delta-G solvation = 49.324326 kcal Electronic energy + Delta-G solvation = -26996.930827 eV Core-core repulsion = 23467.180111 eV Total energy + Delta-G solvation = -3529.750716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.39032 -39.30182 -37.43701 -35.13790 -33.56683 -32.12195 -30.74116 -30.20944 -30.02784 -28.36035 -26.89065 -25.13229 -23.83112 -22.77614 -22.55780 -21.10778 -20.75505 -19.51913 -17.70913 -16.86838 -16.08952 -15.84957 -15.79988 -15.31251 -15.14931 -14.78898 -14.19438 -13.78758 -13.69031 -13.55423 -13.25111 -13.23621 -13.03997 -12.83763 -12.58129 -12.31636 -12.20428 -11.89543 -11.68786 -11.64453 -11.39135 -11.07649 -10.94226 -10.78028 -10.65264 -10.61304 -10.42627 -10.13575 -9.83735 -9.77782 -9.58899 -8.88287 -8.70822 -8.34365 -8.20893 -8.02328 -6.55485 -5.61902 -3.04468 1.48592 1.61986 3.30637 3.34337 3.49353 3.56472 3.58946 3.95506 4.63140 4.75655 4.83576 4.91227 4.95408 5.05209 5.17307 5.18912 5.29273 5.45255 5.50710 5.53408 5.57156 5.59075 5.61477 5.65719 5.68056 5.75994 5.83063 5.87519 5.92798 6.16019 6.18628 6.25065 6.27960 6.37649 6.41069 6.56595 6.59076 6.63093 6.74264 6.79920 6.81222 7.02182 7.19720 7.56116 7.82214 7.99090 8.39075 8.61446 8.88125 9.39544 10.03554 10.51455 11.46365 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.005458 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.198004 B = 5128.571071 C = 6888.723667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.097 4.097 5 C -0.064 4.064 6 C -0.095 4.095 7 C 0.533 3.467 8 O -0.508 6.508 9 N -0.634 5.634 10 C 0.095 3.905 11 C -0.110 4.110 12 H 0.085 0.915 13 C -0.116 4.116 14 C 0.147 3.853 15 N -0.585 5.585 16 C -0.252 4.252 17 H 0.062 0.938 18 C 0.012 3.988 19 N -0.903 5.903 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.292 1.292 24 C 0.167 3.833 25 C 0.124 3.876 26 H 0.070 0.930 27 C -0.103 4.103 28 C -0.122 4.122 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.251 0.749 43 H 0.029 0.971 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -5.253 -16.333 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.115 4.115 5 C -0.064 4.064 6 C -0.135 4.135 7 C 0.321 3.679 8 O -0.382 6.382 9 N -0.372 5.372 10 C -0.028 4.028 11 C -0.129 4.129 12 H 0.103 0.897 13 C -0.156 4.156 14 C 0.020 3.980 15 N -0.307 5.307 16 C -0.382 4.382 17 H 0.080 0.920 18 C -0.187 4.187 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.219 1.219 24 C 0.041 3.959 25 C 0.020 3.980 26 H 0.087 0.913 27 C -0.121 4.121 28 C -0.140 4.140 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.123 0.877 45 H 0.135 0.865 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.869 -5.325 -15.714 16.614 hybrid contribution -0.722 0.258 0.156 0.782 sum -1.590 -5.067 -15.558 16.440 Atomic orbital electron populations 1.20760 0.91531 1.02695 1.01844 1.19860 0.95836 0.93314 1.00316 1.20957 0.94102 0.97425 1.01201 1.20991 0.94216 0.97573 0.98677 1.19284 0.93765 0.93529 0.99829 1.20609 0.92909 1.04221 0.95794 1.19898 0.80445 0.77035 0.90551 1.90805 1.53669 1.47843 1.45877 1.49892 1.03070 1.73860 1.10356 1.23514 0.83843 0.99705 0.95759 1.22858 0.97886 0.96943 0.95260 0.89685 1.21772 1.00271 0.92827 1.00703 1.20645 0.89973 0.96431 0.90911 1.43465 1.14897 1.01118 1.71250 1.19109 1.05888 0.98807 1.14365 0.91981 1.24927 0.99708 0.98044 0.95998 1.69999 1.36170 1.25972 1.22631 0.86266 0.84452 0.79061 0.77217 1.20494 1.21479 1.21917 1.20105 1.03332 0.82658 0.89846 1.22721 0.86993 0.98559 0.89720 0.91254 1.20900 0.94173 0.97219 0.99809 1.20898 0.94026 0.97298 1.01745 0.91514 0.91740 0.91662 0.86271 0.86156 0.88721 0.88936 0.90795 0.90621 0.92750 0.92173 0.92640 0.96314 0.93865 0.95276 0.87670 0.86498 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.09 -1.29 5.88 -104.62 -0.62 -1.90 16 3 C -0.12 -1.75 9.70 -39.58 -0.38 -2.14 16 4 C -0.10 -1.55 9.70 -39.58 -0.38 -1.93 16 5 C -0.06 -1.01 4.37 -104.62 -0.46 -1.47 16 6 C -0.10 -1.40 5.61 -29.03 -0.16 -1.56 16 7 C 0.53 10.52 7.98 -10.98 -0.09 10.43 16 8 O -0.51 -12.90 15.15 5.56 0.08 -12.82 16 9 N -0.63 -11.41 3.34 -173.99 -0.58 -11.99 16 10 C 0.10 1.23 7.97 -3.00 -0.02 1.20 16 11 C -0.11 -1.67 4.39 -89.96 -0.40 -2.07 16 12 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.12 -1.92 5.64 -26.92 -0.15 -2.07 16 14 C 0.15 3.05 6.44 -4.17 -0.03 3.03 16 15 N -0.58 -15.13 3.03 -175.35 -0.53 -15.66 16 16 C -0.25 -7.31 9.54 -15.06 -0.14 -7.45 16 17 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 18 C 0.01 0.35 4.98 -17.43 -0.09 0.27 16 19 N -0.90 -27.97 10.90 55.49 0.60 -27.36 16 20 Si 0.90 23.78 29.57 -169.99 -5.03 18.75 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.87 7.11 56.52 0.40 -7.46 16 23 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 24 C 0.17 4.22 4.60 -5.59 -0.03 4.19 16 25 C 0.12 2.40 4.23 -69.57 -0.29 2.10 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 27 C -0.10 -1.52 9.70 -39.58 -0.38 -1.91 16 28 C -0.12 -1.68 9.70 -39.59 -0.38 -2.07 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 34 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 36 H 0.07 0.82 7.97 -51.93 -0.41 0.41 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.08 7.69 -51.92 -0.40 0.68 16 40 H 0.06 1.14 7.88 -51.93 -0.41 0.73 16 41 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.03 0.80 7.96 -51.93 -0.41 0.39 16 44 H 0.11 3.15 4.85 -51.93 -0.25 2.90 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -35.76 369.71 -10.87 -46.63 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.34 Total: 1.03 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.65 Total: -4.16 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.51 Total: -55.01 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.03 Total: 18.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.76 -10.87 -46.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084495319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.950 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds