Wall clock time and date at job start Tue Mar 31 2020 10:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38241 * 119.99901 * 2 1 4 4 C 1.38232 * 119.99636 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00252 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99820 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46614 * 90.00589 * 6 5 4 8 8 O 1.21277 * 120.00763 * 359.97438 * 7 6 5 9 9 N 1.34786 * 120.00001 * 180.02562 * 7 6 5 10 10 C 1.47808 * 135.00762 * 359.97438 * 9 7 6 11 11 C 1.54655 * 85.78695 * 153.81551 * 10 9 7 12 12 H 1.09001 * 115.01239 * 139.91416 * 11 10 9 13 13 C 1.53010 * 110.83946 * 270.22793 * 11 10 9 14 14 C 1.52616 * 109.52277 * 143.76730 * 13 11 10 15 15 N 1.46618 * 108.27122 * 301.24603 * 14 13 11 16 16 C 1.36939 * 119.88746 * 237.29005 * 15 14 13 17 17 H 1.07995 * 120.00040 * 25.08166 * 16 15 14 18 18 C 1.38813 * 119.99621 * 205.34982 * 16 15 14 19 19 N 1.31615 * 120.00169 * 13.20097 * 18 16 15 20 20 Si 1.86798 * 119.99854 * 193.19614 * 18 16 15 21 21 H 1.48500 * 109.47307 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47282 * 120.00191 * 20 18 16 23 23 H 1.48502 * 109.47143 * 240.00360 * 20 18 16 24 24 C 1.45675 * 120.21938 * 57.00969 * 15 14 13 25 25 C 1.46809 * 135.01457 * 180.02562 * 9 7 6 26 26 H 1.09003 * 110.91693 * 94.53925 * 25 9 7 27 27 C 1.38236 * 119.99941 * 0.25798 * 5 4 3 28 28 C 1.38227 * 120.00150 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46883 * 89.99568 * 1 2 3 30 30 H 1.08997 * 109.46982 * 209.99541 * 1 2 3 31 31 H 1.09001 * 109.47030 * 329.99671 * 1 2 3 32 32 H 1.07997 * 120.00041 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.99990 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47154 * 330.00756 * 6 5 4 35 35 H 1.08999 * 109.47003 * 210.00222 * 6 5 4 36 36 H 1.08998 * 113.81920 * 39.60301 * 10 9 7 37 37 H 1.09002 * 113.93476 * 268.04465 * 10 9 7 38 38 H 1.08999 * 109.48150 * 263.88830 * 13 11 10 39 39 H 1.09008 * 109.47358 * 23.89786 * 13 11 10 40 40 H 1.08998 * 109.65701 * 181.51361 * 14 13 11 41 41 H 1.09008 * 109.59323 * 60.93431 * 14 13 11 42 42 H 0.96994 * 120.00409 * 179.97438 * 19 18 16 43 43 H 1.08997 * 108.71197 * 82.02355 * 24 15 14 44 44 H 1.08997 * 108.71477 * 200.16950 * 24 15 14 45 45 H 1.07996 * 119.99720 * 179.72396 * 27 5 4 46 46 H 1.08004 * 120.00300 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0001 0.0005 7 6 6.2809 -0.0001 1.4214 8 8 5.4928 0.0003 2.3432 9 7 7.6060 0.0005 1.6678 10 6 8.8248 0.0007 0.8315 11 6 9.5140 0.6818 2.0369 12 1 10.5280 0.3388 2.2422 13 6 9.3942 2.2044 1.9435 14 6 9.2121 2.7883 3.3417 15 7 8.0059 2.1999 3.9321 16 6 6.9893 3.0120 4.3590 17 1 6.8643 3.9936 3.9264 18 6 6.1228 2.5756 5.3518 19 7 6.4202 1.5085 6.0626 20 14 4.5346 3.5029 5.6791 21 1 4.4353 4.6578 4.7509 22 1 3.3785 2.5957 5.4651 23 1 4.5270 3.9921 7.0812 24 6 7.8827 0.7541 4.0604 25 6 8.4372 0.0001 2.8780 26 1 8.7244 -1.0150 3.1524 27 6 3.5805 -1.1971 -0.0054 28 6 2.1982 -1.1971 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1325 -0.0004 33 1 4.1206 2.1325 0.0001 34 1 6.1420 0.8901 -0.5132 35 1 6.1420 -0.8899 -0.5133 36 1 8.7528 0.6362 -0.0512 37 1 9.2090 -0.9949 0.6095 38 1 10.2984 2.6132 1.4926 39 1 8.5322 2.4640 1.3288 40 1 9.0996 3.8704 3.2753 41 1 10.0793 2.5444 3.9555 42 1 5.8150 1.2038 6.7565 43 1 8.4135 0.4362 4.9578 44 1 6.8282 0.5013 4.1707 45 1 4.1205 -2.1324 -0.0099 46 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084495319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:49 Heat of formation + Delta-G solvation = 27.240190 kcal Electronic energy + Delta-G solvation = -26997.888467 eV Core-core repulsion = 23467.180111 eV Total energy + Delta-G solvation = -3530.708356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78204 -40.44094 -38.92406 -37.00260 -34.68703 -33.99198 -31.94555 -31.83498 -31.42448 -29.72971 -28.53055 -26.24788 -25.68083 -24.29910 -23.65972 -22.65287 -21.96959 -20.88958 -19.48081 -18.44788 -17.43402 -17.38111 -17.26547 -16.68286 -16.41353 -16.14116 -15.88493 -15.56707 -15.08308 -14.88153 -14.65238 -14.47052 -14.33916 -14.30478 -13.95320 -13.62772 -13.50870 -13.29002 -13.15449 -12.77712 -12.75056 -12.70630 -12.67762 -12.34129 -12.19773 -12.01455 -11.97319 -11.84600 -11.71860 -11.47354 -11.18306 -10.68298 -10.29403 -9.82834 -9.45087 -9.38285 -8.68204 -7.86685 -5.30622 0.37511 0.49760 1.31537 1.38539 1.44073 1.88005 2.04798 2.45697 2.83319 3.29849 3.51263 3.67223 3.72513 3.79360 3.86790 4.01940 4.06106 4.11790 4.26890 4.29347 4.46352 4.50895 4.56884 4.60279 4.61710 4.65753 4.73131 4.78086 4.80781 4.82558 4.88557 4.95287 4.98102 5.07690 5.16301 5.17127 5.27096 5.34263 5.44550 5.48654 5.55566 5.66722 5.67313 5.72815 5.84668 6.12664 6.38938 7.02138 7.18284 7.44296 7.95536 8.34353 9.17827 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.005458 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.198004 B = 5128.571071 C = 6888.723667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C -0.136 4.136 4 C -0.122 4.122 5 C -0.085 4.085 6 C -0.080 4.080 7 C 0.521 3.479 8 O -0.582 6.582 9 N -0.640 5.640 10 C 0.113 3.887 11 C -0.101 4.101 12 H 0.123 0.877 13 C -0.105 4.105 14 C 0.137 3.863 15 N -0.602 5.602 16 C -0.253 4.253 17 H 0.062 0.938 18 C -0.046 4.046 19 N -0.933 5.933 20 Si 0.953 3.047 21 H -0.264 1.264 22 H -0.306 1.306 23 H -0.283 1.283 24 C 0.182 3.818 25 C 0.107 3.893 26 H 0.084 0.916 27 C -0.115 4.115 28 C -0.131 4.131 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.025 0.975 42 H 0.243 0.757 43 H -0.010 1.010 44 H 0.052 0.948 45 H 0.133 0.867 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -5.675 -19.693 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.101 4.101 3 C -0.154 4.154 4 C -0.140 4.140 5 C -0.085 4.085 6 C -0.120 4.120 7 C 0.311 3.689 8 O -0.461 6.461 9 N -0.376 5.376 10 C -0.008 4.008 11 C -0.120 4.120 12 H 0.140 0.860 13 C -0.144 4.144 14 C 0.012 3.988 15 N -0.326 5.326 16 C -0.383 4.383 17 H 0.079 0.921 18 C -0.241 4.241 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.188 1.188 22 H -0.234 1.234 23 H -0.210 1.210 24 C 0.055 3.945 25 C 0.003 3.997 26 H 0.102 0.898 27 C -0.133 4.133 28 C -0.148 4.148 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.008 0.992 44 H 0.070 0.930 45 H 0.151 0.849 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.654 -5.719 -19.139 19.986 hybrid contribution -1.116 0.412 1.229 1.710 sum -0.461 -5.308 -17.909 18.685 Atomic orbital electron populations 1.20812 0.89194 1.03263 1.03325 1.20290 0.97696 0.92943 0.99176 1.21243 0.93999 0.98670 1.01499 1.21179 0.95106 0.97785 0.99917 1.19533 0.94716 0.93809 1.00455 1.20584 0.92118 1.06731 0.92541 1.20841 0.80554 0.75631 0.91857 1.90776 1.55716 1.51253 1.48385 1.50085 1.03878 1.72602 1.11031 1.23777 0.79789 1.02150 0.95074 1.22875 0.98428 0.95802 0.94887 0.85957 1.21652 1.01787 0.93838 0.97103 1.20910 0.87943 0.96451 0.93470 1.43716 1.16091 1.01279 1.71483 1.19415 1.06603 0.98964 1.13350 0.92063 1.25622 1.02583 0.99222 0.96673 1.70177 1.36811 1.27636 1.23408 0.85408 0.80598 0.78085 0.77688 1.18849 1.23399 1.20991 1.19668 1.00026 0.83137 0.91633 1.22648 0.89323 0.99008 0.88770 0.89837 1.21212 0.94927 0.97574 0.99571 1.21287 0.94068 0.98454 1.01039 0.89459 0.90780 0.91492 0.85041 0.86681 0.86836 0.85339 0.87883 0.86644 0.88124 0.93703 0.93027 0.95675 0.94814 0.99241 0.92969 0.84946 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 10.01 71.24 0.71 -1.42 16 2 C -0.10 -2.72 5.88 -19.87 -0.12 -2.84 16 3 C -0.14 -4.06 9.70 22.27 0.22 -3.85 16 4 C -0.12 -3.99 9.70 22.27 0.22 -3.78 16 5 C -0.08 -2.67 4.37 -19.87 -0.09 -2.76 16 6 C -0.08 -2.21 5.61 29.10 0.16 -2.05 16 7 C 0.52 20.46 7.98 87.66 0.70 21.16 16 8 O -0.58 -31.04 15.15 -3.02 -0.05 -31.08 16 9 N -0.64 -21.83 3.34 -822.76 -2.75 -24.58 16 10 C 0.11 2.29 7.97 86.34 0.69 2.98 16 11 C -0.10 -2.63 4.39 -10.31 -0.05 -2.68 16 12 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.10 -3.07 5.64 30.47 0.17 -2.90 16 14 C 0.14 5.56 6.44 86.23 0.56 6.11 16 15 N -0.60 -31.96 3.03 -708.69 -2.15 -34.11 16 16 C -0.25 -15.17 9.54 84.03 0.80 -14.37 16 17 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 18 C -0.05 -2.86 4.98 84.86 0.42 -2.44 16 19 N -0.93 -61.38 10.90 21.65 0.24 -61.15 16 20 Si 0.95 51.03 29.57 68.60 2.03 53.06 16 21 H -0.26 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.31 -17.15 7.11 99.48 0.71 -16.45 16 23 H -0.28 -14.61 7.11 99.48 0.71 -13.90 16 24 C 0.18 9.61 4.60 85.82 0.39 10.01 16 25 C 0.11 4.05 4.23 43.76 0.19 4.24 16 26 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 27 C -0.11 -3.32 9.70 22.27 0.22 -3.10 16 28 C -0.13 -3.49 9.70 22.27 0.22 -3.28 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 31 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 32 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 34 H 0.11 2.65 8.09 -2.39 -0.02 2.63 16 35 H 0.13 2.55 8.08 -2.39 -0.02 2.53 16 36 H 0.10 1.60 7.97 -2.39 -0.02 1.58 16 37 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.04 1.47 7.69 -2.38 -0.02 1.45 16 40 H 0.05 2.08 7.88 -2.39 -0.02 2.06 16 41 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.24 15.66 8.31 -92.71 -0.77 14.89 16 43 H -0.01 -0.59 7.96 -2.39 -0.02 -0.61 16 44 H 0.05 3.33 4.85 -2.39 -0.01 3.32 16 45 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 46 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -87.07 369.71 3.69 -83.38 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.95 Total: 15.42 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.41 Total: -0.95 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -4.66 Total: -119.83 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.05 Total: -31.08 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.03 Total: 53.06 kcal Total: -87.07 3.69 -83.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084495319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.620 kcal (2) G-P(sol) polarization free energy of solvation -87.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds