Wall clock time and date at job start Tue Mar 31 2020 10:23:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38241 * 119.99901 * 2 1
4 4 C 1.38232 * 119.99636 * 179.97438 * 3 2 1
5 5 C 1.38234 * 120.00252 * 0.02562 * 4 3 2
6 6 C 1.50701 * 119.99820 * 179.97438 * 5 4 3
7 7 C 1.50699 * 109.46614 * 90.00589 * 6 5 4
8 8 O 1.21277 * 120.00763 * 359.97438 * 7 6 5
9 9 N 1.34786 * 120.00001 * 180.02562 * 7 6 5
10 10 C 1.47808 * 135.00762 * 359.97438 * 9 7 6
11 11 C 1.54655 * 85.78695 * 153.81551 * 10 9 7
12 12 H 1.09001 * 115.01239 * 139.91416 * 11 10 9
13 13 C 1.53010 * 110.83946 * 270.22793 * 11 10 9
14 14 C 1.52616 * 109.52277 * 143.76730 * 13 11 10
15 15 N 1.46618 * 108.27122 * 301.24603 * 14 13 11
16 16 C 1.36939 * 119.88746 * 237.29005 * 15 14 13
17 17 H 1.07995 * 120.00040 * 25.08166 * 16 15 14
18 18 C 1.38813 * 119.99621 * 205.34982 * 16 15 14
19 19 N 1.31615 * 120.00169 * 13.20097 * 18 16 15
20 20 Si 1.86798 * 119.99854 * 193.19614 * 18 16 15
21 21 H 1.48500 * 109.47307 * 0.02562 * 20 18 16
22 22 H 1.48499 * 109.47282 * 120.00191 * 20 18 16
23 23 H 1.48502 * 109.47143 * 240.00360 * 20 18 16
24 24 C 1.45675 * 120.21938 * 57.00969 * 15 14 13
25 25 C 1.46809 * 135.01457 * 180.02562 * 9 7 6
26 26 H 1.09003 * 110.91693 * 94.53925 * 25 9 7
27 27 C 1.38236 * 119.99941 * 0.25798 * 5 4 3
28 28 C 1.38227 * 120.00150 * 179.97438 * 2 1 3
29 29 H 1.09002 * 109.46883 * 89.99568 * 1 2 3
30 30 H 1.08997 * 109.46982 * 209.99541 * 1 2 3
31 31 H 1.09001 * 109.47030 * 329.99671 * 1 2 3
32 32 H 1.07997 * 120.00041 * 359.97438 * 3 2 1
33 33 H 1.08006 * 119.99990 * 179.97438 * 4 3 2
34 34 H 1.08997 * 109.47154 * 330.00756 * 6 5 4
35 35 H 1.08999 * 109.47003 * 210.00222 * 6 5 4
36 36 H 1.08998 * 113.81920 * 39.60301 * 10 9 7
37 37 H 1.09002 * 113.93476 * 268.04465 * 10 9 7
38 38 H 1.08999 * 109.48150 * 263.88830 * 13 11 10
39 39 H 1.09008 * 109.47358 * 23.89786 * 13 11 10
40 40 H 1.08998 * 109.65701 * 181.51361 * 14 13 11
41 41 H 1.09008 * 109.59323 * 60.93431 * 14 13 11
42 42 H 0.96994 * 120.00409 * 179.97438 * 19 18 16
43 43 H 1.08997 * 108.71197 * 82.02355 * 24 15 14
44 44 H 1.08997 * 108.71477 * 200.16950 * 24 15 14
45 45 H 1.07996 * 119.99720 * 179.72396 * 27 5 4
46 46 H 1.08004 * 120.00300 * 0.02562 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1972 0.0000
4 6 3.5805 1.1972 0.0005
5 6 4.2717 0.0000 0.0005
6 6 5.7787 0.0001 0.0005
7 6 6.2809 -0.0001 1.4214
8 8 5.4928 0.0003 2.3432
9 7 7.6060 0.0005 1.6678
10 6 8.8248 0.0007 0.8315
11 6 9.5140 0.6818 2.0369
12 1 10.5280 0.3388 2.2422
13 6 9.3942 2.2044 1.9435
14 6 9.2121 2.7883 3.3417
15 7 8.0059 2.1999 3.9321
16 6 6.9893 3.0120 4.3590
17 1 6.8643 3.9936 3.9264
18 6 6.1228 2.5756 5.3518
19 7 6.4202 1.5085 6.0626
20 14 4.5346 3.5029 5.6791
21 1 4.4353 4.6578 4.7509
22 1 3.3785 2.5957 5.4651
23 1 4.5270 3.9921 7.0812
24 6 7.8827 0.7541 4.0604
25 6 8.4372 0.0001 2.8780
26 1 8.7244 -1.0150 3.1524
27 6 3.5805 -1.1971 -0.0054
28 6 2.1982 -1.1971 0.0005
29 1 -0.3633 0.0001 -1.0277
30 1 -0.3633 -0.8900 0.5138
31 1 -0.3633 0.8900 0.5139
32 1 1.6582 2.1325 -0.0004
33 1 4.1206 2.1325 0.0001
34 1 6.1420 0.8901 -0.5132
35 1 6.1420 -0.8899 -0.5133
36 1 8.7528 0.6362 -0.0512
37 1 9.2090 -0.9949 0.6095
38 1 10.2984 2.6132 1.4926
39 1 8.5322 2.4640 1.3288
40 1 9.0996 3.8704 3.2753
41 1 10.0793 2.5444 3.9555
42 1 5.8150 1.2038 6.7565
43 1 8.4135 0.4362 4.9578
44 1 6.8282 0.5013 4.1707
45 1 4.1205 -2.1324 -0.0099
46 1 1.6582 -2.1324 0.0005
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001084495319.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:23:49
Heat of formation + Delta-G solvation = 27.240190 kcal
Electronic energy + Delta-G solvation = -26997.888467 eV
Core-core repulsion = 23467.180111 eV
Total energy + Delta-G solvation = -3530.708356 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.78204 -40.44094 -38.92406 -37.00260 -34.68703 -33.99198 -31.94555 -31.83498
-31.42448 -29.72971 -28.53055 -26.24788 -25.68083 -24.29910 -23.65972 -22.65287
-21.96959 -20.88958 -19.48081 -18.44788 -17.43402 -17.38111 -17.26547 -16.68286
-16.41353 -16.14116 -15.88493 -15.56707 -15.08308 -14.88153 -14.65238 -14.47052
-14.33916 -14.30478 -13.95320 -13.62772 -13.50870 -13.29002 -13.15449 -12.77712
-12.75056 -12.70630 -12.67762 -12.34129 -12.19773 -12.01455 -11.97319 -11.84600
-11.71860 -11.47354 -11.18306 -10.68298 -10.29403 -9.82834 -9.45087 -9.38285
-8.68204 -7.86685 -5.30622 0.37511 0.49760 1.31537 1.38539 1.44073
1.88005 2.04798 2.45697 2.83319 3.29849 3.51263 3.67223 3.72513
3.79360 3.86790 4.01940 4.06106 4.11790 4.26890 4.29347 4.46352
4.50895 4.56884 4.60279 4.61710 4.65753 4.73131 4.78086 4.80781
4.82558 4.88557 4.95287 4.98102 5.07690 5.16301 5.17127 5.27096
5.34263 5.44550 5.48654 5.55566 5.66722 5.67313 5.72815 5.84668
6.12664 6.38938 7.02138 7.18284 7.44296 7.95536 8.34353 9.17827
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.011112 B = 0.005458 C = 0.004064
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2519.198004 B = 5128.571071 C = 6888.723667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.101 4.101
3 C -0.136 4.136
4 C -0.122 4.122
5 C -0.085 4.085
6 C -0.080 4.080
7 C 0.521 3.479
8 O -0.582 6.582
9 N -0.640 5.640
10 C 0.113 3.887
11 C -0.101 4.101
12 H 0.123 0.877
13 C -0.105 4.105
14 C 0.137 3.863
15 N -0.602 5.602
16 C -0.253 4.253
17 H 0.062 0.938
18 C -0.046 4.046
19 N -0.933 5.933
20 Si 0.953 3.047
21 H -0.264 1.264
22 H -0.306 1.306
23 H -0.283 1.283
24 C 0.182 3.818
25 C 0.107 3.893
26 H 0.084 0.916
27 C -0.115 4.115
28 C -0.131 4.131
29 H 0.087 0.913
30 H 0.073 0.927
31 H 0.066 0.934
32 H 0.132 0.868
33 H 0.115 0.885
34 H 0.114 0.886
35 H 0.129 0.871
36 H 0.103 0.897
37 H 0.116 0.884
38 H 0.100 0.900
39 H 0.044 0.956
40 H 0.051 0.949
41 H 0.025 0.975
42 H 0.243 0.757
43 H -0.010 1.010
44 H 0.052 0.948
45 H 0.133 0.867
46 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.362 -5.675 -19.693 20.540
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.101 4.101
3 C -0.154 4.154
4 C -0.140 4.140
5 C -0.085 4.085
6 C -0.120 4.120
7 C 0.311 3.689
8 O -0.461 6.461
9 N -0.376 5.376
10 C -0.008 4.008
11 C -0.120 4.120
12 H 0.140 0.860
13 C -0.144 4.144
14 C 0.012 3.988
15 N -0.326 5.326
16 C -0.383 4.383
17 H 0.079 0.921
18 C -0.241 4.241
19 N -0.580 5.580
20 Si 0.782 3.218
21 H -0.188 1.188
22 H -0.234 1.234
23 H -0.210 1.210
24 C 0.055 3.945
25 C 0.003 3.997
26 H 0.102 0.898
27 C -0.133 4.133
28 C -0.148 4.148
29 H 0.105 0.895
30 H 0.092 0.908
31 H 0.085 0.915
32 H 0.150 0.850
33 H 0.133 0.867
34 H 0.132 0.868
35 H 0.147 0.853
36 H 0.121 0.879
37 H 0.134 0.866
38 H 0.119 0.881
39 H 0.063 0.937
40 H 0.070 0.930
41 H 0.043 0.957
42 H 0.052 0.948
43 H 0.008 0.992
44 H 0.070 0.930
45 H 0.151 0.849
46 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 0.654 -5.719 -19.139 19.986
hybrid contribution -1.116 0.412 1.229 1.710
sum -0.461 -5.308 -17.909 18.685
Atomic orbital electron populations
1.20812 0.89194 1.03263 1.03325 1.20290 0.97696 0.92943 0.99176
1.21243 0.93999 0.98670 1.01499 1.21179 0.95106 0.97785 0.99917
1.19533 0.94716 0.93809 1.00455 1.20584 0.92118 1.06731 0.92541
1.20841 0.80554 0.75631 0.91857 1.90776 1.55716 1.51253 1.48385
1.50085 1.03878 1.72602 1.11031 1.23777 0.79789 1.02150 0.95074
1.22875 0.98428 0.95802 0.94887 0.85957 1.21652 1.01787 0.93838
0.97103 1.20910 0.87943 0.96451 0.93470 1.43716 1.16091 1.01279
1.71483 1.19415 1.06603 0.98964 1.13350 0.92063 1.25622 1.02583
0.99222 0.96673 1.70177 1.36811 1.27636 1.23408 0.85408 0.80598
0.78085 0.77688 1.18849 1.23399 1.20991 1.19668 1.00026 0.83137
0.91633 1.22648 0.89323 0.99008 0.88770 0.89837 1.21212 0.94927
0.97574 0.99571 1.21287 0.94068 0.98454 1.01039 0.89459 0.90780
0.91492 0.85041 0.86681 0.86836 0.85339 0.87883 0.86644 0.88124
0.93703 0.93027 0.95675 0.94814 0.99241 0.92969 0.84946 0.83965
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.13 10.01 71.24 0.71 -1.42 16
2 C -0.10 -2.72 5.88 -19.87 -0.12 -2.84 16
3 C -0.14 -4.06 9.70 22.27 0.22 -3.85 16
4 C -0.12 -3.99 9.70 22.27 0.22 -3.78 16
5 C -0.08 -2.67 4.37 -19.87 -0.09 -2.76 16
6 C -0.08 -2.21 5.61 29.10 0.16 -2.05 16
7 C 0.52 20.46 7.98 87.66 0.70 21.16 16
8 O -0.58 -31.04 15.15 -3.02 -0.05 -31.08 16
9 N -0.64 -21.83 3.34 -822.76 -2.75 -24.58 16
10 C 0.11 2.29 7.97 86.34 0.69 2.98 16
11 C -0.10 -2.63 4.39 -10.31 -0.05 -2.68 16
12 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16
13 C -0.10 -3.07 5.64 30.47 0.17 -2.90 16
14 C 0.14 5.56 6.44 86.23 0.56 6.11 16
15 N -0.60 -31.96 3.03 -708.69 -2.15 -34.11 16
16 C -0.25 -15.17 9.54 84.03 0.80 -14.37 16
17 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16
18 C -0.05 -2.86 4.98 84.86 0.42 -2.44 16
19 N -0.93 -61.38 10.90 21.65 0.24 -61.15 16
20 Si 0.95 51.03 29.57 68.60 2.03 53.06 16
21 H -0.26 -13.29 7.11 99.48 0.71 -12.58 16
22 H -0.31 -17.15 7.11 99.48 0.71 -16.45 16
23 H -0.28 -14.61 7.11 99.48 0.71 -13.90 16
24 C 0.18 9.61 4.60 85.82 0.39 10.01 16
25 C 0.11 4.05 4.23 43.76 0.19 4.24 16
26 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16
27 C -0.11 -3.32 9.70 22.27 0.22 -3.10 16
28 C -0.13 -3.49 9.70 22.27 0.22 -3.28 16
29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
30 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16
31 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16
32 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16
33 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16
34 H 0.11 2.65 8.09 -2.39 -0.02 2.63 16
35 H 0.13 2.55 8.08 -2.39 -0.02 2.53 16
36 H 0.10 1.60 7.97 -2.39 -0.02 1.58 16
37 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16
38 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16
39 H 0.04 1.47 7.69 -2.38 -0.02 1.45 16
40 H 0.05 2.08 7.88 -2.39 -0.02 2.06 16
41 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16
42 H 0.24 15.66 8.31 -92.71 -0.77 14.89 16
43 H -0.01 -0.59 7.96 -2.39 -0.02 -0.61 16
44 H 0.05 3.33 4.85 -2.39 -0.01 3.32 16
45 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16
46 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16
Total: -1.00 -87.07 369.71 3.69 -83.38
By element:
Atomic # 1 Polarization: 14.47 SS G_CDS: 0.95 Total: 15.42 kcal
Atomic # 6 Polarization: -6.36 SS G_CDS: 5.41 Total: -0.95 kcal
Atomic # 7 Polarization: -115.17 SS G_CDS: -4.66 Total: -119.83 kcal
Atomic # 8 Polarization: -31.04 SS G_CDS: -0.05 Total: -31.08 kcal
Atomic # 14 Polarization: 51.03 SS G_CDS: 2.03 Total: 53.06 kcal
Total: -87.07 3.69 -83.38 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084495319.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.620 kcal
(2) G-P(sol) polarization free energy of solvation -87.068 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.380 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds