Wall clock time and date at job start Tue Mar 31 2020 10:42:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.38386 * 119.92684 * 2 1
4 4 C 1.38334 * 120.29354 * 180.02562 * 3 2 1
5 5 C 1.37975 * 120.14882 * 0.02586 * 4 3 2
6 6 C 1.50696 * 120.07886 * 180.02562 * 5 4 3
7 7 C 1.39566 * 119.84955 * 359.97386 * 5 4 3
8 8 C 1.47843 * 120.14276 * 179.97438 * 7 5 4
9 9 O 1.21552 * 120.00242 * 323.12543 * 8 7 5
10 10 N 1.34777 * 120.00280 * 143.12975 * 8 7 5
11 11 C 1.49839 * 135.06023 * 355.28342 * 10 8 7
12 12 C 1.54654 * 85.09718 * 153.77520 * 11 10 8
13 13 H 1.09000 * 114.43812 * 140.13031 * 12 11 10
14 14 C 1.53008 * 110.84339 * 269.94175 * 12 11 10
15 15 C 1.53098 * 109.45004 * 143.89567 * 14 12 11
16 16 N 1.46621 * 108.04882 * 300.99691 * 15 14 12
17 17 C 1.36940 * 119.88956 * 237.33399 * 16 15 14
18 18 H 1.07995 * 120.00024 * 153.74195 * 17 16 15
19 19 C 1.38809 * 119.99678 * 333.73565 * 17 16 15
20 20 N 1.31625 * 119.99698 * 158.56001 * 19 17 16
21 21 Si 1.86803 * 120.00381 * 338.56232 * 19 17 16
22 22 H 1.48499 * 109.46827 * 95.24525 * 21 19 17
23 23 H 1.48502 * 109.46968 * 215.24444 * 21 19 17
24 24 H 1.48498 * 109.46851 * 335.24309 * 21 19 17
25 25 C 1.45413 * 119.51124 * 58.76383 * 16 15 14
26 26 C 1.46811 * 135.01637 * 175.24055 * 10 8 7
27 27 H 1.08998 * 110.91409 * 94.55088 * 26 10 8
28 28 C 1.37938 * 119.92991 * 180.26251 * 2 1 3
29 29 H 1.08998 * 109.47325 * 89.99820 * 1 2 3
30 30 H 1.09007 * 109.47009 * 209.99866 * 1 2 3
31 31 H 1.08994 * 109.47659 * 329.99374 * 1 2 3
32 32 H 1.07996 * 119.85104 * 359.97438 * 3 2 1
33 33 H 1.07998 * 119.92506 * 180.02562 * 4 3 2
34 34 H 1.09003 * 109.47006 * 264.25095 * 6 5 4
35 35 H 1.08995 * 109.46980 * 24.24573 * 6 5 4
36 36 H 1.09002 * 109.47329 * 144.24881 * 6 5 4
37 37 H 1.08993 * 114.36410 * 39.81612 * 11 10 8
38 38 H 1.08997 * 113.83895 * 267.68274 * 11 10 8
39 39 H 1.09006 * 109.46960 * 23.89823 * 14 12 11
40 40 H 1.08997 * 109.48175 * 263.89401 * 14 12 11
41 41 H 1.09003 * 109.75451 * 60.64287 * 15 14 12
42 42 H 1.08994 * 109.75691 * 181.34544 * 15 14 12
43 43 H 0.97001 * 119.99943 * 180.02562 * 20 19 17
44 44 H 1.08999 * 107.69721 * 198.55598 * 25 16 15
45 45 H 1.09002 * 109.83925 * 80.36985 * 25 16 15
46 46 H 1.07998 * 120.07432 * 0.02562 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1973 1.1993 0.0000
4 6 3.5806 1.2082 -0.0005
5 6 4.2812 0.0196 -0.0016
6 6 5.7882 0.0310 -0.0016
7 6 3.5911 -1.1935 -0.0016
8 6 4.3353 -2.4710 -0.0033
9 8 5.3681 -2.5719 -0.6363
10 7 3.8685 -3.5238 0.6968
11 6 2.7224 -3.7494 1.6352
12 6 2.8091 -5.2236 1.1758
13 1 2.6631 -5.9534 1.9721
14 6 1.9176 -5.4671 -0.0436
15 6 2.5978 -6.4690 -0.9804
16 7 3.8933 -5.9104 -1.3796
17 6 4.1789 -5.7298 -2.7066
18 1 4.8868 -4.9721 -3.0083
19 6 3.5587 -6.5208 -3.6639
20 7 3.4844 -6.1077 -4.9114
21 14 2.8293 -8.1716 -3.1817
22 1 1.3809 -8.0088 -2.8974
23 1 3.0097 -9.1368 -4.2958
24 1 3.5177 -8.6815 -1.9687
25 6 4.8766 -5.5821 -0.3598
26 6 4.2722 -4.9264 0.8558
27 1 4.9085 -5.0513 1.7319
28 6 2.1952 -1.1954 -0.0055
29 1 -0.3634 0.0000 -1.0276
30 1 -0.3633 -0.8901 0.5138
31 1 -0.3634 0.8898 0.5139
32 1 1.6537 2.1325 -0.0004
33 1 4.1134 2.1476 -0.0001
34 1 6.1523 -0.0682 -1.0242
35 1 6.1443 0.9704 0.4212
36 1 6.1579 -0.8007 0.5981
37 1 1.7978 -3.2512 1.3437
38 1 2.9762 -3.5997 2.6846
39 1 1.7584 -4.5265 -0.5710
40 1 0.9578 -5.8680 0.2821
41 1 2.7490 -7.4152 -0.4608
42 1 1.9777 -6.6281 -1.8626
43 1 3.0506 -6.6602 -5.5803
44 1 5.5986 -4.8970 -0.8041
45 1 5.4000 -6.4853 -0.0461
46 1 1.6552 -2.1307 -0.0102
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001084795934.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:15
Heat of formation + Delta-G solvation = 56.816701 kcal
Electronic energy + Delta-G solvation = -27398.010027 eV
Core-core repulsion = 23868.584204 eV
Total energy + Delta-G solvation = -3529.425822 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.74179 -39.41396 -37.46694 -35.52408 -33.71884 -32.02322 -31.34319 -31.15825
-29.39624 -28.68027 -27.24037 -25.00630 -23.97240 -23.74238 -23.10118 -21.29238
-21.13587 -19.69770 -17.86143 -17.10825 -16.44962 -15.96905 -15.80565 -15.61978
-15.28859 -14.90925 -14.29124 -14.12202 -13.76244 -13.58920 -13.45803 -13.27882
-13.04474 -12.89346 -12.73415 -12.53809 -12.39644 -12.18569 -11.92343 -11.87587
-11.51416 -11.47154 -11.41462 -11.17023 -10.99381 -10.89208 -10.66816 -10.25857
-9.93296 -9.66725 -9.38221 -9.12050 -8.91466 -8.62589 -8.47255 -8.23500
-6.91389 -5.86181 -3.21112 1.04547 1.34500 3.03710 3.11373 3.33261
3.51183 3.53634 3.83571 4.51183 4.53093 4.57780 4.75640 4.76956
4.92739 4.99714 5.06932 5.13095 5.21626 5.26376 5.41029 5.45741
5.50399 5.51954 5.55170 5.63150 5.68916 5.73177 5.80280 5.82737
5.85976 5.98407 5.98853 6.02820 6.19352 6.27626 6.29499 6.32807
6.36354 6.50125 6.55561 6.61507 6.68690 6.82237 6.91655 6.96920
8.04163 8.09139 8.45360 8.58676 9.05645 9.81074 10.15000 11.29908
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.015161 B = 0.004583 C = 0.004548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1846.340633 B = 6107.775034 C = 6155.364593
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.102 4.102
3 C -0.101 4.101
4 C -0.127 4.127
5 C -0.041 4.041
6 C -0.111 4.111
7 C -0.114 4.114
8 C 0.585 3.415
9 O -0.521 6.521
10 N -0.629 5.629
11 C 0.095 3.905
12 C -0.109 4.109
13 H 0.090 0.910
14 C -0.118 4.118
15 C 0.124 3.876
16 N -0.594 5.594
17 C -0.250 4.250
18 H 0.086 0.914
19 C 0.020 3.980
20 N -0.908 5.908
21 Si 0.882 3.118
22 H -0.291 1.291
23 H -0.305 1.305
24 H -0.270 1.270
25 C 0.142 3.858
26 C 0.134 3.866
27 H 0.079 0.921
28 C -0.082 4.082
29 H 0.071 0.929
30 H 0.066 0.934
31 H 0.065 0.935
32 H 0.123 0.877
33 H 0.126 0.874
34 H 0.081 0.919
35 H 0.059 0.941
36 H 0.070 0.930
37 H 0.082 0.918
38 H 0.083 0.917
39 H 0.067 0.933
40 H 0.059 0.941
41 H 0.028 0.972
42 H 0.074 0.926
43 H 0.261 0.739
44 H 0.080 0.920
45 H 0.026 0.974
46 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.469 11.366 16.973 21.146
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.102 4.102
3 C -0.119 4.119
4 C -0.145 4.145
5 C -0.041 4.041
6 C -0.167 4.167
7 C -0.117 4.117
8 C 0.374 3.626
9 O -0.398 6.398
10 N -0.365 5.365
11 C -0.028 4.028
12 C -0.128 4.128
13 H 0.108 0.892
14 C -0.157 4.157
15 C -0.001 4.001
16 N -0.317 5.317
17 C -0.379 4.379
18 H 0.104 0.896
19 C -0.178 4.178
20 N -0.552 5.552
21 Si 0.713 3.287
22 H -0.219 1.219
23 H -0.233 1.233
24 H -0.196 1.196
25 C 0.015 3.985
26 C 0.030 3.970
27 H 0.097 0.903
28 C -0.101 4.101
29 H 0.090 0.910
30 H 0.085 0.915
31 H 0.084 0.916
32 H 0.141 0.859
33 H 0.144 0.856
34 H 0.099 0.901
35 H 0.078 0.922
36 H 0.089 0.911
37 H 0.101 0.899
38 H 0.101 0.899
39 H 0.085 0.915
40 H 0.078 0.922
41 H 0.046 0.954
42 H 0.092 0.908
43 H 0.071 0.929
44 H 0.098 0.902
45 H 0.043 0.957
46 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -4.822 11.472 16.327 20.528
hybrid contribution -0.548 -0.913 0.139 1.074
sum -5.370 10.558 16.466 20.284
Atomic orbital electron populations
1.20768 0.90926 1.02598 1.02561 1.19820 0.96215 0.92864 1.01291
1.21122 0.94124 0.97443 0.99245 1.20940 0.94059 0.97287 1.02195
1.19942 0.96564 0.91561 0.96075 1.20816 0.90398 1.01860 1.03651
1.19857 0.93707 0.93166 1.04984 1.17730 0.83994 0.81769 0.79065
1.90784 1.23559 1.82667 1.42741 1.50194 1.31426 1.10025 1.44890
1.24037 0.90014 0.95192 0.93525 1.22863 0.95800 0.95437 0.98683
0.89205 1.21863 0.96767 1.01835 0.95221 1.21236 0.88194 0.93742
0.96958 1.43768 1.10511 1.74573 1.02867 1.18950 1.25297 1.14095
0.79530 0.89637 1.25252 0.99331 0.98238 0.94943 1.69863 1.45915
1.37291 1.02120 0.86970 0.78072 0.86426 0.77273 1.21886 1.23310
1.19550 1.20150 0.92416 0.97358 0.88574 1.22348 0.96059 0.79466
0.99087 0.90315 1.21299 0.92849 0.98161 0.97760 0.91031 0.91513
0.91636 0.85947 0.85642 0.90067 0.92230 0.91093 0.89943 0.89923
0.91464 0.92248 0.95421 0.90778 0.92916 0.90187 0.95667 0.85326
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16
2 C -0.10 -1.22 5.87 -104.68 -0.61 -1.84 16
3 C -0.10 -1.13 9.69 -39.49 -0.38 -1.51 16
4 C -0.13 -1.52 9.67 -39.64 -0.38 -1.90 16
5 C -0.04 -0.59 5.91 -104.23 -0.62 -1.21 16
6 C -0.11 -1.53 8.67 36.00 0.31 -1.22 16
7 C -0.11 -1.87 5.71 -104.97 -0.60 -2.47 16
8 C 0.58 11.13 7.02 -12.33 -0.09 11.04 16
9 O -0.52 -11.80 14.15 5.32 0.08 -11.73 16
10 N -0.63 -10.48 3.35 -172.40 -0.58 -11.06 16
11 C 0.09 1.15 7.47 -1.42 -0.01 1.14 16
12 C -0.11 -1.51 4.34 -89.97 -0.39 -1.90 16
13 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16
14 C -0.12 -1.97 5.66 -26.68 -0.15 -2.12 16
15 C 0.12 2.68 4.12 -3.93 -0.02 2.67 16
16 N -0.59 -14.56 2.78 -175.29 -0.49 -15.04 16
17 C -0.25 -7.37 10.00 -15.06 -0.15 -7.52 16
18 H 0.09 2.81 8.01 -52.49 -0.42 2.39 16
19 C 0.02 0.61 5.22 -17.43 -0.09 0.52 16
20 N -0.91 -28.86 13.97 55.49 0.78 -28.08 16
21 Si 0.88 22.65 24.36 -169.99 -4.14 18.51 16
22 H -0.29 -7.14 6.67 56.52 0.38 -6.76 16
23 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16
24 H -0.27 -6.76 6.57 56.52 0.37 -6.38 16
25 C 0.14 3.00 6.21 -5.75 -0.04 2.96 16
26 C 0.13 2.21 4.22 -69.15 -0.29 1.92 16
27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
28 C -0.08 -1.18 8.40 -39.18 -0.33 -1.51 16
29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16
31 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16
32 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16
33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16
34 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16
35 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16
36 H 0.07 1.08 6.78 -51.93 -0.35 0.72 16
37 H 0.08 0.92 5.65 -51.93 -0.29 0.62 16
38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
39 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16
40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
41 H 0.03 0.57 7.27 -51.93 -0.38 0.20 16
42 H 0.07 1.78 4.06 -51.93 -0.21 1.57 16
43 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16
44 H 0.08 1.92 6.36 -51.93 -0.33 1.59 16
45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16
46 H 0.13 1.80 5.95 -52.49 -0.31 1.49 16
LS Contribution 354.56 15.07 5.34 5.34
Total: -1.00 -35.10 354.56 -9.44 -44.54
By element:
Atomic # 1 Polarization: 8.06 SS G_CDS: -6.95 Total: 1.11 kcal
Atomic # 6 Polarization: -0.12 SS G_CDS: -3.48 Total: -3.60 kcal
Atomic # 7 Polarization: -53.89 SS G_CDS: -0.29 Total: -54.18 kcal
Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.73 kcal
Atomic # 14 Polarization: 22.65 SS G_CDS: -4.14 Total: 18.51 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -35.10 -9.44 -44.54 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084795934.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.359 kcal
(2) G-P(sol) polarization free energy of solvation -35.103 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.255 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.817 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds