Wall clock time and date at job start Tue Mar 31 2020 10:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38386 * 119.92684 * 2 1 4 4 C 1.38334 * 120.29354 * 180.02562 * 3 2 1 5 5 C 1.37975 * 120.14882 * 0.02586 * 4 3 2 6 6 C 1.50696 * 120.07886 * 180.02562 * 5 4 3 7 7 C 1.39566 * 119.84955 * 359.97386 * 5 4 3 8 8 C 1.47843 * 120.14276 * 179.97438 * 7 5 4 9 9 O 1.21552 * 120.00242 * 323.12543 * 8 7 5 10 10 N 1.34777 * 120.00280 * 143.12975 * 8 7 5 11 11 C 1.49839 * 135.06023 * 355.28342 * 10 8 7 12 12 C 1.54654 * 85.09718 * 153.77520 * 11 10 8 13 13 H 1.09000 * 114.43812 * 140.13031 * 12 11 10 14 14 C 1.53008 * 110.84339 * 269.94175 * 12 11 10 15 15 C 1.53098 * 109.45004 * 143.89567 * 14 12 11 16 16 N 1.46621 * 108.04882 * 300.99691 * 15 14 12 17 17 C 1.36940 * 119.88956 * 237.33399 * 16 15 14 18 18 H 1.07995 * 120.00024 * 153.74195 * 17 16 15 19 19 C 1.38809 * 119.99678 * 333.73565 * 17 16 15 20 20 N 1.31625 * 119.99698 * 158.56001 * 19 17 16 21 21 Si 1.86803 * 120.00381 * 338.56232 * 19 17 16 22 22 H 1.48499 * 109.46827 * 95.24525 * 21 19 17 23 23 H 1.48502 * 109.46968 * 215.24444 * 21 19 17 24 24 H 1.48498 * 109.46851 * 335.24309 * 21 19 17 25 25 C 1.45413 * 119.51124 * 58.76383 * 16 15 14 26 26 C 1.46811 * 135.01637 * 175.24055 * 10 8 7 27 27 H 1.08998 * 110.91409 * 94.55088 * 26 10 8 28 28 C 1.37938 * 119.92991 * 180.26251 * 2 1 3 29 29 H 1.08998 * 109.47325 * 89.99820 * 1 2 3 30 30 H 1.09007 * 109.47009 * 209.99866 * 1 2 3 31 31 H 1.08994 * 109.47659 * 329.99374 * 1 2 3 32 32 H 1.07996 * 119.85104 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.92506 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47006 * 264.25095 * 6 5 4 35 35 H 1.08995 * 109.46980 * 24.24573 * 6 5 4 36 36 H 1.09002 * 109.47329 * 144.24881 * 6 5 4 37 37 H 1.08993 * 114.36410 * 39.81612 * 11 10 8 38 38 H 1.08997 * 113.83895 * 267.68274 * 11 10 8 39 39 H 1.09006 * 109.46960 * 23.89823 * 14 12 11 40 40 H 1.08997 * 109.48175 * 263.89401 * 14 12 11 41 41 H 1.09003 * 109.75451 * 60.64287 * 15 14 12 42 42 H 1.08994 * 109.75691 * 181.34544 * 15 14 12 43 43 H 0.97001 * 119.99943 * 180.02562 * 20 19 17 44 44 H 1.08999 * 107.69721 * 198.55598 * 25 16 15 45 45 H 1.09002 * 109.83925 * 80.36985 * 25 16 15 46 46 H 1.07998 * 120.07432 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5806 1.2082 -0.0005 5 6 4.2812 0.0196 -0.0016 6 6 5.7882 0.0310 -0.0016 7 6 3.5911 -1.1935 -0.0016 8 6 4.3353 -2.4710 -0.0033 9 8 5.3681 -2.5719 -0.6363 10 7 3.8685 -3.5238 0.6968 11 6 2.7224 -3.7494 1.6352 12 6 2.8091 -5.2236 1.1758 13 1 2.6631 -5.9534 1.9721 14 6 1.9176 -5.4671 -0.0436 15 6 2.5978 -6.4690 -0.9804 16 7 3.8933 -5.9104 -1.3796 17 6 4.1789 -5.7298 -2.7066 18 1 4.8868 -4.9721 -3.0083 19 6 3.5587 -6.5208 -3.6639 20 7 3.4844 -6.1077 -4.9114 21 14 2.8293 -8.1716 -3.1817 22 1 1.3809 -8.0088 -2.8974 23 1 3.0097 -9.1368 -4.2958 24 1 3.5177 -8.6815 -1.9687 25 6 4.8766 -5.5821 -0.3598 26 6 4.2722 -4.9264 0.8558 27 1 4.9085 -5.0513 1.7319 28 6 2.1952 -1.1954 -0.0055 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8898 0.5139 32 1 1.6537 2.1325 -0.0004 33 1 4.1134 2.1476 -0.0001 34 1 6.1523 -0.0682 -1.0242 35 1 6.1443 0.9704 0.4212 36 1 6.1579 -0.8007 0.5981 37 1 1.7978 -3.2512 1.3437 38 1 2.9762 -3.5997 2.6846 39 1 1.7584 -4.5265 -0.5710 40 1 0.9578 -5.8680 0.2821 41 1 2.7490 -7.4152 -0.4608 42 1 1.9777 -6.6281 -1.8626 43 1 3.0506 -6.6602 -5.5803 44 1 5.5986 -4.8970 -0.8041 45 1 5.4000 -6.4853 -0.0461 46 1 1.6552 -2.1307 -0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084795934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:15 Heat of formation + Delta-G solvation = 56.816701 kcal Electronic energy + Delta-G solvation = -27398.010027 eV Core-core repulsion = 23868.584204 eV Total energy + Delta-G solvation = -3529.425822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74179 -39.41396 -37.46694 -35.52408 -33.71884 -32.02322 -31.34319 -31.15825 -29.39624 -28.68027 -27.24037 -25.00630 -23.97240 -23.74238 -23.10118 -21.29238 -21.13587 -19.69770 -17.86143 -17.10825 -16.44962 -15.96905 -15.80565 -15.61978 -15.28859 -14.90925 -14.29124 -14.12202 -13.76244 -13.58920 -13.45803 -13.27882 -13.04474 -12.89346 -12.73415 -12.53809 -12.39644 -12.18569 -11.92343 -11.87587 -11.51416 -11.47154 -11.41462 -11.17023 -10.99381 -10.89208 -10.66816 -10.25857 -9.93296 -9.66725 -9.38221 -9.12050 -8.91466 -8.62589 -8.47255 -8.23500 -6.91389 -5.86181 -3.21112 1.04547 1.34500 3.03710 3.11373 3.33261 3.51183 3.53634 3.83571 4.51183 4.53093 4.57780 4.75640 4.76956 4.92739 4.99714 5.06932 5.13095 5.21626 5.26376 5.41029 5.45741 5.50399 5.51954 5.55170 5.63150 5.68916 5.73177 5.80280 5.82737 5.85976 5.98407 5.98853 6.02820 6.19352 6.27626 6.29499 6.32807 6.36354 6.50125 6.55561 6.61507 6.68690 6.82237 6.91655 6.96920 8.04163 8.09139 8.45360 8.58676 9.05645 9.81074 10.15000 11.29908 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.004583 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.340633 B = 6107.775034 C = 6155.364593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.101 4.101 4 C -0.127 4.127 5 C -0.041 4.041 6 C -0.111 4.111 7 C -0.114 4.114 8 C 0.585 3.415 9 O -0.521 6.521 10 N -0.629 5.629 11 C 0.095 3.905 12 C -0.109 4.109 13 H 0.090 0.910 14 C -0.118 4.118 15 C 0.124 3.876 16 N -0.594 5.594 17 C -0.250 4.250 18 H 0.086 0.914 19 C 0.020 3.980 20 N -0.908 5.908 21 Si 0.882 3.118 22 H -0.291 1.291 23 H -0.305 1.305 24 H -0.270 1.270 25 C 0.142 3.858 26 C 0.134 3.866 27 H 0.079 0.921 28 C -0.082 4.082 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.074 0.926 43 H 0.261 0.739 44 H 0.080 0.920 45 H 0.026 0.974 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 11.366 16.973 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.119 4.119 4 C -0.145 4.145 5 C -0.041 4.041 6 C -0.167 4.167 7 C -0.117 4.117 8 C 0.374 3.626 9 O -0.398 6.398 10 N -0.365 5.365 11 C -0.028 4.028 12 C -0.128 4.128 13 H 0.108 0.892 14 C -0.157 4.157 15 C -0.001 4.001 16 N -0.317 5.317 17 C -0.379 4.379 18 H 0.104 0.896 19 C -0.178 4.178 20 N -0.552 5.552 21 Si 0.713 3.287 22 H -0.219 1.219 23 H -0.233 1.233 24 H -0.196 1.196 25 C 0.015 3.985 26 C 0.030 3.970 27 H 0.097 0.903 28 C -0.101 4.101 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.043 0.957 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.822 11.472 16.327 20.528 hybrid contribution -0.548 -0.913 0.139 1.074 sum -5.370 10.558 16.466 20.284 Atomic orbital electron populations 1.20768 0.90926 1.02598 1.02561 1.19820 0.96215 0.92864 1.01291 1.21122 0.94124 0.97443 0.99245 1.20940 0.94059 0.97287 1.02195 1.19942 0.96564 0.91561 0.96075 1.20816 0.90398 1.01860 1.03651 1.19857 0.93707 0.93166 1.04984 1.17730 0.83994 0.81769 0.79065 1.90784 1.23559 1.82667 1.42741 1.50194 1.31426 1.10025 1.44890 1.24037 0.90014 0.95192 0.93525 1.22863 0.95800 0.95437 0.98683 0.89205 1.21863 0.96767 1.01835 0.95221 1.21236 0.88194 0.93742 0.96958 1.43768 1.10511 1.74573 1.02867 1.18950 1.25297 1.14095 0.79530 0.89637 1.25252 0.99331 0.98238 0.94943 1.69863 1.45915 1.37291 1.02120 0.86970 0.78072 0.86426 0.77273 1.21886 1.23310 1.19550 1.20150 0.92416 0.97358 0.88574 1.22348 0.96059 0.79466 0.99087 0.90315 1.21299 0.92849 0.98161 0.97760 0.91031 0.91513 0.91636 0.85947 0.85642 0.90067 0.92230 0.91093 0.89943 0.89923 0.91464 0.92248 0.95421 0.90778 0.92916 0.90187 0.95667 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.10 -1.22 5.87 -104.68 -0.61 -1.84 16 3 C -0.10 -1.13 9.69 -39.49 -0.38 -1.51 16 4 C -0.13 -1.52 9.67 -39.64 -0.38 -1.90 16 5 C -0.04 -0.59 5.91 -104.23 -0.62 -1.21 16 6 C -0.11 -1.53 8.67 36.00 0.31 -1.22 16 7 C -0.11 -1.87 5.71 -104.97 -0.60 -2.47 16 8 C 0.58 11.13 7.02 -12.33 -0.09 11.04 16 9 O -0.52 -11.80 14.15 5.32 0.08 -11.73 16 10 N -0.63 -10.48 3.35 -172.40 -0.58 -11.06 16 11 C 0.09 1.15 7.47 -1.42 -0.01 1.14 16 12 C -0.11 -1.51 4.34 -89.97 -0.39 -1.90 16 13 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.12 -1.97 5.66 -26.68 -0.15 -2.12 16 15 C 0.12 2.68 4.12 -3.93 -0.02 2.67 16 16 N -0.59 -14.56 2.78 -175.29 -0.49 -15.04 16 17 C -0.25 -7.37 10.00 -15.06 -0.15 -7.52 16 18 H 0.09 2.81 8.01 -52.49 -0.42 2.39 16 19 C 0.02 0.61 5.22 -17.43 -0.09 0.52 16 20 N -0.91 -28.86 13.97 55.49 0.78 -28.08 16 21 Si 0.88 22.65 24.36 -169.99 -4.14 18.51 16 22 H -0.29 -7.14 6.67 56.52 0.38 -6.76 16 23 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 24 H -0.27 -6.76 6.57 56.52 0.37 -6.38 16 25 C 0.14 3.00 6.21 -5.75 -0.04 2.96 16 26 C 0.13 2.21 4.22 -69.15 -0.29 1.92 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 C -0.08 -1.18 8.40 -39.18 -0.33 -1.51 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 36 H 0.07 1.08 6.78 -51.93 -0.35 0.72 16 37 H 0.08 0.92 5.65 -51.93 -0.29 0.62 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.57 7.27 -51.93 -0.38 0.20 16 42 H 0.07 1.78 4.06 -51.93 -0.21 1.57 16 43 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 44 H 0.08 1.92 6.36 -51.93 -0.33 1.59 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.13 1.80 5.95 -52.49 -0.31 1.49 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -35.10 354.56 -9.44 -44.54 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.95 Total: 1.11 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.48 Total: -3.60 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.29 Total: -54.18 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.14 Total: 18.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.10 -9.44 -44.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084795934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.359 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds