Wall clock time and date at job start Tue Mar 31 2020 10:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38386 * 119.92684 * 2 1 4 4 C 1.38334 * 120.29354 * 180.02562 * 3 2 1 5 5 C 1.37975 * 120.14882 * 0.02586 * 4 3 2 6 6 C 1.50696 * 120.07886 * 180.02562 * 5 4 3 7 7 C 1.39566 * 119.84955 * 359.97386 * 5 4 3 8 8 C 1.47843 * 120.14276 * 179.97438 * 7 5 4 9 9 O 1.21552 * 120.00242 * 323.12543 * 8 7 5 10 10 N 1.34777 * 120.00280 * 143.12975 * 8 7 5 11 11 C 1.49839 * 135.06023 * 355.28342 * 10 8 7 12 12 C 1.54654 * 85.09718 * 153.77520 * 11 10 8 13 13 H 1.09000 * 114.43812 * 140.13031 * 12 11 10 14 14 C 1.53008 * 110.84339 * 269.94175 * 12 11 10 15 15 C 1.53098 * 109.45004 * 143.89567 * 14 12 11 16 16 N 1.46621 * 108.04882 * 300.99691 * 15 14 12 17 17 C 1.36940 * 119.88956 * 237.33399 * 16 15 14 18 18 H 1.07995 * 120.00024 * 153.74195 * 17 16 15 19 19 C 1.38809 * 119.99678 * 333.73565 * 17 16 15 20 20 N 1.31625 * 119.99698 * 158.56001 * 19 17 16 21 21 Si 1.86803 * 120.00381 * 338.56232 * 19 17 16 22 22 H 1.48499 * 109.46827 * 95.24525 * 21 19 17 23 23 H 1.48502 * 109.46968 * 215.24444 * 21 19 17 24 24 H 1.48498 * 109.46851 * 335.24309 * 21 19 17 25 25 C 1.45413 * 119.51124 * 58.76383 * 16 15 14 26 26 C 1.46811 * 135.01637 * 175.24055 * 10 8 7 27 27 H 1.08998 * 110.91409 * 94.55088 * 26 10 8 28 28 C 1.37938 * 119.92991 * 180.26251 * 2 1 3 29 29 H 1.08998 * 109.47325 * 89.99820 * 1 2 3 30 30 H 1.09007 * 109.47009 * 209.99866 * 1 2 3 31 31 H 1.08994 * 109.47659 * 329.99374 * 1 2 3 32 32 H 1.07996 * 119.85104 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.92506 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47006 * 264.25095 * 6 5 4 35 35 H 1.08995 * 109.46980 * 24.24573 * 6 5 4 36 36 H 1.09002 * 109.47329 * 144.24881 * 6 5 4 37 37 H 1.08993 * 114.36410 * 39.81612 * 11 10 8 38 38 H 1.08997 * 113.83895 * 267.68274 * 11 10 8 39 39 H 1.09006 * 109.46960 * 23.89823 * 14 12 11 40 40 H 1.08997 * 109.48175 * 263.89401 * 14 12 11 41 41 H 1.09003 * 109.75451 * 60.64287 * 15 14 12 42 42 H 1.08994 * 109.75691 * 181.34544 * 15 14 12 43 43 H 0.97001 * 119.99943 * 180.02562 * 20 19 17 44 44 H 1.08999 * 107.69721 * 198.55598 * 25 16 15 45 45 H 1.09002 * 109.83925 * 80.36985 * 25 16 15 46 46 H 1.07998 * 120.07432 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5806 1.2082 -0.0005 5 6 4.2812 0.0196 -0.0016 6 6 5.7882 0.0310 -0.0016 7 6 3.5911 -1.1935 -0.0016 8 6 4.3353 -2.4710 -0.0033 9 8 5.3681 -2.5719 -0.6363 10 7 3.8685 -3.5238 0.6968 11 6 2.7224 -3.7494 1.6352 12 6 2.8091 -5.2236 1.1758 13 1 2.6631 -5.9534 1.9721 14 6 1.9176 -5.4671 -0.0436 15 6 2.5978 -6.4690 -0.9804 16 7 3.8933 -5.9104 -1.3796 17 6 4.1789 -5.7298 -2.7066 18 1 4.8868 -4.9721 -3.0083 19 6 3.5587 -6.5208 -3.6639 20 7 3.4844 -6.1077 -4.9114 21 14 2.8293 -8.1716 -3.1817 22 1 1.3809 -8.0088 -2.8974 23 1 3.0097 -9.1368 -4.2958 24 1 3.5177 -8.6815 -1.9687 25 6 4.8766 -5.5821 -0.3598 26 6 4.2722 -4.9264 0.8558 27 1 4.9085 -5.0513 1.7319 28 6 2.1952 -1.1954 -0.0055 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8898 0.5139 32 1 1.6537 2.1325 -0.0004 33 1 4.1134 2.1476 -0.0001 34 1 6.1523 -0.0682 -1.0242 35 1 6.1443 0.9704 0.4212 36 1 6.1579 -0.8007 0.5981 37 1 1.7978 -3.2512 1.3437 38 1 2.9762 -3.5997 2.6846 39 1 1.7584 -4.5265 -0.5710 40 1 0.9578 -5.8680 0.2821 41 1 2.7490 -7.4152 -0.4608 42 1 1.9777 -6.6281 -1.8626 43 1 3.0506 -6.6602 -5.5803 44 1 5.5986 -4.8970 -0.8041 45 1 5.4000 -6.4853 -0.0461 46 1 1.6552 -2.1307 -0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084795934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:14 Heat of formation + Delta-G solvation = 33.237911 kcal Electronic energy + Delta-G solvation = -27399.032480 eV Core-core repulsion = 23868.584204 eV Total energy + Delta-G solvation = -3530.448275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.00879 -40.52724 -38.84409 -37.28723 -34.70138 -33.99100 -32.80340 -32.56110 -30.49433 -29.94887 -28.79698 -26.00302 -25.54369 -25.26292 -24.32197 -22.87587 -22.26772 -20.91796 -19.37091 -18.76610 -17.90609 -17.31424 -17.16692 -17.11352 -16.60728 -16.22666 -15.57914 -15.50269 -15.22155 -15.10415 -14.68573 -14.49204 -14.43850 -14.15163 -14.04014 -13.86131 -13.78892 -13.52588 -13.42597 -12.88184 -12.77964 -12.69077 -12.58807 -12.54127 -12.44245 -12.32635 -12.10255 -11.95374 -11.54978 -11.37207 -11.33471 -10.75256 -10.51484 -9.97935 -9.60550 -9.42091 -8.94009 -8.18731 -5.51009 -0.02250 0.35090 1.26530 1.40361 1.51011 1.82353 1.87064 2.38827 2.75319 3.01965 3.28206 3.39695 3.40290 3.78468 3.84424 3.86255 4.02881 4.06221 4.23901 4.26215 4.29973 4.38045 4.46012 4.53987 4.55133 4.62562 4.67196 4.70150 4.71498 4.78843 4.81740 4.84233 4.87015 4.98238 4.99532 5.03682 5.10525 5.17535 5.20068 5.31501 5.33228 5.51957 5.56991 5.59050 5.85204 5.98387 6.09533 6.77470 6.92653 7.21924 7.63162 7.96418 9.02440 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.004583 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.340633 B = 6107.775034 C = 6155.364593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.064 4.064 6 C -0.103 4.103 7 C -0.144 4.144 8 C 0.570 3.430 9 O -0.583 6.583 10 N -0.638 5.638 11 C 0.107 3.893 12 C -0.095 4.095 13 H 0.140 0.860 14 C -0.112 4.112 15 C 0.115 3.885 16 N -0.607 5.607 17 C -0.248 4.248 18 H 0.020 0.980 19 C -0.042 4.042 20 N -0.964 5.964 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.312 1.312 24 H -0.253 1.253 25 C 0.141 3.859 26 C 0.122 3.878 27 H 0.113 0.887 28 C -0.095 4.095 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.039 0.961 40 H 0.103 0.897 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.262 0.738 44 H 0.032 0.968 45 H 0.038 0.962 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 11.499 21.127 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.112 4.112 4 C -0.140 4.140 5 C -0.065 4.065 6 C -0.160 4.160 7 C -0.147 4.147 8 C 0.361 3.639 9 O -0.464 6.464 10 N -0.373 5.373 11 C -0.013 4.013 12 C -0.114 4.114 13 H 0.158 0.842 14 C -0.150 4.150 15 C -0.009 4.009 16 N -0.331 5.331 17 C -0.377 4.377 18 H 0.038 0.962 19 C -0.236 4.236 20 N -0.610 5.610 21 Si 0.794 3.206 22 H -0.192 1.192 23 H -0.242 1.242 24 H -0.177 1.177 25 C 0.015 3.985 26 C 0.018 3.982 27 H 0.131 0.869 28 C -0.113 4.113 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.178 0.822 33 H 0.173 0.827 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.140 0.860 39 H 0.058 0.942 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.410 11.595 20.572 25.068 hybrid contribution 0.600 -0.831 -1.188 1.569 sum -7.811 10.764 19.385 23.508 Atomic orbital electron populations 1.20837 0.88532 1.04334 1.02981 1.20215 0.97927 0.92240 0.99706 1.21594 0.93877 0.98654 0.97095 1.21296 0.94805 0.97234 1.00698 1.20157 0.96704 0.92274 0.97352 1.20712 0.90786 1.02595 1.01872 1.19880 0.94710 0.92427 1.07635 1.18374 0.83632 0.83279 0.78608 1.90741 1.26341 1.83928 1.45419 1.50461 1.32527 1.09396 1.44932 1.24303 0.88962 0.93517 0.94476 1.22848 0.92194 0.97853 0.98491 0.84226 1.21779 0.98920 0.99154 0.95193 1.21399 0.86309 0.96001 0.97220 1.43778 1.12736 1.75252 1.01384 1.18647 1.23957 1.12466 0.82666 0.96214 1.26034 1.00718 1.02244 0.94596 1.70037 1.48266 1.38921 1.03803 0.85624 0.78529 0.79497 0.76957 1.19204 1.24169 1.17743 1.20186 0.91611 0.97143 0.89521 1.22525 0.98756 0.79433 0.97464 0.86913 1.21360 0.91938 0.99295 0.98711 0.91112 0.90708 0.89082 0.82206 0.82710 0.92637 0.88856 0.93401 0.88734 0.85955 0.94243 0.87915 0.93113 0.93461 0.92905 0.94994 0.94484 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.01 71.23 0.71 -0.92 16 2 C -0.10 -2.18 5.87 -19.90 -0.12 -2.30 16 3 C -0.09 -1.80 9.69 22.33 0.22 -1.59 16 4 C -0.12 -2.71 9.67 22.23 0.21 -2.49 16 5 C -0.06 -1.91 5.91 -19.61 -0.12 -2.03 16 6 C -0.10 -3.07 8.67 71.23 0.62 -2.45 16 7 C -0.14 -4.87 5.71 -20.09 -0.11 -4.99 16 8 C 0.57 23.19 7.02 86.79 0.61 23.80 16 9 O -0.58 -29.51 14.15 -3.88 -0.05 -29.57 16 10 N -0.64 -21.24 3.35 -817.63 -2.74 -23.98 16 11 C 0.11 2.21 7.47 86.22 0.64 2.86 16 12 C -0.10 -2.22 4.34 -10.31 -0.04 -2.26 16 13 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 14 C -0.11 -3.38 5.66 30.63 0.17 -3.21 16 15 C 0.11 4.75 4.12 86.39 0.36 5.10 16 16 N -0.61 -30.69 2.78 -708.48 -1.97 -32.66 16 17 C -0.25 -15.66 10.00 84.03 0.84 -14.82 16 18 H 0.02 1.47 8.01 -2.91 -0.02 1.45 16 19 C -0.04 -2.63 5.22 84.86 0.44 -2.19 16 20 N -0.96 -64.91 13.97 21.65 0.30 -64.61 16 21 Si 0.97 47.98 24.36 68.60 1.67 49.66 16 22 H -0.27 -12.04 6.67 99.48 0.66 -11.38 16 23 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 24 H -0.25 -11.74 6.57 99.48 0.65 -11.09 16 25 C 0.14 6.22 6.21 85.86 0.53 6.75 16 26 C 0.12 3.86 4.22 44.03 0.19 4.05 16 27 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 28 C -0.09 -2.66 8.40 22.53 0.19 -2.47 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 0.99 8.09 -2.38 -0.02 0.97 16 31 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 32 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 2.00 8.05 -2.39 -0.02 1.98 16 36 H 0.05 1.61 6.78 -2.39 -0.02 1.59 16 37 H 0.09 1.76 5.65 -2.39 -0.01 1.75 16 38 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 1.41 7.70 -2.38 -0.02 1.39 16 40 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.89 7.27 -2.39 -0.02 1.87 16 42 H 0.05 2.20 4.06 -2.39 -0.01 2.19 16 43 H 0.26 16.53 8.31 -92.71 -0.77 15.76 16 44 H 0.03 1.69 6.36 -2.39 -0.02 1.67 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.13 3.46 5.95 -2.91 -0.02 3.45 16 Total: -1.00 -88.92 354.56 3.44 -85.49 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.88 Total: 14.82 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.34 Total: 0.84 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -4.41 Total: -121.24 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.05 Total: -29.57 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.67 Total: 49.66 kcal Total: -88.92 3.44 -85.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084795934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.726 kcal (2) G-P(sol) polarization free energy of solvation -88.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds