Wall clock time and date at job start Tue Mar 31 2020 10:42:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50711 * 1
3 3 C 1.38356 * 119.92594 * 2 1
4 4 C 1.38360 * 120.29490 * 180.02562 * 3 2 1
5 5 C 1.50691 * 119.93045 * 179.97438 * 4 3 2
6 6 C 1.37963 * 120.14154 * 0.02562 * 4 3 2
7 7 C 1.39581 * 119.84973 * 359.97135 * 6 4 3
8 8 C 1.47843 * 120.13852 * 179.97438 * 7 6 4
9 9 O 1.21550 * 120.00202 * 6.78932 * 8 7 6
10 10 N 1.34781 * 120.00136 * 187.05263 * 8 7 6
11 11 C 1.47291 * 136.53739 * 5.20434 * 10 8 7
12 12 C 1.54398 * 87.48528 * 151.44682 * 11 10 8
13 13 H 1.09003 * 115.76811 * 141.81868 * 12 11 10
14 14 C 1.53063 * 111.60401 * 274.19054 * 12 11 10
15 15 C 1.53154 * 109.21173 * 142.37767 * 14 12 11
16 16 N 1.46534 * 108.25115 * 301.59344 * 15 14 12
17 17 C 1.36937 * 119.73796 * 236.44094 * 16 15 14
18 18 H 1.08000 * 120.00077 * 25.65095 * 17 16 15
19 19 C 1.38818 * 120.00088 * 205.65657 * 17 16 15
20 20 N 1.31616 * 119.99770 * 15.75809 * 19 17 16
21 21 Si 1.86797 * 120.00075 * 195.76366 * 19 17 16
22 22 H 1.48504 * 109.47186 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47255 * 119.99748 * 21 19 17
24 24 H 1.48502 * 109.47199 * 239.99662 * 21 19 17
25 25 C 1.45707 * 120.52419 * 56.42187 * 16 15 14
26 26 C 1.46460 * 136.54877 * 185.57078 * 10 8 7
27 27 H 1.09001 * 111.44465 * 96.36529 * 26 10 8
28 28 C 1.37956 * 119.92595 * 180.26294 * 2 1 3
29 29 H 1.09001 * 109.46653 * 89.99598 * 1 2 3
30 30 H 1.09000 * 109.46775 * 209.99347 * 1 2 3
31 31 H 1.08996 * 109.47113 * 329.99547 * 1 2 3
32 32 H 1.08002 * 119.85427 * 0.02562 * 3 2 1
33 33 H 1.09006 * 109.47011 * 270.02624 * 5 4 3
34 34 H 1.09002 * 109.47305 * 30.02351 * 5 4 3
35 35 H 1.08997 * 109.47506 * 150.02394 * 5 4 3
36 36 H 1.08000 * 120.07257 * 180.02562 * 6 4 3
37 37 H 1.09000 * 113.52791 * 266.06467 * 11 10 8
38 38 H 1.08996 * 113.53272 * 36.69641 * 11 10 8
39 39 H 1.08996 * 109.51755 * 262.30084 * 14 12 11
40 40 H 1.09001 * 109.51165 * 22.41236 * 14 12 11
41 41 H 1.08999 * 109.70536 * 61.28044 * 15 14 12
42 42 H 1.08992 * 109.70824 * 181.85926 * 15 14 12
43 43 H 0.97007 * 119.99953 * 180.02562 * 20 19 17
44 44 H 1.09001 * 108.78409 * 199.10944 * 25 16 15
45 45 H 1.08997 * 108.78904 * 80.89773 * 25 16 15
46 46 H 1.08001 * 120.07802 * 0.02562 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1973 1.1991 0.0000
4 6 3.5809 1.2080 -0.0005
5 6 4.3244 2.5187 -0.0011
6 6 4.2814 0.0194 -0.0016
7 6 3.5911 -1.1938 -0.0015
8 6 4.3352 -2.4713 -0.0033
9 8 5.5445 -2.4704 0.1197
10 7 3.6733 -3.6366 -0.1465
11 6 2.2854 -4.0521 -0.4119
12 6 2.8639 -5.3201 -1.0762
13 1 2.3102 -6.2423 -0.8995
14 6 3.2093 -5.0780 -2.5475
15 6 4.4966 -5.8320 -2.8937
16 7 5.5607 -5.3550 -2.0064
17 6 6.7126 -4.8428 -2.5413
18 1 6.7020 -4.4071 -3.5294
19 6 7.8939 -4.8838 -1.8134
20 7 7.9934 -5.6722 -0.7642
21 14 9.3423 -3.8201 -2.3231
22 1 8.9774 -3.0305 -3.5267
23 1 9.6939 -2.8979 -1.2135
24 1 10.5075 -4.6865 -2.6346
25 6 5.4027 -5.4208 -0.5594
26 6 4.0079 -5.0618 -0.1023
27 1 3.8015 -5.4893 0.8789
28 6 2.1954 -1.1956 -0.0055
29 1 -0.3633 0.0001 -1.0277
30 1 -0.3633 -0.8901 0.5137
31 1 -0.3633 0.8899 0.5139
32 1 1.6537 2.1323 0.0004
33 1 4.5028 2.8348 -1.0290
34 1 3.7299 3.2739 0.5131
35 1 5.2781 2.3958 0.5120
36 1 5.3613 0.0276 -0.0016
37 1 1.7123 -4.2575 0.4922
38 1 1.7599 -3.3961 -1.1059
39 1 2.3957 -5.4387 -3.1767
40 1 3.3548 -4.0110 -2.7165
41 1 4.3470 -6.9016 -2.7463
42 1 4.7682 -5.6386 -3.9314
43 1 8.8188 -5.7006 -0.2554
44 1 6.1114 -4.7336 -0.0973
45 1 5.6313 -6.4334 -0.2270
46 1 1.6554 -2.1310 -0.0102
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001084796716.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:19
Heat of formation + Delta-G solvation = 58.870096 kcal
Electronic energy + Delta-G solvation = -27190.430526 eV
Core-core repulsion = 23661.093745 eV
Total energy + Delta-G solvation = -3529.336781 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.71749 -39.36347 -37.31970 -35.21353 -33.64176 -32.31725 -31.92194 -30.09384
-28.93755 -27.42284 -26.98770 -26.60755 -24.01284 -23.62346 -22.44475 -21.09884
-20.58074 -19.61367 -17.80993 -17.00180 -16.30604 -15.90212 -15.74299 -15.66273
-14.87375 -14.34036 -14.06265 -13.94318 -13.64159 -13.40891 -13.33158 -13.30084
-13.15234 -12.99184 -12.67840 -12.51751 -12.33470 -12.04336 -11.88852 -11.56647
-11.50832 -11.37391 -11.14621 -10.94512 -10.62234 -10.56732 -10.43274 -10.12608
-9.82966 -9.73033 -9.50078 -8.93873 -8.76457 -8.60206 -8.25387 -8.07681
-6.53412 -5.60721 -3.01880 1.01190 1.34469 3.20759 3.28415 3.51471
3.59782 3.60431 4.05124 4.60110 4.61966 4.66611 4.67435 4.74775
5.08280 5.16703 5.21306 5.25787 5.33016 5.41879 5.43814 5.48845
5.52015 5.53699 5.56375 5.65021 5.67239 5.72066 5.77110 5.91007
5.98404 6.05386 6.15872 6.16735 6.33205 6.42483 6.43836 6.47463
6.52013 6.57605 6.65166 6.82371 6.95032 7.03989 7.53133 7.81390
7.99044 8.34805 8.62809 8.79793 9.40956 10.05563 10.53024 11.47789
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013103 B = 0.005165 C = 0.004040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2136.361880 B = 5419.648913 C = 6928.796732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.096 4.096
3 C -0.106 4.106
4 C -0.093 4.093
5 C -0.113 4.113
6 C -0.069 4.069
7 C -0.108 4.108
8 C 0.578 3.422
9 O -0.507 6.507
10 N -0.627 5.627
11 C 0.089 3.911
12 C -0.112 4.112
13 H 0.092 0.908
14 C -0.116 4.116
15 C 0.149 3.851
16 N -0.583 5.583
17 C -0.250 4.250
18 H 0.061 0.939
19 C 0.012 3.988
20 N -0.904 5.904
21 Si 0.900 3.100
22 H -0.280 1.280
23 H -0.288 1.288
24 H -0.293 1.293
25 C 0.167 3.833
26 C 0.118 3.882
27 H 0.073 0.927
28 C -0.106 4.106
29 H 0.070 0.930
30 H 0.066 0.934
31 H 0.065 0.935
32 H 0.121 0.879
33 H 0.071 0.929
34 H 0.065 0.935
35 H 0.068 0.932
36 H 0.135 0.865
37 H 0.078 0.922
38 H 0.076 0.924
39 H 0.055 0.945
40 H 0.060 0.940
41 H 0.019 0.981
42 H 0.055 0.945
43 H 0.251 0.749
44 H 0.101 0.899
45 H 0.030 0.970
46 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.953 9.902 2.504 20.656
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.096 4.096
3 C -0.124 4.124
4 C -0.093 4.093
5 C -0.169 4.169
6 C -0.088 4.088
7 C -0.111 4.111
8 C 0.368 3.632
9 O -0.382 6.382
10 N -0.362 5.362
11 C -0.034 4.034
12 C -0.131 4.131
13 H 0.110 0.890
14 C -0.155 4.155
15 C 0.022 3.978
16 N -0.306 5.306
17 C -0.379 4.379
18 H 0.079 0.921
19 C -0.186 4.186
20 N -0.548 5.548
21 Si 0.730 3.270
22 H -0.205 1.205
23 H -0.215 1.215
24 H -0.220 1.220
25 C 0.041 3.959
26 C 0.015 3.985
27 H 0.091 0.909
28 C -0.124 4.124
29 H 0.088 0.912
30 H 0.085 0.915
31 H 0.084 0.916
32 H 0.139 0.861
33 H 0.089 0.911
34 H 0.084 0.916
35 H 0.087 0.913
36 H 0.153 0.847
37 H 0.096 0.904
38 H 0.094 0.906
39 H 0.073 0.927
40 H 0.079 0.921
41 H 0.037 0.963
42 H 0.074 0.926
43 H 0.061 0.939
44 H 0.119 0.881
45 H 0.048 0.952
46 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -16.992 10.092 2.712 19.949
hybrid contribution 0.650 0.601 -0.036 0.887
sum -16.342 10.694 2.676 19.712
Atomic orbital electron populations
1.20764 0.90977 1.02695 1.02331 1.19820 0.96087 0.92897 1.00823
1.21021 0.93485 0.97474 1.00405 1.19847 0.93737 0.95257 1.00459
1.20781 1.00112 0.93560 1.02479 1.21202 1.00825 0.90395 0.96396
1.20103 0.93628 0.93833 1.03542 1.17624 0.86570 0.81651 0.77382
1.90871 1.12899 1.86034 1.48402 1.49279 1.10245 1.05664 1.71062
1.23514 0.85685 0.95282 0.98961 1.22814 0.97093 0.96746 0.96468
0.88958 1.21842 0.99231 1.01646 0.92804 1.20715 0.87835 0.94693
0.94559 1.43440 1.15186 1.71695 1.00248 1.19103 0.85708 1.31590
1.01544 0.92092 1.24891 0.97114 0.98182 0.98415 1.70026 1.26201
1.37956 1.20664 0.86266 0.82544 0.80313 0.77847 1.20531 1.21500
1.22025 1.20186 0.90401 1.00389 0.84909 1.22673 0.99951 0.78509
0.97405 0.90896 1.21655 0.93304 0.98491 0.98964 0.91167 0.91521
0.91622 0.86058 0.91066 0.91615 0.91259 0.84728 0.90358 0.90578
0.92680 0.92115 0.96292 0.92632 0.93939 0.88090 0.95248 0.84758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16
2 C -0.10 -1.11 5.87 -104.68 -0.61 -1.72 16
3 C -0.11 -1.20 9.34 -39.49 -0.37 -1.57 16
4 C -0.09 -1.20 5.87 -104.68 -0.61 -1.81 16
5 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16
6 C -0.07 -1.12 9.24 -39.18 -0.36 -1.48 16
7 C -0.11 -1.85 5.87 -104.97 -0.62 -2.47 16
8 C 0.58 12.18 7.96 -12.33 -0.10 12.08 16
9 O -0.51 -13.21 15.54 5.32 0.08 -13.13 16
10 N -0.63 -11.71 3.30 -188.63 -0.62 -12.34 16
11 C 0.09 1.19 5.56 -11.37 -0.06 1.13 16
12 C -0.11 -1.71 4.57 -90.14 -0.41 -2.13 16
13 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16
14 C -0.12 -1.96 5.71 -26.62 -0.15 -2.11 16
15 C 0.15 3.13 6.46 -3.94 -0.03 3.11 16
16 N -0.58 -15.21 3.02 -174.89 -0.53 -15.73 16
17 C -0.25 -7.32 9.51 -15.06 -0.14 -7.46 16
18 H 0.06 1.78 7.84 -52.49 -0.41 1.36 16
19 C 0.01 0.37 4.91 -17.43 -0.09 0.29 16
20 N -0.90 -27.89 11.05 55.49 0.61 -27.28 16
21 Si 0.90 23.86 29.58 -169.99 -5.03 18.84 16
22 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16
23 H -0.29 -7.84 7.11 56.52 0.40 -7.43 16
24 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16
25 C 0.17 4.23 4.56 -5.42 -0.02 4.20 16
26 C 0.12 2.29 4.03 -77.69 -0.31 1.98 16
27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
28 C -0.11 -1.45 8.81 -39.19 -0.35 -1.79 16
29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16
31 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16
32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16
33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
34 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16
35 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16
36 H 0.13 2.33 7.67 -52.49 -0.40 1.93 16
37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
38 H 0.08 0.92 6.62 -51.93 -0.34 0.58 16
39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
40 H 0.06 1.15 7.69 -51.93 -0.40 0.75 16
41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
42 H 0.06 1.16 7.87 -51.93 -0.41 0.75 16
43 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16
44 H 0.10 3.01 5.01 -51.93 -0.26 2.75 16
45 H 0.03 0.80 7.99 -51.93 -0.41 0.38 16
46 H 0.13 1.62 4.20 -52.49 -0.22 1.40 16
LS Contribution 362.72 15.07 5.47 5.47
Total: -1.00 -35.33 362.72 -10.60 -45.93
By element:
Atomic # 1 Polarization: 6.35 SS G_CDS: -7.06 Total: -0.70 kcal
Atomic # 6 Polarization: 2.47 SS G_CDS: -3.52 Total: -1.05 kcal
Atomic # 7 Polarization: -54.81 SS G_CDS: -0.54 Total: -55.35 kcal
Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal
Atomic # 14 Polarization: 23.86 SS G_CDS: -5.03 Total: 18.84 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -35.33 -10.60 -45.93 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084796716.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.797 kcal
(2) G-P(sol) polarization free energy of solvation -35.331 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.466 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.927 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.870 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds