Wall clock time and date at job start Tue Mar 31 2020 10:42:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50711 * 1
3 3 C 1.38356 * 119.92594 * 2 1
4 4 C 1.38360 * 120.29490 * 180.02562 * 3 2 1
5 5 C 1.50691 * 119.93045 * 179.97438 * 4 3 2
6 6 C 1.37963 * 120.14154 * 0.02562 * 4 3 2
7 7 C 1.39581 * 119.84973 * 359.97135 * 6 4 3
8 8 C 1.47843 * 120.13852 * 179.97438 * 7 6 4
9 9 O 1.21550 * 120.00202 * 6.78932 * 8 7 6
10 10 N 1.34781 * 120.00136 * 187.05263 * 8 7 6
11 11 C 1.47291 * 136.53739 * 5.20434 * 10 8 7
12 12 C 1.54398 * 87.48528 * 151.44682 * 11 10 8
13 13 H 1.09003 * 115.76811 * 141.81868 * 12 11 10
14 14 C 1.53063 * 111.60401 * 274.19054 * 12 11 10
15 15 C 1.53154 * 109.21173 * 142.37767 * 14 12 11
16 16 N 1.46534 * 108.25115 * 301.59344 * 15 14 12
17 17 C 1.36937 * 119.73796 * 236.44094 * 16 15 14
18 18 H 1.08000 * 120.00077 * 25.65095 * 17 16 15
19 19 C 1.38818 * 120.00088 * 205.65657 * 17 16 15
20 20 N 1.31616 * 119.99770 * 15.75809 * 19 17 16
21 21 Si 1.86797 * 120.00075 * 195.76366 * 19 17 16
22 22 H 1.48504 * 109.47186 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47255 * 119.99748 * 21 19 17
24 24 H 1.48502 * 109.47199 * 239.99662 * 21 19 17
25 25 C 1.45707 * 120.52419 * 56.42187 * 16 15 14
26 26 C 1.46460 * 136.54877 * 185.57078 * 10 8 7
27 27 H 1.09001 * 111.44465 * 96.36529 * 26 10 8
28 28 C 1.37956 * 119.92595 * 180.26294 * 2 1 3
29 29 H 1.09001 * 109.46653 * 89.99598 * 1 2 3
30 30 H 1.09000 * 109.46775 * 209.99347 * 1 2 3
31 31 H 1.08996 * 109.47113 * 329.99547 * 1 2 3
32 32 H 1.08002 * 119.85427 * 0.02562 * 3 2 1
33 33 H 1.09006 * 109.47011 * 270.02624 * 5 4 3
34 34 H 1.09002 * 109.47305 * 30.02351 * 5 4 3
35 35 H 1.08997 * 109.47506 * 150.02394 * 5 4 3
36 36 H 1.08000 * 120.07257 * 180.02562 * 6 4 3
37 37 H 1.09000 * 113.52791 * 266.06467 * 11 10 8
38 38 H 1.08996 * 113.53272 * 36.69641 * 11 10 8
39 39 H 1.08996 * 109.51755 * 262.30084 * 14 12 11
40 40 H 1.09001 * 109.51165 * 22.41236 * 14 12 11
41 41 H 1.08999 * 109.70536 * 61.28044 * 15 14 12
42 42 H 1.08992 * 109.70824 * 181.85926 * 15 14 12
43 43 H 0.97007 * 119.99953 * 180.02562 * 20 19 17
44 44 H 1.09001 * 108.78409 * 199.10944 * 25 16 15
45 45 H 1.08997 * 108.78904 * 80.89773 * 25 16 15
46 46 H 1.08001 * 120.07802 * 0.02562 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1973 1.1991 0.0000
4 6 3.5809 1.2080 -0.0005
5 6 4.3244 2.5187 -0.0011
6 6 4.2814 0.0194 -0.0016
7 6 3.5911 -1.1938 -0.0015
8 6 4.3352 -2.4713 -0.0033
9 8 5.5445 -2.4704 0.1197
10 7 3.6733 -3.6366 -0.1465
11 6 2.2854 -4.0521 -0.4119
12 6 2.8639 -5.3201 -1.0762
13 1 2.3102 -6.2423 -0.8995
14 6 3.2093 -5.0780 -2.5475
15 6 4.4966 -5.8320 -2.8937
16 7 5.5607 -5.3550 -2.0064
17 6 6.7126 -4.8428 -2.5413
18 1 6.7020 -4.4071 -3.5294
19 6 7.8939 -4.8838 -1.8134
20 7 7.9934 -5.6722 -0.7642
21 14 9.3423 -3.8201 -2.3231
22 1 8.9774 -3.0305 -3.5267
23 1 9.6939 -2.8979 -1.2135
24 1 10.5075 -4.6865 -2.6346
25 6 5.4027 -5.4208 -0.5594
26 6 4.0079 -5.0618 -0.1023
27 1 3.8015 -5.4893 0.8789
28 6 2.1954 -1.1956 -0.0055
29 1 -0.3633 0.0001 -1.0277
30 1 -0.3633 -0.8901 0.5137
31 1 -0.3633 0.8899 0.5139
32 1 1.6537 2.1323 0.0004
33 1 4.5028 2.8348 -1.0290
34 1 3.7299 3.2739 0.5131
35 1 5.2781 2.3958 0.5120
36 1 5.3613 0.0276 -0.0016
37 1 1.7123 -4.2575 0.4922
38 1 1.7599 -3.3961 -1.1059
39 1 2.3957 -5.4387 -3.1767
40 1 3.3548 -4.0110 -2.7165
41 1 4.3470 -6.9016 -2.7463
42 1 4.7682 -5.6386 -3.9314
43 1 8.8188 -5.7006 -0.2554
44 1 6.1114 -4.7336 -0.0973
45 1 5.6313 -6.4334 -0.2270
46 1 1.6554 -2.1310 -0.0102
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001084796716.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:18
Heat of formation + Delta-G solvation = 36.068013 kcal
Electronic energy + Delta-G solvation = -27191.419298 eV
Core-core repulsion = 23661.093745 eV
Total energy + Delta-G solvation = -3530.325553 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.11332 -40.48427 -38.85900 -37.10876 -34.56409 -34.01988 -33.24297 -31.93580
-30.46622 -28.68064 -28.20935 -27.58027 -25.80380 -25.09935 -23.86465 -22.68028
-21.57890 -20.99001 -19.56511 -18.58104 -17.55292 -17.45553 -17.34578 -16.88171
-16.37583 -15.98616 -15.68849 -15.28685 -15.09039 -14.79233 -14.65928 -14.56830
-14.27909 -14.07314 -13.98254 -13.81336 -13.52765 -13.32426 -13.19238 -12.87425
-12.76113 -12.71402 -12.49547 -12.44840 -12.38875 -12.22247 -12.00825 -11.97502
-11.74227 -11.51171 -11.02182 -10.71464 -10.39929 -9.86640 -9.59495 -9.49668
-8.68432 -7.87944 -5.30585 -0.10992 0.33691 1.30489 1.38136 1.43429
1.90645 1.93006 2.45686 2.83962 3.26509 3.38335 3.44120 3.71417
3.77294 3.84710 3.93709 4.10717 4.18877 4.33816 4.34926 4.37276
4.45956 4.48429 4.61943 4.65911 4.66894 4.73348 4.76628 4.79431
4.86088 4.91993 4.93852 4.99388 5.05408 5.08880 5.16029 5.30085
5.32110 5.36228 5.42414 5.53081 5.54130 5.56682 5.70142 5.79395
5.98258 6.37767 6.91056 7.17472 7.27670 7.95049 8.32963 9.16587
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013103 B = 0.005165 C = 0.004040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2136.361880 B = 5419.648913 C = 6928.796732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.088 4.088
3 C -0.098 4.098
4 C -0.093 4.093
5 C -0.112 4.112
6 C -0.103 4.103
7 C -0.135 4.135
8 C 0.565 3.435
9 O -0.585 6.585
10 N -0.633 5.633
11 C 0.102 3.898
12 C -0.098 4.098
13 H 0.137 0.863
14 C -0.105 4.105
15 C 0.139 3.861
16 N -0.601 5.601
17 C -0.254 4.254
18 H 0.056 0.944
19 C -0.043 4.043
20 N -0.931 5.931
21 Si 0.952 3.048
22 H -0.270 1.270
23 H -0.304 1.304
24 H -0.280 1.280
25 C 0.181 3.819
26 C 0.103 3.897
27 H 0.095 0.905
28 C -0.104 4.104
29 H 0.084 0.916
30 H 0.079 0.921
31 H 0.084 0.916
32 H 0.160 0.840
33 H 0.078 0.922
34 H 0.094 0.906
35 H 0.058 0.942
36 H 0.100 0.900
37 H 0.123 0.877
38 H 0.100 0.900
39 H 0.104 0.896
40 H 0.036 0.964
41 H 0.030 0.970
42 H 0.049 0.951
43 H 0.244 0.756
44 H 0.046 0.954
45 H -0.003 1.003
46 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.539 11.206 1.921 26.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.088 4.088
3 C -0.115 4.115
4 C -0.093 4.093
5 C -0.169 4.169
6 C -0.122 4.122
7 C -0.138 4.138
8 C 0.356 3.644
9 O -0.466 6.466
10 N -0.367 5.367
11 C -0.019 4.019
12 C -0.117 4.117
13 H 0.155 0.845
14 C -0.144 4.144
15 C 0.014 3.986
16 N -0.324 5.324
17 C -0.385 4.385
18 H 0.074 0.926
19 C -0.238 4.238
20 N -0.578 5.578
21 Si 0.781 3.219
22 H -0.194 1.194
23 H -0.232 1.232
24 H -0.207 1.207
25 C 0.054 3.946
26 C -0.002 4.002
27 H 0.112 0.888
28 C -0.122 4.122
29 H 0.102 0.898
30 H 0.098 0.902
31 H 0.103 0.897
32 H 0.178 0.822
33 H 0.097 0.903
34 H 0.113 0.887
35 H 0.077 0.923
36 H 0.118 0.882
37 H 0.140 0.860
38 H 0.118 0.882
39 H 0.122 0.878
40 H 0.055 0.945
41 H 0.048 0.952
42 H 0.067 0.933
43 H 0.053 0.947
44 H 0.064 0.936
45 H 0.014 0.986
46 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -22.667 11.370 2.090 25.445
hybrid contribution 2.321 0.203 0.112 2.333
sum -20.346 11.574 2.202 23.511
Atomic orbital electron populations
1.20864 0.87613 1.04384 1.03680 1.20313 0.98306 0.91881 0.98327
1.21503 0.92625 0.99272 0.98140 1.20140 0.94928 0.94853 0.99425
1.20848 0.99932 0.92852 1.03252 1.21154 0.99588 0.92148 0.99287
1.19940 0.95243 0.91818 1.06796 1.18420 0.86160 0.83552 0.76229
1.90819 1.16269 1.87305 1.52160 1.49461 1.12961 1.04599 1.69715
1.23788 0.83218 0.93810 1.01070 1.22864 0.94901 0.99798 0.94093
0.84482 1.21724 0.98094 0.99508 0.95074 1.20974 0.88451 0.95798
0.93367 1.43682 1.15547 1.72021 1.01200 1.19364 0.87115 1.30757
1.01259 0.92646 1.25562 0.99600 0.99659 0.98977 1.70176 1.26277
1.39558 1.21792 0.85430 0.80416 0.78846 0.77176 1.19412 1.23218
1.20670 1.19794 0.93312 0.97121 0.84370 1.22755 0.97654 0.79895
0.99874 0.88768 1.21829 0.91381 1.00482 0.98522 0.89758 0.90207
0.89733 0.82238 0.90293 0.88706 0.92288 0.88227 0.85964 0.88233
0.87814 0.94511 0.95182 0.93274 0.94717 0.93591 0.98559 0.82814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.10 10.01 71.24 0.71 -0.39 16
2 C -0.09 -1.66 5.87 -19.90 -0.12 -1.78 16
3 C -0.10 -1.86 9.34 22.33 0.21 -1.65 16
4 C -0.09 -2.32 5.87 -19.90 -0.12 -2.44 16
5 C -0.11 -2.11 10.01 71.23 0.71 -1.39 16
6 C -0.10 -3.54 9.24 22.53 0.21 -3.33 16
7 C -0.13 -4.75 5.87 -20.09 -0.12 -4.87 16
8 C 0.56 25.20 7.96 86.79 0.69 25.89 16
9 O -0.58 -33.74 15.54 -3.87 -0.06 -33.80 16
10 N -0.63 -23.54 3.30 -868.99 -2.87 -26.41 16
11 C 0.10 2.28 5.56 81.20 0.45 2.73 16
12 C -0.10 -2.61 4.57 -10.48 -0.05 -2.66 16
13 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16
14 C -0.11 -3.24 5.71 30.67 0.18 -3.07 16
15 C 0.14 5.80 6.46 86.42 0.56 6.35 16
16 N -0.60 -32.67 3.02 -707.22 -2.14 -34.81 16
17 C -0.25 -15.70 9.51 84.03 0.80 -14.90 16
18 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16
19 C -0.04 -2.71 4.91 84.86 0.42 -2.29 16
20 N -0.93 -61.56 11.05 21.65 0.24 -61.32 16
21 Si 0.95 52.04 29.58 68.60 2.03 54.07 16
22 H -0.27 -14.07 7.11 99.48 0.71 -13.36 16
23 H -0.30 -17.29 7.11 99.48 0.71 -16.59 16
24 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16
25 C 0.18 9.66 4.56 85.91 0.39 10.05 16
26 C 0.10 3.94 4.03 38.69 0.16 4.10 16
27 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16
28 C -0.10 -2.57 8.81 22.52 0.20 -2.37 16
29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16
30 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16
31 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16
32 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16
33 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16
34 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16
35 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16
36 H 0.10 3.99 7.67 -2.91 -0.02 3.97 16
37 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16
38 H 0.10 1.84 6.62 -2.39 -0.02 1.83 16
39 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16
40 H 0.04 1.32 7.69 -2.39 -0.02 1.30 16
41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
42 H 0.05 2.06 7.87 -2.39 -0.02 2.04 16
43 H 0.24 15.73 8.31 -92.70 -0.77 14.96 16
44 H 0.05 2.97 5.01 -2.39 -0.01 2.96 16
45 H 0.00 -0.19 7.99 -2.39 -0.02 -0.21 16
46 H 0.15 3.01 4.20 -2.91 -0.01 3.00 16
Total: -1.00 -89.95 362.72 3.45 -86.50
By element:
Atomic # 1 Polarization: 6.82 SS G_CDS: 0.97 Total: 7.79 kcal
Atomic # 6 Polarization: 2.70 SS G_CDS: 5.28 Total: 7.98 kcal
Atomic # 7 Polarization: -117.76 SS G_CDS: -4.77 Total: -122.53 kcal
Atomic # 8 Polarization: -33.74 SS G_CDS: -0.06 Total: -33.80 kcal
Atomic # 14 Polarization: 52.04 SS G_CDS: 2.03 Total: 54.07 kcal
Total: -89.95 3.45 -86.50 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084796716.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.563 kcal
(2) G-P(sol) polarization free energy of solvation -89.948 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.615 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.495 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.068 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds