Wall clock time and date at job start Tue Mar 31 2020 11:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47390 * 2 1 4 4 C 1.38360 * 119.85375 * 90.00072 * 3 2 1 5 5 C 1.37955 * 120.14412 * 180.02562 * 4 3 2 6 6 C 1.39570 * 119.85315 * 359.97438 * 5 4 3 7 7 C 1.47852 * 120.14536 * 179.97438 * 6 5 4 8 8 O 1.21546 * 120.00140 * 186.78134 * 7 6 5 9 9 N 1.34776 * 119.99767 * 6.78398 * 7 6 5 10 10 C 1.47806 * 135.01173 * 5.48086 * 9 7 6 11 11 C 1.54659 * 85.79352 * 153.82742 * 10 9 7 12 12 H 1.09000 * 114.43919 * 140.42171 * 11 10 9 13 13 C 1.53008 * 110.83539 * 270.23259 * 11 10 9 14 14 C 1.53107 * 109.44661 * 143.88529 * 13 11 10 15 15 N 1.46618 * 108.00729 * 301.02400 * 14 13 11 16 16 C 1.36939 * 119.89133 * 237.30155 * 15 14 13 17 17 H 1.07997 * 119.99774 * 25.31555 * 16 15 14 18 18 C 1.38813 * 120.00056 * 205.31723 * 16 15 14 19 19 N 1.31610 * 119.99957 * 15.95158 * 18 16 15 20 20 Si 1.86804 * 119.99764 * 196.22626 * 18 16 15 21 21 H 1.48499 * 109.47040 * 269.72742 * 20 18 16 22 22 H 1.48504 * 109.46938 * 29.72265 * 20 18 16 23 23 H 1.48497 * 109.47209 * 149.72294 * 20 18 16 24 24 C 1.45677 * 120.22164 * 57.58177 * 15 14 13 25 25 C 1.46819 * 135.01180 * 185.51197 * 9 7 6 26 26 H 1.09000 * 111.56046 * 94.46071 * 25 9 7 27 27 C 1.39579 * 119.71517 * 0.25141 * 6 5 4 28 28 C 1.37963 * 119.84854 * 359.51344 * 27 6 5 29 29 H 1.08997 * 109.47298 * 59.99431 * 1 2 3 30 30 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46390 * 299.99873 * 1 2 3 32 32 H 1.09001 * 109.46390 * 240.00126 * 2 1 3 33 33 H 1.08997 * 109.47298 * 120.00569 * 2 1 3 34 34 H 1.07999 * 119.92657 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.07028 * 179.97438 * 5 4 3 36 36 H 1.09003 * 113.82056 * 39.61287 * 10 9 7 37 37 H 1.08993 * 113.93382 * 268.06120 * 10 9 7 38 38 H 1.08994 * 109.47940 * 23.89631 * 13 11 10 39 39 H 1.08998 * 109.47918 * 263.87630 * 13 11 10 40 40 H 1.08997 * 109.75465 * 181.39440 * 14 13 11 41 41 H 1.09005 * 109.79563 * 60.67269 * 14 13 11 42 42 H 0.96999 * 119.99905 * 180.02562 * 19 18 16 43 43 H 1.09000 * 108.71369 * 81.48042 * 24 15 14 44 44 H 1.08991 * 108.72203 * 199.50684 * 24 15 14 45 45 H 1.07997 * 120.07599 * 179.73294 * 27 6 5 46 46 H 1.07995 * 119.92765 * 180.23279 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2621 2.0701 1.2000 5 6 2.7215 3.3709 1.2070 6 6 2.9551 4.0317 0.0000 7 6 3.4470 5.4260 0.0000 8 8 3.5323 6.0403 -1.0453 9 7 3.8007 6.0158 1.1591 10 6 3.9266 5.5704 2.5628 11 6 4.9622 6.7094 2.7118 12 1 4.9053 7.2498 3.6567 13 6 6.3703 6.2116 2.3795 14 6 7.1494 7.3223 1.6700 15 7 6.4171 7.6829 0.4521 16 6 7.0369 7.6014 -0.7663 17 1 7.8646 6.9221 -0.9067 18 6 6.6012 8.3920 -1.8209 19 7 5.8230 9.4277 -1.5891 20 14 7.1133 7.9812 -3.5697 21 1 8.3776 8.6893 -3.8945 22 1 7.3208 6.5159 -3.6935 23 1 6.0488 8.4117 -4.5113 24 6 5.0341 8.1333 0.5343 25 6 4.2201 7.3672 1.5508 26 1 3.3766 7.9632 1.8992 27 6 2.7170 3.3725 -1.2070 28 6 2.2622 2.0700 -1.2000 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0805 1.5578 2.1332 35 1 2.8999 3.8768 2.1444 36 1 4.3512 4.5724 2.6716 37 1 3.0236 5.7161 3.1556 38 1 6.3035 5.3410 1.7271 39 1 6.8855 5.9373 3.3000 40 1 8.1454 6.9647 1.4088 41 1 7.2297 8.1917 2.3226 42 1 5.5183 9.9799 -2.3261 43 1 5.0258 9.1905 0.7994 44 1 4.5696 8.0173 -0.4448 45 1 2.8917 3.8797 -2.1444 46 1 2.0811 1.5575 -2.1332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084808492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:34 Heat of formation + Delta-G solvation = 55.640594 kcal Electronic energy + Delta-G solvation = -26902.988725 eV Core-core repulsion = 23373.511902 eV Total energy + Delta-G solvation = -3529.476822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60589 -39.26051 -37.33633 -35.19607 -34.15988 -32.14410 -31.05224 -30.16689 -30.02746 -28.37252 -26.97660 -24.55087 -23.96554 -23.11122 -22.35034 -21.59281 -20.80589 -19.83195 -18.00046 -17.26611 -16.21620 -15.93695 -15.70487 -15.54693 -14.91969 -14.43607 -14.25764 -13.87089 -13.82259 -13.67065 -13.46780 -13.35569 -13.19605 -13.08688 -12.56844 -12.42130 -12.27519 -11.92184 -11.82263 -11.45738 -11.43525 -11.21503 -11.05963 -10.88912 -10.60374 -10.56090 -10.44198 -10.15210 -9.85460 -9.75686 -9.57884 -8.96601 -8.91242 -8.68940 -8.25548 -8.06497 -6.55051 -5.61686 -3.02405 0.98219 1.39624 3.22345 3.27077 3.50155 3.58034 3.60964 4.07382 4.51121 4.61709 4.65624 4.72783 4.76101 4.97036 4.99695 5.11419 5.21045 5.31794 5.35700 5.41931 5.44081 5.49876 5.55756 5.63095 5.63685 5.70261 5.77046 5.83072 5.90737 5.94948 6.01263 6.14487 6.15941 6.31125 6.36130 6.41161 6.49069 6.51852 6.57707 6.65053 6.81689 6.93164 7.03323 7.53797 7.80762 7.98417 8.31655 8.61595 8.80127 9.39833 10.04377 10.52458 11.46858 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.004362 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.245436 B = 6416.979135 C = 7633.632879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.069 4.069 4 C -0.130 4.130 5 C -0.098 4.098 6 C -0.121 4.121 7 C 0.572 3.428 8 O -0.511 6.511 9 N -0.624 5.624 10 C 0.088 3.912 11 C -0.109 4.109 12 H 0.087 0.913 13 C -0.117 4.117 14 C 0.147 3.853 15 N -0.584 5.584 16 C -0.252 4.252 17 H 0.062 0.938 18 C 0.012 3.988 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.290 1.290 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.167 3.833 25 C 0.125 3.875 26 H 0.073 0.927 27 C -0.060 4.060 28 C -0.127 4.127 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.252 0.748 43 H 0.031 0.969 44 H 0.103 0.897 45 H 0.135 0.865 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -15.995 10.507 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.069 4.069 4 C -0.148 4.148 5 C -0.116 4.116 6 C -0.124 4.124 7 C 0.362 3.638 8 O -0.387 6.387 9 N -0.361 5.361 10 C -0.036 4.036 11 C -0.128 4.128 12 H 0.105 0.895 13 C -0.157 4.157 14 C 0.021 3.979 15 N -0.306 5.306 16 C -0.382 4.382 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.217 1.217 22 H -0.207 1.207 23 H -0.216 1.216 24 C 0.040 3.960 25 C 0.021 3.979 26 H 0.091 0.909 27 C -0.079 4.079 28 C -0.145 4.145 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.121 0.879 45 H 0.153 0.847 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.389 -15.620 9.592 20.595 hybrid contribution 0.041 -0.244 -0.854 0.889 sum -9.348 -15.864 8.738 20.381 Atomic orbital electron populations 1.21748 0.94639 1.01636 1.02375 1.20577 0.96226 0.92635 1.02922 1.20054 0.97523 0.96057 0.93270 1.20928 1.01444 0.94874 0.97506 1.21813 0.96996 0.94735 0.98078 1.20153 1.03235 0.94832 0.94191 1.17786 0.77702 0.85725 0.82628 1.90853 1.52755 1.65068 1.30024 1.49659 1.67000 1.13762 1.05630 1.23706 0.98264 0.99370 0.82221 1.22880 0.95485 0.96215 0.98214 0.89496 1.21863 0.93883 1.00452 0.99477 1.20743 0.94351 0.93929 0.88917 1.43467 1.07368 1.78195 1.01612 1.19054 1.14921 1.16846 0.87340 0.92057 1.24901 0.99887 0.95360 0.98546 1.70007 1.38513 1.15955 1.30280 0.86319 0.77244 0.77996 0.85298 1.21733 1.20686 1.21589 1.20174 0.84044 0.93276 0.98466 1.22755 0.95940 0.84744 0.94425 0.90926 1.21330 0.94631 0.93849 0.98095 1.20981 1.01188 0.94711 0.97657 0.92448 0.92421 0.92519 0.90932 0.90975 0.85920 0.84651 0.90201 0.90287 0.92082 0.92728 0.92583 0.96225 0.93837 0.95074 0.87857 0.84674 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.90 37.16 0.37 -0.70 16 2 C -0.09 -0.70 6.06 -27.88 -0.17 -0.86 16 3 C -0.07 -0.76 5.14 -104.53 -0.54 -1.30 16 4 C -0.13 -1.45 9.68 -39.64 -0.38 -1.83 16 5 C -0.10 -1.30 9.11 -39.19 -0.36 -1.66 16 6 C -0.12 -2.04 5.87 -104.97 -0.62 -2.65 16 7 C 0.57 11.95 7.94 -12.33 -0.10 11.85 16 8 O -0.51 -13.22 15.42 5.33 0.08 -13.14 16 9 N -0.62 -11.59 3.33 -174.89 -0.58 -12.17 16 10 C 0.09 1.16 5.59 -3.00 -0.02 1.14 16 11 C -0.11 -1.66 4.39 -89.96 -0.40 -2.06 16 12 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.12 -1.97 5.66 -26.67 -0.15 -2.12 16 14 C 0.15 3.09 6.47 -3.92 -0.03 3.06 16 15 N -0.58 -15.19 3.02 -174.88 -0.53 -15.72 16 16 C -0.25 -7.36 9.53 -15.06 -0.14 -7.50 16 17 H 0.06 1.77 7.85 -52.49 -0.41 1.36 16 18 C 0.01 0.35 4.91 -17.43 -0.09 0.26 16 19 N -0.90 -27.82 11.03 55.49 0.61 -27.20 16 20 Si 0.90 23.78 29.58 -169.99 -5.03 18.75 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 24 C 0.17 4.20 4.61 -5.45 -0.03 4.18 16 25 C 0.12 2.42 4.24 -69.43 -0.29 2.13 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 C -0.06 -0.95 9.59 -39.18 -0.38 -1.33 16 28 C -0.13 -1.59 9.68 -39.64 -0.38 -1.97 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.14 1.56 4.13 -52.49 -0.22 1.35 16 36 H 0.08 0.95 6.65 -51.93 -0.35 0.61 16 37 H 0.08 0.83 8.11 -51.93 -0.42 0.40 16 38 H 0.06 1.15 7.69 -51.93 -0.40 0.75 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.16 7.88 -51.93 -0.41 0.75 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 44 H 0.10 3.07 4.88 -51.93 -0.25 2.82 16 45 H 0.14 2.27 7.67 -52.49 -0.40 1.87 16 46 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -35.03 362.50 -10.72 -45.75 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.05 Total: -0.38 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.69 Total: -1.36 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.50 Total: -55.09 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.03 Total: 18.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.03 -10.72 -45.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084808492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.392 kcal (2) G-P(sol) polarization free energy of solvation -35.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds