Wall clock time and date at job start Tue Mar 31 2020 11:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47390 * 2 1 4 4 C 1.38360 * 119.85375 * 90.00072 * 3 2 1 5 5 C 1.37955 * 120.14412 * 180.02562 * 4 3 2 6 6 C 1.39570 * 119.85315 * 359.97438 * 5 4 3 7 7 C 1.47852 * 120.14536 * 179.97438 * 6 5 4 8 8 O 1.21546 * 120.00140 * 186.78134 * 7 6 5 9 9 N 1.34776 * 119.99767 * 6.78398 * 7 6 5 10 10 C 1.47806 * 135.01173 * 5.48086 * 9 7 6 11 11 C 1.54659 * 85.79352 * 153.82742 * 10 9 7 12 12 H 1.09000 * 114.43919 * 140.42171 * 11 10 9 13 13 C 1.53008 * 110.83539 * 270.23259 * 11 10 9 14 14 C 1.53107 * 109.44661 * 143.88529 * 13 11 10 15 15 N 1.46618 * 108.00729 * 301.02400 * 14 13 11 16 16 C 1.36939 * 119.89133 * 237.30155 * 15 14 13 17 17 H 1.07997 * 119.99774 * 25.31555 * 16 15 14 18 18 C 1.38813 * 120.00056 * 205.31723 * 16 15 14 19 19 N 1.31610 * 119.99957 * 15.95158 * 18 16 15 20 20 Si 1.86804 * 119.99764 * 196.22626 * 18 16 15 21 21 H 1.48499 * 109.47040 * 269.72742 * 20 18 16 22 22 H 1.48504 * 109.46938 * 29.72265 * 20 18 16 23 23 H 1.48497 * 109.47209 * 149.72294 * 20 18 16 24 24 C 1.45677 * 120.22164 * 57.58177 * 15 14 13 25 25 C 1.46819 * 135.01180 * 185.51197 * 9 7 6 26 26 H 1.09000 * 111.56046 * 94.46071 * 25 9 7 27 27 C 1.39579 * 119.71517 * 0.25141 * 6 5 4 28 28 C 1.37963 * 119.84854 * 359.51344 * 27 6 5 29 29 H 1.08997 * 109.47298 * 59.99431 * 1 2 3 30 30 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46390 * 299.99873 * 1 2 3 32 32 H 1.09001 * 109.46390 * 240.00126 * 2 1 3 33 33 H 1.08997 * 109.47298 * 120.00569 * 2 1 3 34 34 H 1.07999 * 119.92657 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.07028 * 179.97438 * 5 4 3 36 36 H 1.09003 * 113.82056 * 39.61287 * 10 9 7 37 37 H 1.08993 * 113.93382 * 268.06120 * 10 9 7 38 38 H 1.08994 * 109.47940 * 23.89631 * 13 11 10 39 39 H 1.08998 * 109.47918 * 263.87630 * 13 11 10 40 40 H 1.08997 * 109.75465 * 181.39440 * 14 13 11 41 41 H 1.09005 * 109.79563 * 60.67269 * 14 13 11 42 42 H 0.96999 * 119.99905 * 180.02562 * 19 18 16 43 43 H 1.09000 * 108.71369 * 81.48042 * 24 15 14 44 44 H 1.08991 * 108.72203 * 199.50684 * 24 15 14 45 45 H 1.07997 * 120.07599 * 179.73294 * 27 6 5 46 46 H 1.07995 * 119.92765 * 180.23279 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2621 2.0701 1.2000 5 6 2.7215 3.3709 1.2070 6 6 2.9551 4.0317 0.0000 7 6 3.4470 5.4260 0.0000 8 8 3.5323 6.0403 -1.0453 9 7 3.8007 6.0158 1.1591 10 6 3.9266 5.5704 2.5628 11 6 4.9622 6.7094 2.7118 12 1 4.9053 7.2498 3.6567 13 6 6.3703 6.2116 2.3795 14 6 7.1494 7.3223 1.6700 15 7 6.4171 7.6829 0.4521 16 6 7.0369 7.6014 -0.7663 17 1 7.8646 6.9221 -0.9067 18 6 6.6012 8.3920 -1.8209 19 7 5.8230 9.4277 -1.5891 20 14 7.1133 7.9812 -3.5697 21 1 8.3776 8.6893 -3.8945 22 1 7.3208 6.5159 -3.6935 23 1 6.0488 8.4117 -4.5113 24 6 5.0341 8.1333 0.5343 25 6 4.2201 7.3672 1.5508 26 1 3.3766 7.9632 1.8992 27 6 2.7170 3.3725 -1.2070 28 6 2.2622 2.0700 -1.2000 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0805 1.5578 2.1332 35 1 2.8999 3.8768 2.1444 36 1 4.3512 4.5724 2.6716 37 1 3.0236 5.7161 3.1556 38 1 6.3035 5.3410 1.7271 39 1 6.8855 5.9373 3.3000 40 1 8.1454 6.9647 1.4088 41 1 7.2297 8.1917 2.3226 42 1 5.5183 9.9799 -2.3261 43 1 5.0258 9.1905 0.7994 44 1 4.5696 8.0173 -0.4448 45 1 2.8917 3.8797 -2.1444 46 1 2.0811 1.5575 -2.1332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084808492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:33 Heat of formation + Delta-G solvation = 33.383091 kcal Electronic energy + Delta-G solvation = -26903.953882 eV Core-core repulsion = 23373.511902 eV Total energy + Delta-G solvation = -3530.441980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.98734 -40.36480 -38.83674 -37.07175 -35.03933 -34.00434 -32.16449 -31.93167 -31.21821 -29.70367 -28.63291 -25.85879 -25.50199 -24.47543 -23.51999 -22.81742 -22.13938 -21.11358 -19.65181 -18.83756 -17.78641 -17.34242 -17.30607 -16.52758 -16.33339 -15.95007 -15.74853 -15.43868 -15.19846 -14.84580 -14.73087 -14.59478 -14.43988 -14.18026 -14.02978 -13.91397 -13.53595 -13.33020 -13.17644 -12.82095 -12.70514 -12.65016 -12.46406 -12.27399 -12.12931 -12.02788 -11.95151 -11.76556 -11.66540 -11.48688 -11.11246 -10.68756 -10.35123 -9.96923 -9.79356 -9.45919 -8.68924 -7.87757 -5.29972 -0.11466 0.39698 1.31528 1.38605 1.44555 1.91307 1.95093 2.46076 2.88447 3.27734 3.42572 3.44977 3.71775 3.80201 3.86602 3.97124 4.00204 4.20401 4.27856 4.39102 4.44247 4.48020 4.51640 4.55179 4.57744 4.65528 4.67779 4.73570 4.78780 4.90511 4.99048 5.02313 5.06309 5.10588 5.11922 5.14462 5.30908 5.33466 5.37917 5.42564 5.49910 5.54700 5.61444 5.71321 5.80820 5.95897 6.37880 6.89434 7.17399 7.29939 7.94954 8.33751 9.16812 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.004362 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.245436 B = 6416.979135 C = 7633.632879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.058 4.058 4 C -0.121 4.121 5 C -0.090 4.090 6 C -0.151 4.151 7 C 0.558 3.442 8 O -0.589 6.589 9 N -0.631 5.631 10 C 0.101 3.899 11 C -0.097 4.097 12 H 0.132 0.868 13 C -0.106 4.106 14 C 0.137 3.863 15 N -0.602 5.602 16 C -0.257 4.257 17 H 0.058 0.942 18 C -0.045 4.045 19 N -0.931 5.931 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.299 1.299 24 C 0.180 3.820 25 C 0.108 3.892 26 H 0.092 0.908 27 C -0.087 4.087 28 C -0.129 4.129 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.038 0.962 39 H 0.103 0.897 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.244 0.756 43 H -0.003 1.003 44 H 0.049 0.951 45 H 0.102 0.898 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 -19.834 14.696 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.058 4.058 4 C -0.138 4.138 5 C -0.108 4.108 6 C -0.154 4.154 7 C 0.350 3.650 8 O -0.470 6.470 9 N -0.365 5.365 10 C -0.019 4.019 11 C -0.116 4.116 12 H 0.149 0.851 13 C -0.145 4.145 14 C 0.013 3.987 15 N -0.326 5.326 16 C -0.388 4.388 17 H 0.076 0.924 18 C -0.240 4.240 19 N -0.578 5.578 20 Si 0.784 3.216 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.226 1.226 24 C 0.054 3.946 25 C 0.004 3.996 26 H 0.110 0.890 27 C -0.106 4.106 28 C -0.147 4.147 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.182 0.818 35 H 0.175 0.825 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.056 0.944 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.014 0.986 44 H 0.067 0.933 45 H 0.120 0.880 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.120 -19.494 13.870 25.977 hybrid contribution 0.283 0.886 -2.105 2.301 sum -9.836 -18.608 11.765 24.113 Atomic orbital electron populations 1.21748 0.93937 1.02681 1.01970 1.20669 0.96629 0.90422 1.04418 1.20505 0.95348 0.97461 0.92526 1.21392 0.99441 0.93864 0.99134 1.22004 0.96200 0.95511 0.97084 1.19978 1.06165 0.93135 0.96163 1.18592 0.76914 0.87195 0.82329 1.90803 1.56226 1.67136 1.32838 1.49851 1.65586 1.13617 1.07420 1.24024 0.99452 0.99717 0.78714 1.22891 0.94487 0.96561 0.97636 0.85050 1.21743 0.94810 0.97506 1.00442 1.21008 0.94490 0.95798 0.87449 1.43715 1.08153 1.78295 1.02391 1.19348 1.14468 1.15789 0.89181 0.92404 1.25598 1.00809 0.95760 1.01849 1.70168 1.40102 1.17030 1.30463 0.85465 0.77173 0.77631 0.81376 1.19836 1.20748 1.22581 1.19766 0.84426 0.92708 0.97742 1.22744 0.96723 0.85492 0.94621 0.89011 1.21269 0.96875 0.95531 0.96971 1.21177 1.00587 0.93275 0.99614 0.93503 0.90706 0.92353 0.90218 0.88818 0.81779 0.82452 0.87843 0.85751 0.94353 0.87861 0.93135 0.95200 0.94699 0.98564 0.93266 0.87957 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.90 71.98 0.71 -0.85 16 2 C -0.08 -0.99 6.06 29.85 0.18 -0.81 16 3 C -0.06 -1.09 5.14 -19.81 -0.10 -1.19 16 4 C -0.12 -2.13 9.68 22.23 0.22 -1.92 16 5 C -0.09 -2.10 9.11 22.52 0.21 -1.90 16 6 C -0.15 -5.18 5.87 -20.09 -0.12 -5.29 16 7 C 0.56 24.51 7.94 86.79 0.69 25.20 16 8 O -0.59 -33.57 15.42 -3.86 -0.06 -33.63 16 9 N -0.63 -23.09 3.33 -825.52 -2.75 -25.83 16 10 C 0.10 2.20 5.59 86.34 0.48 2.68 16 11 C -0.10 -2.57 4.39 -10.31 -0.05 -2.62 16 12 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 13 C -0.11 -3.23 5.66 30.63 0.17 -3.06 16 14 C 0.14 5.69 6.47 86.39 0.56 6.24 16 15 N -0.60 -32.60 3.02 -707.21 -2.13 -34.73 16 16 C -0.26 -15.79 9.53 84.03 0.80 -14.99 16 17 H 0.06 3.49 7.85 -2.91 -0.02 3.47 16 18 C -0.04 -2.83 4.91 84.86 0.42 -2.42 16 19 N -0.93 -61.45 11.03 21.65 0.24 -61.21 16 20 Si 0.95 51.74 29.58 68.60 2.03 53.77 16 21 H -0.27 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.28 -15.09 7.11 99.48 0.71 -14.39 16 23 H -0.30 -16.51 7.11 99.48 0.71 -15.80 16 24 C 0.18 9.63 4.61 85.91 0.40 10.02 16 25 C 0.11 4.17 4.24 43.85 0.19 4.36 16 26 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 27 C -0.09 -2.92 9.59 22.53 0.22 -2.71 16 28 C -0.13 -3.12 9.68 22.23 0.22 -2.91 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 33 H 0.09 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.16 2.82 4.13 -2.91 -0.01 2.81 16 36 H 0.10 1.84 6.65 -2.39 -0.02 1.83 16 37 H 0.12 1.72 8.11 -2.39 -0.02 1.70 16 38 H 0.04 1.35 7.69 -2.39 -0.02 1.33 16 39 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 2.09 7.88 -2.39 -0.02 2.07 16 41 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.24 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.00 -0.20 7.97 -2.39 -0.02 -0.22 16 44 H 0.05 3.18 4.88 -2.39 -0.01 3.17 16 45 H 0.10 3.96 7.67 -2.91 -0.02 3.93 16 46 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -88.79 362.50 3.48 -85.31 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.97 Total: 8.46 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.18 Total: 7.86 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -4.64 Total: -121.77 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.06 Total: -33.63 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.03 Total: 53.77 kcal Total: -88.79 3.48 -85.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084808492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.696 kcal (2) G-P(sol) polarization free energy of solvation -88.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds