Wall clock time and date at job start Tue Mar 31 2020 10:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38383 * 119.84848 * 2 1 4 4 C 1.37947 * 120.14207 * 179.76165 * 3 2 1 5 5 C 1.39600 * 119.84799 * 0.49484 * 4 3 2 6 6 C 1.47850 * 120.13861 * 179.78566 * 5 4 3 7 7 O 1.21546 * 119.99941 * 222.41145 * 6 5 4 8 8 N 1.34775 * 119.99765 * 42.40831 * 6 5 4 9 9 C 1.47808 * 135.01663 * 354.81783 * 8 6 5 10 10 C 1.54647 * 85.79348 * 153.83857 * 9 8 6 11 11 H 1.09006 * 114.44309 * 140.42537 * 10 9 8 12 12 C 1.53008 * 110.83630 * 270.22727 * 10 9 8 13 13 C 1.53103 * 109.45170 * 143.88846 * 12 10 9 14 14 N 1.46621 * 108.04781 * 301.00418 * 13 12 10 15 15 C 1.36939 * 119.89197 * 237.35023 * 14 13 12 16 16 H 1.07997 * 119.99681 * 30.29685 * 15 14 13 17 17 C 1.38811 * 120.00281 * 210.30608 * 15 14 13 18 18 N 1.31613 * 119.99825 * 11.28754 * 17 15 14 19 19 Si 1.86801 * 119.99970 * 191.29614 * 17 15 14 20 20 H 1.48501 * 109.47074 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47026 * 119.99672 * 19 17 15 22 22 H 1.48499 * 109.47120 * 239.99566 * 19 17 15 23 23 C 1.45413 * 119.51176 * 58.77244 * 14 13 12 24 24 C 1.48763 * 135.02544 * 174.75964 * 8 6 5 25 25 H 1.09000 * 111.44881 * 94.74971 * 24 8 6 26 26 C 1.39547 * 119.71412 * 359.50625 * 5 4 3 27 27 C 1.50704 * 120.07432 * 180.22944 * 26 5 4 28 28 C 1.37977 * 119.85313 * 0.25982 * 26 5 4 29 29 H 1.09003 * 109.46935 * 269.97524 * 1 2 3 30 30 H 1.09000 * 109.47533 * 29.97910 * 1 2 3 31 31 H 1.09006 * 109.46749 * 149.97939 * 1 2 3 32 32 H 1.08001 * 119.93188 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.07062 * 180.27438 * 4 3 2 34 34 H 1.08990 * 113.82241 * 39.61623 * 9 8 6 35 35 H 1.09003 * 113.81729 * 268.05258 * 9 8 6 36 36 H 1.09000 * 109.47660 * 23.89545 * 12 10 9 37 37 H 1.08998 * 109.48468 * 263.88093 * 12 10 9 38 38 H 1.09004 * 109.75578 * 60.64943 * 13 12 10 39 39 H 1.08994 * 109.75848 * 181.34966 * 13 12 10 40 40 H 0.97010 * 120.00107 * 180.02562 * 18 17 15 41 41 H 1.09001 * 107.69460 * 198.54649 * 23 14 13 42 42 H 1.08994 * 109.84935 * 80.34854 * 23 14 13 43 43 H 1.09001 * 109.46568 * 88.79605 * 27 26 5 44 44 H 1.08995 * 109.47294 * 208.79720 * 27 26 5 45 45 H 1.09000 * 109.46936 * 328.80351 * 27 26 5 46 46 H 1.07999 * 119.92701 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2003 0.0000 4 6 3.5752 1.2073 0.0050 5 6 4.2762 0.0001 -0.0005 6 6 5.7547 0.0002 0.0000 7 8 6.3627 -0.7736 -0.7134 8 7 6.4282 0.8584 0.7915 9 6 6.0493 1.9705 1.6884 10 6 7.3587 1.6534 2.4477 11 1 7.9047 2.5320 2.7916 12 6 7.1125 0.6205 3.5493 13 6 8.3259 -0.3068 3.6591 14 7 8.5182 -0.9591 2.3602 15 6 8.5165 -2.3259 2.2760 16 1 7.9267 -2.9087 2.9679 17 6 9.2729 -2.9622 1.3014 18 7 10.1580 -2.2802 0.6059 19 14 9.0343 -4.7862 0.9769 20 1 7.9874 -5.3180 1.8859 21 1 8.6148 -4.9874 -0.4334 22 1 10.3116 -5.5035 1.2204 23 6 8.7403 -0.1451 1.1758 24 6 7.8610 1.0786 1.1255 25 1 8.3035 1.8494 0.4944 26 6 3.5755 -1.2067 -0.0004 27 6 4.3240 -2.5146 -0.0011 28 6 2.1957 -1.1997 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6522 2.1335 0.0004 33 1 4.1115 2.1447 0.0094 34 1 5.1467 1.7800 2.2687 35 1 6.0473 2.9464 1.2028 36 1 6.2273 0.0332 3.3056 37 1 6.9590 1.1320 4.4995 38 1 9.2120 0.2746 3.9141 39 1 8.1460 -1.0597 4.4264 40 1 10.6864 -2.7248 -0.0755 41 1 8.5284 -0.7641 0.3040 42 1 9.7825 0.1712 1.1343 43 1 4.5236 -2.8194 1.0263 44 1 3.7227 -3.2772 -0.4960 45 1 5.2672 -2.3932 -0.5337 46 1 1.6522 -2.1329 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084808494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:03 Heat of formation + Delta-G solvation = 48.306183 kcal Electronic energy + Delta-G solvation = -27487.322249 eV Core-core repulsion = 23957.527383 eV Total energy + Delta-G solvation = -3529.794866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47908 -39.29727 -37.30023 -35.16151 -33.25253 -32.36654 -31.85486 -30.15098 -29.16267 -27.28068 -27.04780 -26.44117 -23.89807 -23.00833 -22.39308 -21.15165 -20.88748 -19.58607 -17.91865 -17.23827 -16.13330 -15.88777 -15.59906 -15.16238 -14.90793 -14.38828 -14.23603 -13.97858 -13.66831 -13.47155 -13.19046 -13.11373 -13.04164 -12.82871 -12.70464 -12.41134 -12.22413 -11.94397 -11.75820 -11.50069 -11.43312 -11.31551 -11.05291 -10.93590 -10.69675 -10.58159 -10.45079 -10.15661 -9.84810 -9.81532 -9.57548 -8.87809 -8.74632 -8.46009 -8.33516 -8.05545 -6.54191 -5.66164 -3.12865 1.10207 1.42561 3.21199 3.26973 3.46224 3.53094 3.54883 3.90961 4.59265 4.67577 4.73601 4.80209 4.83650 4.95181 5.19176 5.27982 5.34416 5.42384 5.43899 5.50512 5.55369 5.60211 5.62644 5.63332 5.74551 5.84131 5.88932 5.96421 6.01473 6.12959 6.15959 6.21545 6.31557 6.36498 6.41761 6.51001 6.54364 6.59652 6.64313 6.81980 6.83832 7.02273 7.03512 7.48826 7.77310 7.92947 8.33005 8.59407 8.78820 9.36259 9.98239 10.50489 11.41803 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.005345 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.194849 B = 5237.236621 C = 6480.955798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.083 4.083 5 C -0.123 4.123 6 C 0.581 3.419 7 O -0.516 6.516 8 N -0.627 5.627 9 C 0.095 3.905 10 C -0.109 4.109 11 H 0.085 0.915 12 C -0.116 4.116 13 C 0.144 3.856 14 N -0.582 5.582 15 C -0.253 4.253 16 H 0.062 0.938 17 C 0.013 3.987 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.291 1.291 23 C 0.168 3.832 24 C 0.127 3.873 25 H 0.074 0.926 26 C -0.021 4.021 27 C -0.142 4.142 28 C -0.131 4.131 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.252 0.748 41 H 0.098 0.902 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.860 10.339 1.754 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.072 4.072 3 C -0.156 4.156 4 C -0.102 4.102 5 C -0.126 4.126 6 C 0.370 3.630 7 O -0.392 6.392 8 N -0.363 5.363 9 C -0.028 4.028 10 C -0.128 4.128 11 H 0.103 0.897 12 C -0.156 4.156 13 C 0.017 3.983 14 N -0.304 5.304 15 C -0.382 4.382 16 H 0.080 0.920 17 C -0.186 4.186 18 N -0.546 5.546 19 Si 0.729 3.271 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.218 1.218 23 C 0.041 3.959 24 C 0.024 3.976 25 H 0.092 0.908 26 C -0.022 4.022 27 C -0.198 4.198 28 C -0.149 4.149 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.124 0.876 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.525 9.689 1.082 18.332 hybrid contribution -0.204 -0.706 -0.306 0.796 sum -15.729 8.983 0.777 18.130 Atomic orbital electron populations 1.20807 0.91225 1.02715 1.02317 1.20006 0.95968 0.93135 0.98046 1.20859 0.93774 0.97457 1.03528 1.21225 0.94174 0.96919 0.97835 1.19922 0.93497 0.93794 1.05409 1.17743 0.86003 0.80328 0.78937 1.90757 1.69175 1.39259 1.40009 1.50295 1.09754 1.31940 1.44301 1.23556 0.98969 0.89920 0.90390 1.22832 0.95573 0.98652 0.95741 0.89659 1.21848 1.01265 0.96902 0.95541 1.20787 0.93531 0.94233 0.89705 1.43403 1.84230 1.02327 1.00447 1.19078 1.21471 0.81404 1.16255 0.92021 1.25060 0.95848 0.97578 1.00116 1.69980 1.24077 1.35094 1.25498 0.86275 0.77237 0.85536 0.78037 1.20369 1.21420 1.21812 1.19976 0.93595 0.89460 0.92820 1.23090 0.82681 0.99601 0.92221 0.90838 1.20008 0.93245 0.94940 0.94035 1.21208 1.02518 0.92447 1.03599 1.20876 0.93176 0.97673 1.03187 0.91094 0.91568 0.91520 0.85974 0.85911 0.90616 0.90564 0.92106 0.92806 0.96264 0.92600 0.93775 0.88348 0.94799 0.90743 0.91976 0.87596 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.07 -0.83 5.89 -104.53 -0.62 -1.45 16 3 C -0.14 -1.61 9.68 -39.63 -0.38 -1.99 16 4 C -0.08 -1.14 8.82 -39.18 -0.35 -1.48 16 5 C -0.12 -2.12 5.68 -104.97 -0.60 -2.71 16 6 C 0.58 11.96 7.17 -12.33 -0.09 11.87 16 7 O -0.52 -12.88 13.81 5.33 0.07 -12.81 16 8 N -0.63 -11.57 3.39 -172.57 -0.59 -12.16 16 9 C 0.09 1.29 6.26 -2.57 -0.02 1.27 16 10 C -0.11 -1.67 4.34 -89.98 -0.39 -2.06 16 11 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 12 C -0.12 -1.95 5.66 -26.67 -0.15 -2.10 16 13 C 0.14 2.98 6.44 -3.92 -0.03 2.96 16 14 N -0.58 -14.79 2.99 -175.28 -0.52 -15.31 16 15 C -0.25 -7.16 9.50 -15.06 -0.14 -7.30 16 16 H 0.06 1.74 7.85 -52.49 -0.41 1.33 16 17 C 0.01 0.38 5.01 -17.43 -0.09 0.29 16 18 N -0.90 -27.26 11.08 55.49 0.61 -26.64 16 19 Si 0.90 23.00 29.57 -169.99 -5.03 17.97 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 23 C 0.17 4.16 4.68 -5.74 -0.03 4.13 16 24 C 0.13 2.44 4.29 -68.07 -0.29 2.15 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 C -0.02 -0.35 5.91 -104.23 -0.62 -0.97 16 27 C -0.14 -2.52 9.59 36.01 0.35 -2.17 16 28 C -0.13 -1.75 9.33 -39.64 -0.37 -2.12 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.47 6.99 -52.49 -0.37 1.11 16 34 H 0.08 0.96 7.81 -51.93 -0.41 0.56 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.10 2.88 5.28 -51.93 -0.27 2.61 16 42 H 0.03 0.90 7.97 -51.93 -0.41 0.49 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 45 H 0.11 2.29 5.29 -51.93 -0.27 2.01 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -33.59 362.88 -10.58 -44.17 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.16 Total: 1.57 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.44 Total: -2.26 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.49 Total: -54.11 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.81 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.59 -10.58 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084808494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.475 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds