Wall clock time and date at job start Tue Mar 31 2020 10:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38383 * 119.84848 * 2 1 4 4 C 1.37947 * 120.14207 * 179.76165 * 3 2 1 5 5 C 1.39600 * 119.84799 * 0.49484 * 4 3 2 6 6 C 1.47850 * 120.13861 * 179.78566 * 5 4 3 7 7 O 1.21546 * 119.99941 * 222.41145 * 6 5 4 8 8 N 1.34775 * 119.99765 * 42.40831 * 6 5 4 9 9 C 1.47808 * 135.01663 * 354.81783 * 8 6 5 10 10 C 1.54647 * 85.79348 * 153.83857 * 9 8 6 11 11 H 1.09006 * 114.44309 * 140.42537 * 10 9 8 12 12 C 1.53008 * 110.83630 * 270.22727 * 10 9 8 13 13 C 1.53103 * 109.45170 * 143.88846 * 12 10 9 14 14 N 1.46621 * 108.04781 * 301.00418 * 13 12 10 15 15 C 1.36939 * 119.89197 * 237.35023 * 14 13 12 16 16 H 1.07997 * 119.99681 * 30.29685 * 15 14 13 17 17 C 1.38811 * 120.00281 * 210.30608 * 15 14 13 18 18 N 1.31613 * 119.99825 * 11.28754 * 17 15 14 19 19 Si 1.86801 * 119.99970 * 191.29614 * 17 15 14 20 20 H 1.48501 * 109.47074 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47026 * 119.99672 * 19 17 15 22 22 H 1.48499 * 109.47120 * 239.99566 * 19 17 15 23 23 C 1.45413 * 119.51176 * 58.77244 * 14 13 12 24 24 C 1.48763 * 135.02544 * 174.75964 * 8 6 5 25 25 H 1.09000 * 111.44881 * 94.74971 * 24 8 6 26 26 C 1.39547 * 119.71412 * 359.50625 * 5 4 3 27 27 C 1.50704 * 120.07432 * 180.22944 * 26 5 4 28 28 C 1.37977 * 119.85313 * 0.25982 * 26 5 4 29 29 H 1.09003 * 109.46935 * 269.97524 * 1 2 3 30 30 H 1.09000 * 109.47533 * 29.97910 * 1 2 3 31 31 H 1.09006 * 109.46749 * 149.97939 * 1 2 3 32 32 H 1.08001 * 119.93188 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.07062 * 180.27438 * 4 3 2 34 34 H 1.08990 * 113.82241 * 39.61623 * 9 8 6 35 35 H 1.09003 * 113.81729 * 268.05258 * 9 8 6 36 36 H 1.09000 * 109.47660 * 23.89545 * 12 10 9 37 37 H 1.08998 * 109.48468 * 263.88093 * 12 10 9 38 38 H 1.09004 * 109.75578 * 60.64943 * 13 12 10 39 39 H 1.08994 * 109.75848 * 181.34966 * 13 12 10 40 40 H 0.97010 * 120.00107 * 180.02562 * 18 17 15 41 41 H 1.09001 * 107.69460 * 198.54649 * 23 14 13 42 42 H 1.08994 * 109.84935 * 80.34854 * 23 14 13 43 43 H 1.09001 * 109.46568 * 88.79605 * 27 26 5 44 44 H 1.08995 * 109.47294 * 208.79720 * 27 26 5 45 45 H 1.09000 * 109.46936 * 328.80351 * 27 26 5 46 46 H 1.07999 * 119.92701 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2003 0.0000 4 6 3.5752 1.2073 0.0050 5 6 4.2762 0.0001 -0.0005 6 6 5.7547 0.0002 0.0000 7 8 6.3627 -0.7736 -0.7134 8 7 6.4282 0.8584 0.7915 9 6 6.0493 1.9705 1.6884 10 6 7.3587 1.6534 2.4477 11 1 7.9047 2.5320 2.7916 12 6 7.1125 0.6205 3.5493 13 6 8.3259 -0.3068 3.6591 14 7 8.5182 -0.9591 2.3602 15 6 8.5165 -2.3259 2.2760 16 1 7.9267 -2.9087 2.9679 17 6 9.2729 -2.9622 1.3014 18 7 10.1580 -2.2802 0.6059 19 14 9.0343 -4.7862 0.9769 20 1 7.9874 -5.3180 1.8859 21 1 8.6148 -4.9874 -0.4334 22 1 10.3116 -5.5035 1.2204 23 6 8.7403 -0.1451 1.1758 24 6 7.8610 1.0786 1.1255 25 1 8.3035 1.8494 0.4944 26 6 3.5755 -1.2067 -0.0004 27 6 4.3240 -2.5146 -0.0011 28 6 2.1957 -1.1997 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6522 2.1335 0.0004 33 1 4.1115 2.1447 0.0094 34 1 5.1467 1.7800 2.2687 35 1 6.0473 2.9464 1.2028 36 1 6.2273 0.0332 3.3056 37 1 6.9590 1.1320 4.4995 38 1 9.2120 0.2746 3.9141 39 1 8.1460 -1.0597 4.4264 40 1 10.6864 -2.7248 -0.0755 41 1 8.5284 -0.7641 0.3040 42 1 9.7825 0.1712 1.1343 43 1 4.5236 -2.8194 1.0263 44 1 3.7227 -3.2772 -0.4960 45 1 5.2672 -2.3932 -0.5337 46 1 1.6522 -2.1329 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084808494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:02 Heat of formation + Delta-G solvation = 27.519389 kcal Electronic energy + Delta-G solvation = -27488.223632 eV Core-core repulsion = 23957.527383 eV Total energy + Delta-G solvation = -3530.696249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85519 -40.48043 -38.77056 -37.01952 -34.32061 -34.04670 -33.18187 -31.94912 -30.63949 -28.75360 -28.25324 -27.67662 -25.74270 -24.54071 -23.49843 -22.58491 -22.26464 -20.86949 -19.59219 -18.74800 -17.73322 -17.32187 -17.23231 -16.41870 -16.23269 -15.95638 -15.73467 -15.32102 -15.12818 -14.88366 -14.70876 -14.40364 -14.31446 -14.11825 -13.98955 -13.92541 -13.56109 -13.27610 -13.15278 -12.84082 -12.78692 -12.74273 -12.51657 -12.47143 -12.31023 -12.23789 -12.00392 -11.94631 -11.69155 -11.48684 -11.19534 -10.67141 -10.32258 -9.79803 -9.59964 -9.44218 -8.65105 -7.87655 -5.36459 0.00950 0.39492 1.33230 1.38587 1.45480 1.81502 1.97237 2.45384 2.77572 3.28414 3.46499 3.49727 3.72030 3.79133 3.87651 3.97155 3.99015 4.19063 4.33215 4.41631 4.42791 4.48548 4.54954 4.59100 4.64286 4.68189 4.72938 4.74409 4.76174 4.87420 4.89939 4.94330 5.00676 5.06157 5.11563 5.23964 5.28489 5.30951 5.34587 5.40434 5.55512 5.59306 5.61117 5.69515 5.76693 6.00298 6.38937 6.91927 7.17593 7.30930 7.92505 8.35106 9.16453 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.005345 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.194849 B = 5237.236621 C = 6480.955798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.079 4.079 5 C -0.152 4.152 6 C 0.568 3.432 7 O -0.583 6.583 8 N -0.633 5.633 9 C 0.110 3.890 10 C -0.097 4.097 11 H 0.128 0.872 12 C -0.105 4.105 13 C 0.136 3.864 14 N -0.599 5.599 15 C -0.256 4.256 16 H 0.058 0.942 17 C -0.042 4.042 18 N -0.932 5.932 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.301 1.301 22 H -0.282 1.282 23 C 0.184 3.816 24 C 0.111 3.889 25 H 0.092 0.908 26 C -0.050 4.050 27 C -0.134 4.134 28 C -0.133 4.133 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.037 0.963 37 H 0.099 0.901 38 H 0.028 0.972 39 H 0.050 0.950 40 H 0.245 0.755 41 H 0.043 0.957 42 H 0.001 0.999 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.882 13.618 3.478 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.155 4.155 6 C 0.359 3.641 7 O -0.464 6.464 8 N -0.368 5.368 9 C -0.011 4.011 10 C -0.116 4.116 11 H 0.146 0.854 12 C -0.144 4.144 13 C 0.011 3.989 14 N -0.323 5.323 15 C -0.386 4.386 16 H 0.076 0.924 17 C -0.238 4.238 18 N -0.578 5.578 19 Si 0.782 3.218 20 H -0.189 1.189 21 H -0.229 1.229 22 H -0.209 1.209 23 C 0.057 3.943 24 C 0.007 3.993 25 H 0.110 0.890 26 C -0.051 4.051 27 C -0.191 4.191 28 C -0.151 4.151 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.180 0.820 33 H 0.160 0.840 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.056 0.944 37 H 0.118 0.882 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.018 0.982 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.579 13.021 2.880 23.689 hybrid contribution 0.990 -1.691 -0.798 2.116 sum -18.589 11.330 2.081 21.869 Atomic orbital electron populations 1.20898 0.88201 1.04153 1.03635 1.20483 0.98054 0.92305 0.95443 1.21322 0.92892 0.99107 1.01234 1.21431 0.95233 0.96014 0.97029 1.19810 0.91349 0.95663 1.08639 1.18479 0.87692 0.79670 0.78256 1.90724 1.70856 1.41888 1.42922 1.50487 1.09422 1.32826 1.44027 1.23824 0.98476 0.89874 0.88896 1.22838 0.96645 0.99026 0.93107 0.85399 1.21721 0.97766 0.96416 0.98457 1.21015 0.95844 0.94863 0.87157 1.43629 1.84322 1.01715 1.02589 1.19336 1.20311 0.83334 1.15629 0.92431 1.25747 0.96248 1.01274 1.00544 1.70146 1.25291 1.36249 1.26135 0.85409 0.77656 0.81628 0.77110 1.18930 1.22873 1.20872 1.19552 0.93299 0.90685 0.90722 1.23045 0.82895 0.97274 0.96077 0.89016 1.20008 0.94717 0.93797 0.96566 1.21019 1.01177 0.94876 1.02012 1.21085 0.91684 0.99652 1.02710 0.89611 0.89581 0.90779 0.81978 0.83975 0.88887 0.86264 0.94375 0.88216 0.95379 0.93134 0.94602 0.93884 0.98157 0.92485 0.89741 0.92191 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.06 -1.20 5.89 -19.81 -0.12 -1.32 16 3 C -0.13 -2.37 9.68 22.24 0.22 -2.15 16 4 C -0.08 -1.91 8.82 22.53 0.20 -1.71 16 5 C -0.15 -5.22 5.68 -20.09 -0.11 -5.33 16 6 C 0.57 24.50 7.17 86.79 0.62 25.12 16 7 O -0.58 -32.00 13.81 -3.86 -0.05 -32.05 16 8 N -0.63 -23.22 3.39 -818.17 -2.78 -26.00 16 9 C 0.11 2.53 6.26 86.62 0.54 3.08 16 10 C -0.10 -2.65 4.34 -10.32 -0.04 -2.70 16 11 H 0.13 2.53 8.14 -2.38 -0.02 2.51 16 12 C -0.10 -3.24 5.66 30.63 0.17 -3.07 16 13 C 0.14 5.62 6.44 86.39 0.56 6.18 16 14 N -0.60 -31.91 2.99 -708.47 -2.12 -34.02 16 15 C -0.26 -15.31 9.50 84.03 0.80 -14.52 16 16 H 0.06 3.41 7.85 -2.91 -0.02 3.39 16 17 C -0.04 -2.62 5.01 84.86 0.43 -2.20 16 18 N -0.93 -60.45 11.08 21.65 0.24 -60.21 16 19 Si 0.95 50.16 29.57 68.60 2.03 52.19 16 20 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.30 -16.38 7.11 99.48 0.71 -15.67 16 22 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 23 C 0.18 9.70 4.68 85.86 0.40 10.10 16 24 C 0.11 4.26 4.29 43.65 0.19 4.45 16 25 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 26 C -0.05 -1.68 5.91 -19.61 -0.12 -1.80 16 27 C -0.13 -5.18 9.59 71.24 0.68 -4.50 16 28 C -0.13 -3.32 9.33 22.23 0.21 -3.12 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.68 8.08 -2.39 -0.02 0.66 16 31 H 0.07 0.76 8.08 -2.38 -0.02 0.74 16 32 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 2.80 6.99 -2.91 -0.02 2.78 16 34 H 0.09 1.90 7.81 -2.39 -0.02 1.88 16 35 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.36 7.69 -2.39 -0.02 1.34 16 37 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 2.09 7.90 -2.39 -0.02 2.07 16 40 H 0.24 15.52 8.31 -92.70 -0.77 14.75 16 41 H 0.04 2.74 5.28 -2.39 -0.01 2.73 16 42 H 0.00 0.04 7.97 -2.39 -0.02 0.02 16 43 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.08 2.68 8.08 -2.39 -0.02 2.66 16 45 H 0.06 2.90 5.29 -2.39 -0.01 2.88 16 46 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -85.14 362.88 3.62 -81.52 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.97 Total: 12.61 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.33 Total: 5.97 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -4.65 Total: -120.23 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.03 Total: 52.19 kcal Total: -85.14 3.62 -81.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084808494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.037 kcal (2) G-P(sol) polarization free energy of solvation -85.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds