Wall clock time and date at job start Tue Mar 31 2020 10:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37960 * 120.07776 * 2 1 4 4 C 1.38354 * 120.14839 * 180.25458 * 3 2 1 5 5 C 1.38363 * 120.29349 * 359.44371 * 4 3 2 6 6 C 1.37961 * 120.14098 * 0.55504 * 5 4 3 7 7 C 1.50697 * 120.07364 * 179.74206 * 6 5 4 8 8 C 1.39580 * 119.85465 * 359.72617 * 6 5 4 9 9 C 1.47846 * 120.14630 * 180.02562 * 8 6 5 10 10 O 1.21548 * 119.99970 * 269.98163 * 9 8 6 11 11 N 1.34777 * 119.99740 * 89.97552 * 9 8 6 12 12 C 1.46505 * 119.99688 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.55852 * 35.53890 * 12 11 9 14 14 C 1.54854 * 110.62621 * 158.61597 * 12 11 9 15 15 C 1.55844 * 103.44333 * 118.48563 * 14 12 11 16 16 H 1.09008 * 116.12186 * 159.14739 * 15 14 12 17 17 C 1.55845 * 105.06575 * 288.17422 * 15 14 12 18 18 C 1.54844 * 103.44432 * 71.82737 * 17 15 14 19 19 C 1.55844 * 103.44617 * 359.97438 * 18 17 15 20 20 H 1.09005 * 116.12759 * 159.15242 * 19 18 17 21 21 N 1.50235 * 101.05371 * 32.94111 * 15 14 12 22 22 C 1.36928 * 130.84286 * 126.04856 * 21 15 14 23 23 H 1.08001 * 120.00194 * 179.97438 * 22 21 15 24 24 C 1.38820 * 120.00009 * 359.97370 * 22 21 15 25 25 N 1.31618 * 119.99809 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00058 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47132 * 90.00031 * 26 24 22 28 28 H 1.48499 * 109.47262 * 209.99969 * 26 24 22 29 29 H 1.48502 * 109.47130 * 330.00071 * 26 24 22 30 30 H 1.09008 * 109.47158 * 89.99997 * 1 2 3 31 31 H 1.09001 * 109.47511 * 209.99935 * 1 2 3 32 32 H 1.09005 * 109.47147 * 330.00374 * 1 2 3 33 33 H 1.08004 * 119.92371 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.85691 * 179.70838 * 4 3 2 35 35 H 1.07996 * 119.93153 * 180.27700 * 5 4 3 36 36 H 1.08998 * 109.47223 * 269.98394 * 7 6 5 37 37 H 1.09005 * 109.46977 * 29.98307 * 7 6 5 38 38 H 1.09004 * 109.47104 * 149.98007 * 7 6 5 39 39 H 0.96998 * 120.00081 * 0.02562 * 11 9 8 40 40 H 1.08996 * 110.62562 * 236.97608 * 14 12 11 41 41 H 1.09000 * 110.62156 * 359.97438 * 14 12 11 42 42 H 1.09003 * 110.62581 * 190.31674 * 17 15 14 43 43 H 1.09000 * 110.62588 * 313.33848 * 17 15 14 44 44 H 1.08999 * 110.62980 * 241.50840 * 18 17 15 45 45 H 1.09000 * 110.62823 * 118.48704 * 18 17 15 46 46 H 0.97000 * 120.00121 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5819 1.1955 -0.0053 5 6 4.2813 0.0017 0.0009 6 6 3.6021 -1.1991 0.0010 7 6 4.3655 -2.4984 0.0019 8 6 2.2064 -1.2079 0.0005 9 6 1.4720 -2.4911 0.0011 10 8 1.1702 -3.0191 -1.0513 11 7 1.1373 -3.0753 1.1686 12 6 0.4100 -4.3471 1.1691 13 1 0.7351 -4.9743 0.3391 14 6 0.5977 -5.0822 2.5191 15 6 -0.8518 -5.1795 3.0833 16 1 -1.0229 -5.9484 3.8368 17 6 -1.2188 -3.7263 3.5100 18 6 -1.4065 -2.9912 2.1601 19 6 -1.1267 -4.1003 1.1016 20 1 -1.5313 -3.9254 0.1047 21 7 -1.6458 -5.3166 1.8153 22 6 -2.5607 -6.2594 1.4291 23 1 -3.0350 -6.1871 0.4615 24 6 -2.8785 -7.3081 2.2812 25 7 -2.3001 -7.3965 3.4602 26 14 -4.1271 -8.5938 1.7547 27 1 -3.4306 -9.7023 1.0535 28 1 -4.8243 -9.1266 2.9527 29 1 -5.1190 -7.9748 0.8391 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8901 0.5138 33 1 1.6584 2.1292 -0.0004 34 1 4.1184 2.1329 -0.0101 35 1 5.3613 0.0099 0.0013 36 1 4.5499 -2.8122 -1.0255 37 1 5.3167 -2.3606 0.5160 38 1 3.7820 -3.2623 0.5160 39 1 1.3779 -2.6538 2.0084 40 1 1.0154 -6.0763 2.3601 41 1 1.2322 -4.5007 3.1879 42 1 -2.1452 -3.7171 4.0843 43 1 -0.4067 -3.2774 4.0820 44 1 -0.6876 -2.1777 2.0626 45 1 -2.4260 -2.6175 2.0648 46 1 -2.5225 -8.1291 4.0558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096048297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:25 Heat of formation + Delta-G solvation = 28.557152 kcal Electronic energy + Delta-G solvation = -27025.378653 eV Core-core repulsion = 23494.727405 eV Total energy + Delta-G solvation = -3530.651248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54156 -39.29508 -37.81604 -33.89656 -33.74988 -32.45272 -31.99864 -29.30908 -29.02696 -28.16038 -27.15913 -26.79550 -24.32498 -23.29832 -21.31579 -20.85411 -20.39817 -19.50227 -18.59253 -17.62471 -16.87034 -16.11637 -15.88352 -15.42369 -14.91798 -14.63288 -14.37149 -14.04502 -13.99886 -13.50611 -13.43798 -13.27898 -13.13924 -12.81464 -12.35665 -12.24089 -12.05031 -11.80032 -11.72346 -11.55119 -11.47379 -11.19755 -11.03138 -10.90835 -10.89193 -10.83168 -10.21486 -10.09691 -9.86288 -9.66713 -9.37972 -9.24475 -8.93558 -8.88225 -8.74586 -8.51119 -6.91691 -5.72891 -3.10784 1.02497 1.18533 2.81691 3.35886 3.40362 3.45356 3.46757 3.60227 4.45199 4.58787 4.64310 4.73895 4.85882 5.09047 5.19779 5.23083 5.36166 5.38585 5.45724 5.50466 5.56949 5.58303 5.66312 5.71574 5.79899 5.84116 5.93659 5.97035 6.05177 6.08777 6.14542 6.25045 6.29266 6.31184 6.35513 6.40755 6.53725 6.61596 6.67715 6.77424 6.80867 6.96424 6.99145 7.26714 7.52304 7.73759 7.84023 8.16746 8.47240 9.10416 9.72956 10.53263 11.36753 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.003462 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.875964 B = 8086.931829 C = 8292.104954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.045 4.045 3 C -0.130 4.130 4 C -0.101 4.101 5 C -0.131 4.131 6 C -0.048 4.048 7 C -0.122 4.122 8 C -0.124 4.124 9 C 0.561 3.439 10 O -0.534 6.534 11 N -0.705 5.705 12 C 0.126 3.874 13 H 0.083 0.917 14 C -0.140 4.140 15 C 0.154 3.846 16 H 0.155 0.845 17 C -0.137 4.137 18 C -0.131 4.131 19 C 0.128 3.872 20 H 0.085 0.915 21 N -0.590 5.590 22 C -0.210 4.210 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.924 5.924 26 Si 0.917 3.083 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.396 0.604 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.429 16.305 -1.998 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.045 4.045 3 C -0.149 4.149 4 C -0.119 4.119 5 C -0.149 4.149 6 C -0.049 4.049 7 C -0.178 4.178 8 C -0.127 4.127 9 C 0.346 3.654 10 O -0.411 6.411 11 N -0.355 5.355 12 C 0.020 3.980 13 H 0.101 0.899 14 C -0.180 4.180 15 C 0.047 3.953 16 H 0.172 0.828 17 C -0.177 4.177 18 C -0.171 4.171 19 C 0.019 3.981 20 H 0.103 0.897 21 N -0.310 5.310 22 C -0.338 4.338 23 H 0.097 0.903 24 C -0.207 4.207 25 N -0.572 5.572 26 Si 0.747 3.253 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.231 0.769 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.983 15.590 -2.713 19.849 hybrid contribution -0.427 -0.274 0.061 0.511 sum 11.556 15.316 -2.651 19.368 Atomic orbital electron populations 1.20967 0.90568 1.03563 1.03196 1.19923 0.96229 0.91680 0.96691 1.20948 0.94246 0.97276 1.02382 1.21218 0.94214 0.98000 0.98506 1.20927 0.99824 0.91636 1.02529 1.19897 0.91938 0.95924 0.97097 1.20887 0.99845 0.94061 1.03048 1.19831 0.93490 0.93461 1.05903 1.18201 0.78683 0.84052 0.84437 1.90802 1.54616 1.64322 1.31348 1.46333 1.57170 1.24390 1.07651 1.22678 0.93258 0.82834 0.99197 0.89914 1.23284 1.00834 0.99114 0.94760 1.23768 0.85805 0.94641 0.91064 0.82836 1.23053 0.99828 0.99009 0.95761 1.22942 0.99697 0.97330 0.97102 1.23186 0.91249 0.88551 0.95077 0.89720 1.46486 1.45764 1.24640 1.14123 1.19064 1.13623 1.00761 1.00309 0.90319 1.24691 1.00644 0.98934 0.96460 1.69432 1.45883 1.32988 1.08895 0.86031 0.80606 0.81425 0.77208 1.21650 1.21696 1.20757 0.90500 0.90624 0.91026 0.85654 0.85854 0.85703 0.90554 0.91044 0.91145 0.76928 0.91578 0.92706 0.92645 0.93657 0.92990 0.93033 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.62 36.00 0.35 -1.11 16 2 C -0.04 -0.54 5.91 -104.23 -0.62 -1.16 16 3 C -0.13 -1.29 9.69 -39.64 -0.38 -1.68 16 4 C -0.10 -0.91 10.04 -39.49 -0.40 -1.31 16 5 C -0.13 -1.27 9.69 -39.64 -0.38 -1.66 16 6 C -0.05 -0.57 5.91 -104.22 -0.62 -1.18 16 7 C -0.12 -1.31 9.62 36.00 0.35 -0.96 16 8 C -0.12 -1.68 5.63 -104.96 -0.59 -2.27 16 9 C 0.56 9.04 4.18 -12.33 -0.05 8.99 16 10 O -0.53 -10.80 16.81 5.32 0.09 -10.71 16 11 N -0.70 -10.69 3.65 -52.37 -0.19 -10.88 16 12 C 0.13 2.35 3.10 -65.46 -0.20 2.15 16 13 H 0.08 1.74 7.65 -51.93 -0.40 1.34 16 14 C -0.14 -2.63 6.20 -24.24 -0.15 -2.78 16 15 C 0.15 3.43 4.72 -62.80 -0.30 3.13 16 16 H 0.15 3.92 5.52 -51.92 -0.29 3.64 16 17 C -0.14 -2.61 6.44 -24.24 -0.16 -2.77 16 18 C -0.13 -2.38 6.33 -24.24 -0.15 -2.54 16 19 C 0.13 2.68 5.35 -62.81 -0.34 2.34 16 20 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 21 N -0.59 -14.61 2.99 -145.82 -0.44 -15.04 16 22 C -0.21 -5.77 10.59 -15.06 -0.16 -5.93 16 23 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.92 -26.05 10.46 55.49 0.58 -25.47 16 26 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 31 H 0.07 0.99 5.72 -51.93 -0.30 0.70 16 32 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 33 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.07 0.85 7.08 -51.93 -0.37 0.48 16 39 H 0.40 5.17 7.97 -40.82 -0.33 4.85 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.05 0.87 7.36 -51.93 -0.38 0.48 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.04 0.73 7.82 -51.93 -0.41 0.33 16 44 H 0.05 0.81 5.09 -51.93 -0.26 0.54 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -30.96 362.86 -10.33 -41.29 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.92 Total: 7.53 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.90 Total: -9.16 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.05 Total: -51.39 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.96 -10.33 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096048297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.848 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds