Wall clock time and date at job start Tue Mar 31 2020 10:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37960 * 120.07776 * 2 1 4 4 C 1.38354 * 120.14839 * 180.25458 * 3 2 1 5 5 C 1.38363 * 120.29349 * 359.44371 * 4 3 2 6 6 C 1.37961 * 120.14098 * 0.55504 * 5 4 3 7 7 C 1.50697 * 120.07364 * 179.74206 * 6 5 4 8 8 C 1.39580 * 119.85465 * 359.72617 * 6 5 4 9 9 C 1.47846 * 120.14630 * 180.02562 * 8 6 5 10 10 O 1.21548 * 119.99970 * 269.98163 * 9 8 6 11 11 N 1.34777 * 119.99740 * 89.97552 * 9 8 6 12 12 C 1.46505 * 119.99688 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.55852 * 35.53890 * 12 11 9 14 14 C 1.54854 * 110.62621 * 158.61597 * 12 11 9 15 15 C 1.55844 * 103.44333 * 118.48563 * 14 12 11 16 16 H 1.09008 * 116.12186 * 159.14739 * 15 14 12 17 17 C 1.55845 * 105.06575 * 288.17422 * 15 14 12 18 18 C 1.54844 * 103.44432 * 71.82737 * 17 15 14 19 19 C 1.55844 * 103.44617 * 359.97438 * 18 17 15 20 20 H 1.09005 * 116.12759 * 159.15242 * 19 18 17 21 21 N 1.50235 * 101.05371 * 32.94111 * 15 14 12 22 22 C 1.36928 * 130.84286 * 126.04856 * 21 15 14 23 23 H 1.08001 * 120.00194 * 179.97438 * 22 21 15 24 24 C 1.38820 * 120.00009 * 359.97370 * 22 21 15 25 25 N 1.31618 * 119.99809 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00058 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47132 * 90.00031 * 26 24 22 28 28 H 1.48499 * 109.47262 * 209.99969 * 26 24 22 29 29 H 1.48502 * 109.47130 * 330.00071 * 26 24 22 30 30 H 1.09008 * 109.47158 * 89.99997 * 1 2 3 31 31 H 1.09001 * 109.47511 * 209.99935 * 1 2 3 32 32 H 1.09005 * 109.47147 * 330.00374 * 1 2 3 33 33 H 1.08004 * 119.92371 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.85691 * 179.70838 * 4 3 2 35 35 H 1.07996 * 119.93153 * 180.27700 * 5 4 3 36 36 H 1.08998 * 109.47223 * 269.98394 * 7 6 5 37 37 H 1.09005 * 109.46977 * 29.98307 * 7 6 5 38 38 H 1.09004 * 109.47104 * 149.98007 * 7 6 5 39 39 H 0.96998 * 120.00081 * 0.02562 * 11 9 8 40 40 H 1.08996 * 110.62562 * 236.97608 * 14 12 11 41 41 H 1.09000 * 110.62156 * 359.97438 * 14 12 11 42 42 H 1.09003 * 110.62581 * 190.31674 * 17 15 14 43 43 H 1.09000 * 110.62588 * 313.33848 * 17 15 14 44 44 H 1.08999 * 110.62980 * 241.50840 * 18 17 15 45 45 H 1.09000 * 110.62823 * 118.48704 * 18 17 15 46 46 H 0.97000 * 120.00121 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5819 1.1955 -0.0053 5 6 4.2813 0.0017 0.0009 6 6 3.6021 -1.1991 0.0010 7 6 4.3655 -2.4984 0.0019 8 6 2.2064 -1.2079 0.0005 9 6 1.4720 -2.4911 0.0011 10 8 1.1702 -3.0191 -1.0513 11 7 1.1373 -3.0753 1.1686 12 6 0.4100 -4.3471 1.1691 13 1 0.7351 -4.9743 0.3391 14 6 0.5977 -5.0822 2.5191 15 6 -0.8518 -5.1795 3.0833 16 1 -1.0229 -5.9484 3.8368 17 6 -1.2188 -3.7263 3.5100 18 6 -1.4065 -2.9912 2.1601 19 6 -1.1267 -4.1003 1.1016 20 1 -1.5313 -3.9254 0.1047 21 7 -1.6458 -5.3166 1.8153 22 6 -2.5607 -6.2594 1.4291 23 1 -3.0350 -6.1871 0.4615 24 6 -2.8785 -7.3081 2.2812 25 7 -2.3001 -7.3965 3.4602 26 14 -4.1271 -8.5938 1.7547 27 1 -3.4306 -9.7023 1.0535 28 1 -4.8243 -9.1266 2.9527 29 1 -5.1190 -7.9748 0.8391 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8901 0.5138 33 1 1.6584 2.1292 -0.0004 34 1 4.1184 2.1329 -0.0101 35 1 5.3613 0.0099 0.0013 36 1 4.5499 -2.8122 -1.0255 37 1 5.3167 -2.3606 0.5160 38 1 3.7820 -3.2623 0.5160 39 1 1.3779 -2.6538 2.0084 40 1 1.0154 -6.0763 2.3601 41 1 1.2322 -4.5007 3.1879 42 1 -2.1452 -3.7171 4.0843 43 1 -0.4067 -3.2774 4.0820 44 1 -0.6876 -2.1777 2.0626 45 1 -2.4260 -2.6175 2.0648 46 1 -2.5225 -8.1291 4.0558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096048297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:24 Heat of formation + Delta-G solvation = 11.535059 kcal Electronic energy + Delta-G solvation = -27026.116786 eV Core-core repulsion = 23494.727405 eV Total energy + Delta-G solvation = -3531.389382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80062 -40.59626 -39.08578 -35.48163 -34.56746 -34.24571 -32.97142 -31.02837 -30.72410 -29.49178 -28.39407 -27.57530 -26.18508 -24.42399 -22.80528 -21.77439 -21.66444 -21.11920 -20.19658 -19.07528 -18.45079 -17.20346 -17.09639 -16.83287 -16.40021 -16.18575 -15.77631 -15.44930 -14.93154 -14.81761 -14.63200 -14.16723 -14.07329 -13.92046 -13.88567 -13.65084 -13.46575 -13.24475 -12.92540 -12.87222 -12.79024 -12.60778 -12.56019 -12.43209 -12.34500 -12.00977 -11.96563 -11.90619 -11.58670 -11.21174 -11.06880 -10.87357 -10.80802 -10.04617 -9.74264 -9.52619 -8.87811 -7.80703 -5.20118 0.19130 0.40625 1.45529 1.46821 1.54619 1.55489 2.16027 2.49565 2.73063 3.32639 3.47584 3.69149 3.81381 3.86249 3.95650 4.06911 4.09252 4.12780 4.37739 4.39537 4.41351 4.45661 4.54726 4.58207 4.66755 4.68130 4.69821 4.76182 4.77531 4.85740 4.91904 4.94225 5.04766 5.12246 5.16710 5.19674 5.29910 5.30686 5.43543 5.50216 5.52282 5.54335 5.59305 5.71263 5.87356 6.02824 6.25849 6.54367 7.04289 7.21441 7.67617 8.53702 9.26203 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.003462 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.875964 B = 8086.931829 C = 8292.104954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.129 4.129 4 C -0.093 4.093 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.121 4.121 8 C -0.150 4.150 9 C 0.569 3.431 10 O -0.584 6.584 11 N -0.690 5.690 12 C 0.145 3.855 13 H 0.052 0.948 14 C -0.125 4.125 15 C 0.139 3.861 16 H 0.123 0.877 17 C -0.126 4.126 18 C -0.115 4.115 19 C 0.120 3.880 20 H 0.064 0.936 21 N -0.617 5.617 22 C -0.226 4.226 23 H 0.070 0.930 24 C -0.061 4.061 25 N -0.943 5.943 26 Si 0.976 3.024 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.412 0.588 40 H 0.047 0.953 41 H 0.095 0.905 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.449 19.532 -1.344 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.059 4.059 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.147 4.147 6 C -0.061 4.061 7 C -0.178 4.178 8 C -0.153 4.153 9 C 0.356 3.644 10 O -0.464 6.464 11 N -0.341 5.341 12 C 0.038 3.962 13 H 0.070 0.930 14 C -0.164 4.164 15 C 0.033 3.967 16 H 0.140 0.860 17 C -0.165 4.165 18 C -0.154 4.154 19 C 0.012 3.988 20 H 0.082 0.918 21 N -0.339 5.339 22 C -0.355 4.355 23 H 0.088 0.912 24 C -0.254 4.254 25 N -0.592 5.592 26 Si 0.805 3.195 27 H -0.217 1.217 28 H -0.216 1.216 29 H -0.202 1.202 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.249 0.751 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.031 18.865 -2.037 23.599 hybrid contribution -0.988 -1.194 -0.199 1.562 sum 13.042 17.671 -2.236 22.077 Atomic orbital electron populations 1.20958 0.90747 1.03762 1.02729 1.20058 0.96347 0.92032 0.97453 1.21274 0.94963 0.97271 1.01200 1.21669 0.94002 0.99176 0.96196 1.21275 1.01281 0.90910 1.01185 1.20078 0.91277 0.97178 0.97563 1.20897 1.00819 0.93356 1.02702 1.19697 0.94273 0.92183 1.09158 1.18671 0.77643 0.84589 0.83491 1.90773 1.56559 1.65921 1.33104 1.46071 1.56461 1.23068 1.08497 1.22135 0.92043 0.83952 0.98081 0.92961 1.23114 0.99281 0.98969 0.95079 1.23693 0.87383 0.95755 0.89861 0.86021 1.22946 1.00384 0.96996 0.96150 1.22823 1.00286 0.96977 0.95351 1.23292 0.92358 0.88429 0.94725 0.91761 1.46735 1.46044 1.25350 1.15793 1.19291 1.14272 1.01809 1.00138 0.91201 1.25399 1.02588 1.00683 0.96749 1.69657 1.46851 1.33252 1.09472 0.85115 0.78637 0.79052 0.76739 1.21653 1.21634 1.20164 0.91413 0.92717 0.88413 0.83091 0.82417 0.82958 0.91331 0.88272 0.93044 0.75087 0.93368 0.88690 0.94408 0.89645 0.89745 0.93725 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.62 71.23 0.69 -2.02 16 2 C -0.06 -1.28 5.91 -19.61 -0.12 -1.40 16 3 C -0.13 -2.05 9.69 22.23 0.22 -1.83 16 4 C -0.09 -1.23 10.04 22.33 0.22 -1.00 16 5 C -0.13 -1.98 9.69 22.23 0.22 -1.77 16 6 C -0.06 -1.29 5.91 -19.61 -0.12 -1.41 16 7 C -0.12 -2.43 9.62 71.24 0.69 -1.74 16 8 C -0.15 -3.88 5.63 -20.09 -0.11 -3.99 16 9 C 0.57 18.38 4.18 86.79 0.36 18.74 16 10 O -0.58 -24.57 16.81 -3.87 -0.06 -24.64 16 11 N -0.69 -20.45 3.65 -437.87 -1.60 -22.05 16 12 C 0.14 5.50 3.10 46.59 0.14 5.64 16 13 H 0.05 2.32 7.65 -2.39 -0.02 2.30 16 14 C -0.12 -4.67 6.20 32.21 0.20 -4.47 16 15 C 0.14 6.28 4.72 46.23 0.22 6.50 16 16 H 0.12 6.41 5.52 -2.38 -0.01 6.40 16 17 C -0.13 -4.64 6.44 32.21 0.21 -4.43 16 18 C -0.12 -4.09 6.33 32.21 0.20 -3.89 16 19 C 0.12 5.15 5.35 46.20 0.25 5.40 16 20 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 21 N -0.62 -31.70 2.99 -615.26 -1.84 -33.54 16 22 C -0.23 -12.96 10.59 84.04 0.89 -12.07 16 23 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 25 N -0.94 -54.90 10.46 21.65 0.23 -54.68 16 26 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 29 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 30 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.05 1.38 5.72 -2.39 -0.01 1.37 16 32 H 0.10 1.52 8.09 -2.38 -0.02 1.50 16 33 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.37 8.09 -2.38 -0.02 1.35 16 38 H 0.05 1.21 7.08 -2.38 -0.02 1.19 16 39 H 0.41 9.76 7.97 -92.71 -0.74 9.02 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 2.76 7.36 -2.39 -0.02 2.74 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 2.47 7.82 -2.39 -0.02 2.45 16 44 H 0.08 2.44 5.09 -2.39 -0.01 2.43 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -71.71 362.86 3.63 -68.09 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.25 Total: 25.03 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 4.62 Total: -6.75 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -3.21 Total: -110.27 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -71.71 3.63 -68.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096048297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.623 kcal (2) G-P(sol) polarization free energy of solvation -71.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds