Wall clock time and date at job start Tue Mar 31 2020 10:46:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.37960 * 120.07776 * 2 1
4 4 C 1.38354 * 120.14839 * 180.25458 * 3 2 1
5 5 C 1.38363 * 120.29349 * 359.44371 * 4 3 2
6 6 C 1.37961 * 120.14098 * 0.55504 * 5 4 3
7 7 C 1.50697 * 120.07364 * 179.74206 * 6 5 4
8 8 C 1.39580 * 119.85465 * 359.72617 * 6 5 4
9 9 C 1.47846 * 120.14630 * 180.02562 * 8 6 5
10 10 O 1.21548 * 119.99970 * 269.98163 * 9 8 6
11 11 N 1.34777 * 119.99740 * 89.97552 * 9 8 6
12 12 C 1.46505 * 119.99688 * 180.02562 * 11 9 8
13 13 H 1.08994 * 110.55852 * 35.53890 * 12 11 9
14 14 C 1.54854 * 110.62621 * 158.61597 * 12 11 9
15 15 C 1.55844 * 103.44333 * 118.48563 * 14 12 11
16 16 H 1.09008 * 116.12186 * 159.14739 * 15 14 12
17 17 C 1.55845 * 105.06575 * 288.17422 * 15 14 12
18 18 C 1.54844 * 103.44432 * 71.82737 * 17 15 14
19 19 C 1.55844 * 103.44617 * 359.97438 * 18 17 15
20 20 H 1.09005 * 116.12759 * 159.15242 * 19 18 17
21 21 N 1.50235 * 101.05371 * 32.94111 * 15 14 12
22 22 C 1.36928 * 130.84286 * 126.04856 * 21 15 14
23 23 H 1.08001 * 120.00194 * 179.97438 * 22 21 15
24 24 C 1.38820 * 120.00009 * 359.97370 * 22 21 15
25 25 N 1.31618 * 119.99809 * 359.97438 * 24 22 21
26 26 Si 1.86794 * 120.00058 * 179.97438 * 24 22 21
27 27 H 1.48507 * 109.47132 * 90.00031 * 26 24 22
28 28 H 1.48499 * 109.47262 * 209.99969 * 26 24 22
29 29 H 1.48502 * 109.47130 * 330.00071 * 26 24 22
30 30 H 1.09008 * 109.47158 * 89.99997 * 1 2 3
31 31 H 1.09001 * 109.47511 * 209.99935 * 1 2 3
32 32 H 1.09005 * 109.47147 * 330.00374 * 1 2 3
33 33 H 1.08004 * 119.92371 * 359.97438 * 3 2 1
34 34 H 1.08001 * 119.85691 * 179.70838 * 4 3 2
35 35 H 1.07996 * 119.93153 * 180.27700 * 5 4 3
36 36 H 1.08998 * 109.47223 * 269.98394 * 7 6 5
37 37 H 1.09005 * 109.46977 * 29.98307 * 7 6 5
38 38 H 1.09004 * 109.47104 * 149.98007 * 7 6 5
39 39 H 0.96998 * 120.00081 * 0.02562 * 11 9 8
40 40 H 1.08996 * 110.62562 * 236.97608 * 14 12 11
41 41 H 1.09000 * 110.62156 * 359.97438 * 14 12 11
42 42 H 1.09003 * 110.62581 * 190.31674 * 17 15 14
43 43 H 1.09000 * 110.62588 * 313.33848 * 17 15 14
44 44 H 1.08999 * 110.62980 * 241.50840 * 18 17 15
45 45 H 1.09000 * 110.62823 * 118.48704 * 18 17 15
46 46 H 0.97000 * 120.00121 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1984 1.1938 0.0000
4 6 3.5819 1.1955 -0.0053
5 6 4.2813 0.0017 0.0009
6 6 3.6021 -1.1991 0.0010
7 6 4.3655 -2.4984 0.0019
8 6 2.2064 -1.2079 0.0005
9 6 1.4720 -2.4911 0.0011
10 8 1.1702 -3.0191 -1.0513
11 7 1.1373 -3.0753 1.1686
12 6 0.4100 -4.3471 1.1691
13 1 0.7351 -4.9743 0.3391
14 6 0.5977 -5.0822 2.5191
15 6 -0.8518 -5.1795 3.0833
16 1 -1.0229 -5.9484 3.8368
17 6 -1.2188 -3.7263 3.5100
18 6 -1.4065 -2.9912 2.1601
19 6 -1.1267 -4.1003 1.1016
20 1 -1.5313 -3.9254 0.1047
21 7 -1.6458 -5.3166 1.8153
22 6 -2.5607 -6.2594 1.4291
23 1 -3.0350 -6.1871 0.4615
24 6 -2.8785 -7.3081 2.2812
25 7 -2.3001 -7.3965 3.4602
26 14 -4.1271 -8.5938 1.7547
27 1 -3.4306 -9.7023 1.0535
28 1 -4.8243 -9.1266 2.9527
29 1 -5.1190 -7.9748 0.8391
30 1 -0.3634 0.0000 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3634 0.8901 0.5138
33 1 1.6584 2.1292 -0.0004
34 1 4.1184 2.1329 -0.0101
35 1 5.3613 0.0099 0.0013
36 1 4.5499 -2.8122 -1.0255
37 1 5.3167 -2.3606 0.5160
38 1 3.7820 -3.2623 0.5160
39 1 1.3779 -2.6538 2.0084
40 1 1.0154 -6.0763 2.3601
41 1 1.2322 -4.5007 3.1879
42 1 -2.1452 -3.7171 4.0843
43 1 -0.4067 -3.2774 4.0820
44 1 -0.6876 -2.1777 2.0626
45 1 -2.4260 -2.6175 2.0648
46 1 -2.5225 -8.1291 4.0558
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001096048297.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:46:24
Heat of formation + Delta-G solvation = 11.535059 kcal
Electronic energy + Delta-G solvation = -27026.116786 eV
Core-core repulsion = 23494.727405 eV
Total energy + Delta-G solvation = -3531.389382 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.80062 -40.59626 -39.08578 -35.48163 -34.56746 -34.24571 -32.97142 -31.02837
-30.72410 -29.49178 -28.39407 -27.57530 -26.18508 -24.42399 -22.80528 -21.77439
-21.66444 -21.11920 -20.19658 -19.07528 -18.45079 -17.20346 -17.09639 -16.83287
-16.40021 -16.18575 -15.77631 -15.44930 -14.93154 -14.81761 -14.63200 -14.16723
-14.07329 -13.92046 -13.88567 -13.65084 -13.46575 -13.24475 -12.92540 -12.87222
-12.79024 -12.60778 -12.56019 -12.43209 -12.34500 -12.00977 -11.96563 -11.90619
-11.58670 -11.21174 -11.06880 -10.87357 -10.80802 -10.04617 -9.74264 -9.52619
-8.87811 -7.80703 -5.20118 0.19130 0.40625 1.45529 1.46821 1.54619
1.55489 2.16027 2.49565 2.73063 3.32639 3.47584 3.69149 3.81381
3.86249 3.95650 4.06911 4.09252 4.12780 4.37739 4.39537 4.41351
4.45661 4.54726 4.58207 4.66755 4.68130 4.69821 4.76182 4.77531
4.85740 4.91904 4.94225 5.04766 5.12246 5.16710 5.19674 5.29910
5.30686 5.43543 5.50216 5.52282 5.54335 5.59305 5.71263 5.87356
6.02824 6.25849 6.54367 7.04289 7.21441 7.67617 8.53702 9.26203
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.025614 B = 0.003462 C = 0.003376
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1092.875964 B = 8086.931829 C = 8292.104954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.058 4.058
3 C -0.129 4.129
4 C -0.093 4.093
5 C -0.129 4.129
6 C -0.060 4.060
7 C -0.121 4.121
8 C -0.150 4.150
9 C 0.569 3.431
10 O -0.584 6.584
11 N -0.690 5.690
12 C 0.145 3.855
13 H 0.052 0.948
14 C -0.125 4.125
15 C 0.139 3.861
16 H 0.123 0.877
17 C -0.126 4.126
18 C -0.115 4.115
19 C 0.120 3.880
20 H 0.064 0.936
21 N -0.617 5.617
22 C -0.226 4.226
23 H 0.070 0.930
24 C -0.061 4.061
25 N -0.943 5.943
26 Si 0.976 3.024
27 H -0.289 1.289
28 H -0.290 1.290
29 H -0.276 1.276
30 H 0.067 0.933
31 H 0.054 0.946
32 H 0.097 0.903
33 H 0.151 0.849
34 H 0.158 0.842
35 H 0.153 0.847
36 H 0.068 0.932
37 H 0.099 0.901
38 H 0.051 0.949
39 H 0.412 0.588
40 H 0.047 0.953
41 H 0.095 0.905
42 H 0.037 0.963
43 H 0.085 0.915
44 H 0.084 0.916
45 H 0.044 0.956
46 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.449 19.532 -1.344 24.333
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.059 4.059
3 C -0.147 4.147
4 C -0.110 4.110
5 C -0.147 4.147
6 C -0.061 4.061
7 C -0.178 4.178
8 C -0.153 4.153
9 C 0.356 3.644
10 O -0.464 6.464
11 N -0.341 5.341
12 C 0.038 3.962
13 H 0.070 0.930
14 C -0.164 4.164
15 C 0.033 3.967
16 H 0.140 0.860
17 C -0.165 4.165
18 C -0.154 4.154
19 C 0.012 3.988
20 H 0.082 0.918
21 N -0.339 5.339
22 C -0.355 4.355
23 H 0.088 0.912
24 C -0.254 4.254
25 N -0.592 5.592
26 Si 0.805 3.195
27 H -0.217 1.217
28 H -0.216 1.216
29 H -0.202 1.202
30 H 0.086 0.914
31 H 0.073 0.927
32 H 0.116 0.884
33 H 0.169 0.831
34 H 0.176 0.824
35 H 0.170 0.830
36 H 0.087 0.913
37 H 0.117 0.883
38 H 0.070 0.930
39 H 0.249 0.751
40 H 0.066 0.934
41 H 0.113 0.887
42 H 0.056 0.944
43 H 0.104 0.896
44 H 0.103 0.897
45 H 0.063 0.937
46 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 14.031 18.865 -2.037 23.599
hybrid contribution -0.988 -1.194 -0.199 1.562
sum 13.042 17.671 -2.236 22.077
Atomic orbital electron populations
1.20958 0.90747 1.03762 1.02729 1.20058 0.96347 0.92032 0.97453
1.21274 0.94963 0.97271 1.01200 1.21669 0.94002 0.99176 0.96196
1.21275 1.01281 0.90910 1.01185 1.20078 0.91277 0.97178 0.97563
1.20897 1.00819 0.93356 1.02702 1.19697 0.94273 0.92183 1.09158
1.18671 0.77643 0.84589 0.83491 1.90773 1.56559 1.65921 1.33104
1.46071 1.56461 1.23068 1.08497 1.22135 0.92043 0.83952 0.98081
0.92961 1.23114 0.99281 0.98969 0.95079 1.23693 0.87383 0.95755
0.89861 0.86021 1.22946 1.00384 0.96996 0.96150 1.22823 1.00286
0.96977 0.95351 1.23292 0.92358 0.88429 0.94725 0.91761 1.46735
1.46044 1.25350 1.15793 1.19291 1.14272 1.01809 1.00138 0.91201
1.25399 1.02588 1.00683 0.96749 1.69657 1.46851 1.33252 1.09472
0.85115 0.78637 0.79052 0.76739 1.21653 1.21634 1.20164 0.91413
0.92717 0.88413 0.83091 0.82417 0.82958 0.91331 0.88272 0.93044
0.75087 0.93368 0.88690 0.94408 0.89645 0.89745 0.93725 0.94080
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.70 9.62 71.23 0.69 -2.02 16
2 C -0.06 -1.28 5.91 -19.61 -0.12 -1.40 16
3 C -0.13 -2.05 9.69 22.23 0.22 -1.83 16
4 C -0.09 -1.23 10.04 22.33 0.22 -1.00 16
5 C -0.13 -1.98 9.69 22.23 0.22 -1.77 16
6 C -0.06 -1.29 5.91 -19.61 -0.12 -1.41 16
7 C -0.12 -2.43 9.62 71.24 0.69 -1.74 16
8 C -0.15 -3.88 5.63 -20.09 -0.11 -3.99 16
9 C 0.57 18.38 4.18 86.79 0.36 18.74 16
10 O -0.58 -24.57 16.81 -3.87 -0.06 -24.64 16
11 N -0.69 -20.45 3.65 -437.87 -1.60 -22.05 16
12 C 0.14 5.50 3.10 46.59 0.14 5.64 16
13 H 0.05 2.32 7.65 -2.39 -0.02 2.30 16
14 C -0.12 -4.67 6.20 32.21 0.20 -4.47 16
15 C 0.14 6.28 4.72 46.23 0.22 6.50 16
16 H 0.12 6.41 5.52 -2.38 -0.01 6.40 16
17 C -0.13 -4.64 6.44 32.21 0.21 -4.43 16
18 C -0.12 -4.09 6.33 32.21 0.20 -3.89 16
19 C 0.12 5.15 5.35 46.20 0.25 5.40 16
20 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16
21 N -0.62 -31.70 2.99 -615.26 -1.84 -33.54 16
22 C -0.23 -12.96 10.59 84.04 0.89 -12.07 16
23 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16
24 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16
25 N -0.94 -54.90 10.46 21.65 0.23 -54.68 16
26 Si 0.98 46.51 29.55 68.60 2.03 48.54 16
27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16
28 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16
29 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16
30 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16
31 H 0.05 1.38 5.72 -2.39 -0.01 1.37 16
32 H 0.10 1.52 8.09 -2.38 -0.02 1.50 16
33 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16
34 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16
35 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16
36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
37 H 0.10 1.37 8.09 -2.38 -0.02 1.35 16
38 H 0.05 1.21 7.08 -2.38 -0.02 1.19 16
39 H 0.41 9.76 7.97 -92.71 -0.74 9.02 16
40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16
41 H 0.09 2.76 7.36 -2.39 -0.02 2.74 16
42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16
43 H 0.09 2.47 7.82 -2.39 -0.02 2.45 16
44 H 0.08 2.44 5.09 -2.39 -0.01 2.43 16
45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16
46 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16
Total: -1.00 -71.71 362.86 3.63 -68.09
By element:
Atomic # 1 Polarization: 24.78 SS G_CDS: 0.25 Total: 25.03 kcal
Atomic # 6 Polarization: -11.37 SS G_CDS: 4.62 Total: -6.75 kcal
Atomic # 7 Polarization: -107.06 SS G_CDS: -3.21 Total: -110.27 kcal
Atomic # 8 Polarization: -24.57 SS G_CDS: -0.06 Total: -24.64 kcal
Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal
Total: -71.71 3.63 -68.09 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001096048297.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.623 kcal
(2) G-P(sol) polarization free energy of solvation -71.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.535 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds