Wall clock time and date at job start Tue Mar 31 2020 10:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38378 * 119.85551 * 2 1 4 4 C 1.37933 * 120.14808 * 179.97438 * 3 2 1 5 5 C 1.39602 * 119.85040 * 0.02742 * 4 3 2 6 6 C 1.47850 * 120.14121 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99686 * 173.86286 * 6 5 4 8 8 N 1.34773 * 119.99892 * 353.86815 * 6 5 4 9 9 C 1.46511 * 119.99581 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.68241 * 38.88449 * 9 8 6 11 11 C 1.55475 * 110.60525 * 162.02847 * 9 8 6 12 12 C 1.55852 * 103.32305 * 118.41580 * 11 9 8 13 13 H 1.09003 * 116.12616 * 159.23623 * 12 11 9 14 14 C 1.55386 * 105.04209 * 288.03741 * 12 11 9 15 15 C 1.54853 * 103.48730 * 72.08088 * 14 12 11 16 16 C 1.55845 * 110.62434 * 275.90048 * 9 8 6 17 17 H 1.09003 * 116.12607 * 82.36077 * 16 9 8 18 18 N 1.50235 * 101.05122 * 33.02253 * 12 11 9 19 19 C 1.36940 * 130.84114 * 126.07238 * 18 12 11 20 20 H 1.07993 * 120.00300 * 179.66410 * 19 18 12 21 21 C 1.38817 * 119.99693 * 359.65465 * 19 18 12 22 22 N 1.31615 * 119.99727 * 359.72963 * 21 19 18 23 23 Si 1.86790 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47493 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47230 * 120.00293 * 23 21 19 26 26 H 1.48508 * 109.47209 * 240.00143 * 23 21 19 27 27 C 1.39553 * 119.71324 * 0.25372 * 5 4 3 28 28 C 1.50698 * 120.07413 * 179.74436 * 27 5 4 29 29 C 1.37981 * 119.84971 * 359.44577 * 27 5 4 30 30 H 1.08998 * 109.47301 * 89.99550 * 1 2 3 31 31 H 1.08997 * 109.47042 * 209.99773 * 1 2 3 32 32 H 1.08997 * 109.46742 * 329.99290 * 1 2 3 33 33 H 1.08000 * 119.92277 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.07670 * 180.02562 * 4 3 2 35 35 H 0.96997 * 120.00235 * 359.97438 * 8 6 5 36 36 H 1.08994 * 110.61751 * 0.02562 * 11 9 8 37 37 H 1.09005 * 110.75844 * 236.89410 * 11 9 8 38 38 H 1.08995 * 110.71521 * 313.51760 * 14 12 11 39 39 H 1.09009 * 110.49800 * 190.53008 * 14 12 11 40 40 H 1.09002 * 110.62106 * 241.38394 * 15 14 12 41 41 H 1.08988 * 110.76571 * 118.42536 * 15 14 12 42 42 H 0.97008 * 119.99584 * 179.97438 * 22 21 19 43 43 H 1.09007 * 109.47025 * 83.40954 * 28 27 5 44 44 H 1.09003 * 109.47157 * 203.40260 * 28 27 5 45 45 H 1.08998 * 109.47271 * 323.41100 * 28 27 5 46 46 H 1.08007 * 119.92684 * 180.30217 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2762 -0.0001 0.0005 6 6 5.7547 0.0000 0.0005 7 8 6.3625 -1.0467 0.1130 8 7 6.4286 1.1605 -0.1241 9 6 7.8937 1.1605 -0.1236 10 1 8.2789 0.3028 -0.6749 11 6 8.4410 2.4888 -0.7179 12 6 9.2425 3.1088 0.4662 13 1 9.9946 3.8515 0.2001 14 6 8.1635 3.5856 1.4777 15 6 7.6178 2.2644 2.0732 16 6 8.4420 1.1667 1.3352 17 1 8.4892 0.1988 1.8344 18 7 9.7554 1.8712 1.1461 19 6 11.0278 1.5016 1.4923 20 1 11.1999 0.5581 1.9887 21 6 12.0964 2.3398 1.2050 22 7 11.8872 3.4872 0.5951 23 14 13.8320 1.8355 1.6767 24 1 13.7986 0.5071 2.3398 25 1 14.6739 1.7577 0.4558 26 1 14.4034 2.8404 2.6089 27 6 3.5755 -1.2069 -0.0055 28 6 4.3240 -2.5148 -0.0114 29 6 2.1957 -1.1998 0.0003 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6523 2.1333 0.0004 34 1 4.1117 2.1445 0.0010 35 1 5.9436 1.9957 -0.2142 36 1 7.6213 3.1446 -1.0113 37 1 9.0984 2.2912 -1.5647 38 1 7.3712 4.1327 0.9668 39 1 8.6153 4.2001 2.2565 40 1 6.5548 2.1563 1.8576 41 1 7.7968 2.2217 3.1474 42 1 12.6339 4.0731 0.3947 43 1 4.6065 -2.7764 1.0085 44 1 3.6861 -3.2967 -0.4235 45 1 5.2208 -2.4174 -0.6231 46 1 1.6521 -2.1331 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096473058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:20 Heat of formation + Delta-G solvation = 32.703243 kcal Electronic energy + Delta-G solvation = -26503.806120 eV Core-core repulsion = 22973.334659 eV Total energy + Delta-G solvation = -3530.471460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.49077 -39.31464 -37.90436 -34.19952 -33.42943 -32.53884 -31.86951 -29.31687 -29.03758 -28.10893 -27.34750 -26.68034 -24.18478 -22.78500 -21.91430 -21.00877 -20.25515 -19.47427 -18.56818 -17.68941 -16.85484 -16.01801 -15.39675 -15.14497 -14.89030 -14.81625 -14.67868 -14.35452 -13.97162 -13.74915 -13.42922 -13.24363 -13.00218 -12.74035 -12.30383 -12.24893 -11.87992 -11.81954 -11.77740 -11.65074 -11.46210 -11.16383 -11.03702 -10.90260 -10.87749 -10.82132 -10.20368 -10.05125 -9.79465 -9.45314 -9.37311 -9.20005 -8.97243 -8.93059 -8.79404 -8.41188 -6.90322 -5.72147 -3.09844 0.78397 1.21671 2.96594 3.39572 3.44463 3.47245 3.49450 3.79770 4.46068 4.54563 4.56953 4.72279 4.87334 5.06027 5.14156 5.21789 5.28380 5.39294 5.40288 5.44540 5.55447 5.62364 5.76912 5.80593 5.83568 5.86099 5.87718 5.97882 6.08179 6.12301 6.13323 6.21107 6.31762 6.34344 6.35911 6.50708 6.55796 6.62813 6.71608 6.77998 6.83529 6.98684 7.01995 7.28567 7.54026 7.75711 7.86870 8.17682 8.52413 9.11440 9.73893 10.54380 11.37625 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.003115 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.872071 B = 8986.148346 C = 9564.751172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.078 4.078 5 C -0.139 4.139 6 C 0.551 3.449 7 O -0.534 6.534 8 N -0.707 5.707 9 C 0.129 3.871 10 H 0.082 0.918 11 C -0.139 4.139 12 C 0.153 3.847 13 H 0.155 0.845 14 C -0.137 4.137 15 C -0.131 4.131 16 C 0.129 3.871 17 H 0.086 0.914 18 N -0.590 5.590 19 C -0.208 4.208 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.924 5.924 23 Si 0.916 3.084 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.020 4.020 28 C -0.121 4.121 29 C -0.135 4.135 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.393 0.607 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.253 0.747 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.891 -3.318 -2.778 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.064 4.064 3 C -0.155 4.155 4 C -0.097 4.097 5 C -0.142 4.142 6 C 0.338 3.662 7 O -0.412 6.412 8 N -0.358 5.358 9 C 0.023 3.977 10 H 0.100 0.900 11 C -0.179 4.179 12 C 0.047 3.953 13 H 0.171 0.829 14 C -0.177 4.177 15 C -0.171 4.171 16 C 0.020 3.980 17 H 0.104 0.896 18 N -0.310 5.310 19 C -0.336 4.336 20 H 0.098 0.902 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.747 3.253 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.021 4.021 28 C -0.177 4.177 29 C -0.153 4.153 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.228 0.772 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.116 0.884 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.059 -4.031 -2.676 21.608 hybrid contribution 0.497 0.291 0.262 0.633 sum -20.562 -3.741 -2.415 21.038 Atomic orbital electron populations 1.20841 0.91051 1.02958 1.02489 1.20088 0.96159 0.93147 0.96982 1.20922 0.93855 0.97688 1.03056 1.21307 0.94451 0.97070 0.96885 1.19933 0.93400 0.93805 1.07097 1.18225 0.86699 0.84171 0.77063 1.90715 1.69899 1.30870 1.49758 1.46186 1.08093 1.08382 1.73106 1.22743 0.76433 0.99189 0.99289 0.89984 1.23390 0.99002 0.95011 1.00536 1.23668 0.92425 0.91074 0.88161 0.82865 1.22986 0.98458 0.96059 1.00153 1.22920 0.97754 0.97079 0.99318 1.23185 0.86777 0.95018 0.92996 0.89621 1.46490 1.00392 1.17095 1.67059 1.19119 0.81138 1.02288 1.31058 0.90246 1.24697 0.97906 0.96813 1.01425 1.69448 1.29578 1.11275 1.46926 0.85955 0.84163 0.77563 0.77579 1.20544 1.21790 1.21836 1.20061 0.93280 0.95052 0.93706 1.21087 1.00847 0.91966 1.03815 1.20916 0.93208 0.97746 1.03386 0.90918 0.91393 0.91343 0.85645 0.85589 0.77171 0.92817 0.91519 0.93679 0.92678 0.93132 0.93119 0.93641 0.90629 0.92768 0.88421 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.06 -0.58 5.89 -104.53 -0.62 -1.20 16 3 C -0.14 -1.29 9.68 -39.64 -0.38 -1.67 16 4 C -0.08 -0.85 9.53 -39.18 -0.37 -1.22 16 5 C -0.14 -1.86 5.87 -104.97 -0.62 -2.47 16 6 C 0.55 8.83 7.68 -12.33 -0.09 8.74 16 7 O -0.53 -10.15 13.11 5.32 0.07 -10.08 16 8 N -0.71 -10.79 3.56 -52.01 -0.19 -10.98 16 9 C 0.13 2.44 3.07 -65.09 -0.20 2.24 16 10 H 0.08 1.73 7.76 -51.93 -0.40 1.32 16 11 C -0.14 -2.65 6.23 -23.89 -0.15 -2.80 16 12 C 0.15 3.45 4.69 -63.05 -0.30 3.15 16 13 H 0.15 3.94 5.52 -51.93 -0.29 3.66 16 14 C -0.14 -2.65 6.42 -24.49 -0.16 -2.81 16 15 C -0.13 -2.47 6.33 -24.23 -0.15 -2.62 16 16 C 0.13 2.75 5.33 -62.80 -0.33 2.42 16 17 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 18 N -0.59 -14.77 2.99 -146.08 -0.44 -15.20 16 19 C -0.21 -5.77 10.59 -15.06 -0.16 -5.93 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.92 -26.21 10.47 55.49 0.58 -25.63 16 23 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C -0.02 -0.25 5.91 -104.23 -0.62 -0.87 16 28 C -0.12 -1.51 8.73 36.00 0.31 -1.19 16 29 C -0.13 -1.38 9.31 -39.64 -0.37 -1.74 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.14 6.45 -52.49 -0.34 0.80 16 35 H 0.39 4.98 6.13 -40.82 -0.25 4.73 16 36 H 0.05 0.85 7.32 -51.93 -0.38 0.47 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.04 0.73 7.80 -51.93 -0.41 0.33 16 39 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 40 H 0.05 0.83 6.52 -51.93 -0.34 0.49 16 41 H 0.05 0.99 8.14 -51.94 -0.42 0.56 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.54 8.04 -51.93 -0.42 0.12 16 45 H 0.10 1.44 5.86 -51.93 -0.30 1.14 16 46 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -30.73 360.46 -10.39 -41.12 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.89 Total: 7.05 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -3.94 Total: -8.81 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.04 Total: -51.81 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.73 -10.39 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096473058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.823 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds