Wall clock time and date at job start Tue Mar 31 2020 10:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38378 * 119.85551 * 2 1 4 4 C 1.37933 * 120.14808 * 179.97438 * 3 2 1 5 5 C 1.39602 * 119.85040 * 0.02742 * 4 3 2 6 6 C 1.47850 * 120.14121 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99686 * 173.86286 * 6 5 4 8 8 N 1.34773 * 119.99892 * 353.86815 * 6 5 4 9 9 C 1.46511 * 119.99581 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.68241 * 38.88449 * 9 8 6 11 11 C 1.55475 * 110.60525 * 162.02847 * 9 8 6 12 12 C 1.55852 * 103.32305 * 118.41580 * 11 9 8 13 13 H 1.09003 * 116.12616 * 159.23623 * 12 11 9 14 14 C 1.55386 * 105.04209 * 288.03741 * 12 11 9 15 15 C 1.54853 * 103.48730 * 72.08088 * 14 12 11 16 16 C 1.55845 * 110.62434 * 275.90048 * 9 8 6 17 17 H 1.09003 * 116.12607 * 82.36077 * 16 9 8 18 18 N 1.50235 * 101.05122 * 33.02253 * 12 11 9 19 19 C 1.36940 * 130.84114 * 126.07238 * 18 12 11 20 20 H 1.07993 * 120.00300 * 179.66410 * 19 18 12 21 21 C 1.38817 * 119.99693 * 359.65465 * 19 18 12 22 22 N 1.31615 * 119.99727 * 359.72963 * 21 19 18 23 23 Si 1.86790 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47493 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47230 * 120.00293 * 23 21 19 26 26 H 1.48508 * 109.47209 * 240.00143 * 23 21 19 27 27 C 1.39553 * 119.71324 * 0.25372 * 5 4 3 28 28 C 1.50698 * 120.07413 * 179.74436 * 27 5 4 29 29 C 1.37981 * 119.84971 * 359.44577 * 27 5 4 30 30 H 1.08998 * 109.47301 * 89.99550 * 1 2 3 31 31 H 1.08997 * 109.47042 * 209.99773 * 1 2 3 32 32 H 1.08997 * 109.46742 * 329.99290 * 1 2 3 33 33 H 1.08000 * 119.92277 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.07670 * 180.02562 * 4 3 2 35 35 H 0.96997 * 120.00235 * 359.97438 * 8 6 5 36 36 H 1.08994 * 110.61751 * 0.02562 * 11 9 8 37 37 H 1.09005 * 110.75844 * 236.89410 * 11 9 8 38 38 H 1.08995 * 110.71521 * 313.51760 * 14 12 11 39 39 H 1.09009 * 110.49800 * 190.53008 * 14 12 11 40 40 H 1.09002 * 110.62106 * 241.38394 * 15 14 12 41 41 H 1.08988 * 110.76571 * 118.42536 * 15 14 12 42 42 H 0.97008 * 119.99584 * 179.97438 * 22 21 19 43 43 H 1.09007 * 109.47025 * 83.40954 * 28 27 5 44 44 H 1.09003 * 109.47157 * 203.40260 * 28 27 5 45 45 H 1.08998 * 109.47271 * 323.41100 * 28 27 5 46 46 H 1.08007 * 119.92684 * 180.30217 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2762 -0.0001 0.0005 6 6 5.7547 0.0000 0.0005 7 8 6.3625 -1.0467 0.1130 8 7 6.4286 1.1605 -0.1241 9 6 7.8937 1.1605 -0.1236 10 1 8.2789 0.3028 -0.6749 11 6 8.4410 2.4888 -0.7179 12 6 9.2425 3.1088 0.4662 13 1 9.9946 3.8515 0.2001 14 6 8.1635 3.5856 1.4777 15 6 7.6178 2.2644 2.0732 16 6 8.4420 1.1667 1.3352 17 1 8.4892 0.1988 1.8344 18 7 9.7554 1.8712 1.1461 19 6 11.0278 1.5016 1.4923 20 1 11.1999 0.5581 1.9887 21 6 12.0964 2.3398 1.2050 22 7 11.8872 3.4872 0.5951 23 14 13.8320 1.8355 1.6767 24 1 13.7986 0.5071 2.3398 25 1 14.6739 1.7577 0.4558 26 1 14.4034 2.8404 2.6089 27 6 3.5755 -1.2069 -0.0055 28 6 4.3240 -2.5148 -0.0114 29 6 2.1957 -1.1998 0.0003 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6523 2.1333 0.0004 34 1 4.1117 2.1445 0.0010 35 1 5.9436 1.9957 -0.2142 36 1 7.6213 3.1446 -1.0113 37 1 9.0984 2.2912 -1.5647 38 1 7.3712 4.1327 0.9668 39 1 8.6153 4.2001 2.2565 40 1 6.5548 2.1563 1.8576 41 1 7.7968 2.2217 3.1474 42 1 12.6339 4.0731 0.3947 43 1 4.6065 -2.7764 1.0085 44 1 3.6861 -3.2967 -0.4235 45 1 5.2208 -2.4174 -0.6231 46 1 1.6521 -2.1331 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096473058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:19 Heat of formation + Delta-G solvation = 16.451369 kcal Electronic energy + Delta-G solvation = -26504.510854 eV Core-core repulsion = 22973.334659 eV Total energy + Delta-G solvation = -3531.176195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72937 -40.59747 -39.12180 -35.64385 -34.35412 -34.23756 -32.88762 -31.03022 -30.72074 -29.47251 -28.18208 -27.79899 -26.08382 -23.66977 -23.17360 -22.33429 -21.49181 -21.01698 -20.15682 -19.08546 -18.47197 -17.18145 -16.87413 -16.64333 -16.05238 -15.98033 -15.86785 -15.69070 -15.52317 -14.62270 -14.54892 -14.10392 -14.04259 -14.00303 -13.79877 -13.50907 -13.32146 -13.12029 -12.89215 -12.81203 -12.73458 -12.64011 -12.57264 -12.46307 -12.36696 -11.99354 -11.91146 -11.89200 -11.53801 -11.17059 -11.06688 -10.80440 -10.59498 -10.02937 -9.75107 -9.51174 -8.86502 -7.80834 -5.20022 -0.09112 0.43621 1.45344 1.46014 1.55818 1.91213 2.17883 2.49794 2.87104 3.32682 3.49594 3.72820 3.82106 3.91593 3.96306 4.02880 4.11128 4.14784 4.38681 4.39739 4.43139 4.46830 4.59354 4.67161 4.71194 4.76763 4.79043 4.81630 4.84828 4.90920 4.95826 5.05476 5.05932 5.13298 5.20123 5.24385 5.30829 5.34680 5.36619 5.45124 5.55217 5.63081 5.63847 5.74925 5.88161 6.01504 6.26568 6.63794 7.04856 7.30848 7.67792 8.54033 9.26279 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.003115 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.872071 B = 8986.148346 C = 9564.751172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.137 4.137 4 C -0.077 4.077 5 C -0.165 4.165 6 C 0.549 3.451 7 O -0.573 6.573 8 N -0.694 5.694 9 C 0.149 3.851 10 H 0.052 0.948 11 C -0.124 4.124 12 C 0.138 3.862 13 H 0.122 0.878 14 C -0.125 4.125 15 C -0.117 4.117 16 C 0.119 3.881 17 H 0.063 0.937 18 N -0.618 5.618 19 C -0.225 4.225 20 H 0.070 0.930 21 C -0.063 4.063 22 N -0.943 5.943 23 Si 0.976 3.024 24 H -0.275 1.275 25 H -0.291 1.291 26 H -0.290 1.290 27 C -0.039 4.039 28 C -0.116 4.116 29 C -0.139 4.139 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.410 0.590 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.249 0.751 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.642 -2.230 -3.018 25.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.154 4.154 4 C -0.096 4.096 5 C -0.168 4.168 6 C 0.338 3.662 7 O -0.454 6.454 8 N -0.347 5.347 9 C 0.042 3.958 10 H 0.070 0.930 11 C -0.164 4.164 12 C 0.032 3.968 13 H 0.139 0.861 14 C -0.164 4.164 15 C -0.156 4.156 16 C 0.011 3.989 17 H 0.081 0.919 18 N -0.340 5.340 19 C -0.354 4.354 20 H 0.087 0.913 21 C -0.255 4.255 22 N -0.593 5.593 23 Si 0.805 3.195 24 H -0.200 1.200 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.040 4.040 28 C -0.172 4.172 29 C -0.156 4.156 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.249 0.751 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.869 -2.927 -2.920 25.211 hybrid contribution 1.536 -0.107 0.328 1.574 sum -23.333 -3.034 -2.592 23.672 Atomic orbital electron populations 1.20922 0.88630 1.04144 1.03573 1.20527 0.97931 0.92643 0.94706 1.21313 0.93334 0.99072 1.01710 1.21538 0.95328 0.96659 0.96074 1.19782 0.91335 0.95437 1.10221 1.18767 0.88095 0.83473 0.75839 1.90710 1.71051 1.32299 1.51379 1.45895 1.06298 1.09304 1.73172 1.22176 0.78596 0.98073 0.96981 0.92973 1.23222 0.99513 0.95224 0.98435 1.23601 0.92963 0.90005 0.90191 0.86059 1.22880 0.98445 0.96120 0.98957 1.22814 0.99010 0.95528 0.98271 1.23297 0.86107 0.94698 0.94793 0.91858 1.46739 1.00617 1.18784 1.67831 1.19327 0.83043 1.02072 1.30915 0.91260 1.25405 1.01021 0.97107 1.02016 1.69668 1.30009 1.11843 1.47745 0.85036 0.80095 0.77302 0.77047 1.20014 1.21832 1.21705 1.20186 0.94473 0.94531 0.94840 1.20963 1.00255 0.93412 1.02597 1.21151 0.92191 0.99356 1.02951 0.89699 0.90536 0.89953 0.82655 0.83653 0.75099 0.88503 0.93344 0.89283 0.94551 0.89833 0.94143 0.94087 0.91885 0.90427 0.91326 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.01 71.24 0.71 -0.20 16 2 C -0.06 -0.84 5.89 -19.80 -0.12 -0.95 16 3 C -0.14 -1.96 9.68 22.23 0.22 -1.75 16 4 C -0.08 -1.41 9.53 22.53 0.21 -1.20 16 5 C -0.16 -4.16 5.87 -20.09 -0.12 -4.28 16 6 C 0.55 17.47 7.68 86.79 0.67 18.14 16 7 O -0.57 -22.77 13.11 -3.87 -0.05 -22.82 16 8 N -0.69 -20.19 3.56 -436.73 -1.55 -21.74 16 9 C 0.15 5.64 3.07 46.82 0.14 5.78 16 10 H 0.05 2.30 7.76 -2.39 -0.02 2.28 16 11 C -0.12 -4.62 6.23 32.43 0.20 -4.42 16 12 C 0.14 6.25 4.69 46.07 0.22 6.47 16 13 H 0.12 6.39 5.52 -2.39 -0.01 6.38 16 14 C -0.12 -4.61 6.42 32.05 0.21 -4.41 16 15 C -0.12 -4.25 6.33 32.21 0.20 -4.04 16 16 C 0.12 5.18 5.33 46.23 0.25 5.43 16 17 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 18 N -0.62 -31.93 2.99 -616.09 -1.84 -33.77 16 19 C -0.22 -12.95 10.59 84.03 0.89 -12.06 16 20 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 21 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 22 N -0.94 -55.09 10.47 21.65 0.23 -54.86 16 23 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 C -0.04 -0.94 5.91 -19.61 -0.12 -1.06 16 28 C -0.12 -2.95 8.73 71.24 0.62 -2.32 16 29 C -0.14 -2.47 9.31 22.23 0.21 -2.26 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 32 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 33 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.15 1.97 6.45 -2.91 -0.02 1.95 16 35 H 0.41 8.95 6.13 -92.71 -0.57 8.38 16 36 H 0.10 2.73 7.32 -2.39 -0.02 2.71 16 37 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.09 2.51 7.80 -2.39 -0.02 2.49 16 39 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.08 2.47 6.52 -2.39 -0.02 2.46 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 43 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 45 H 0.07 2.15 5.86 -2.39 -0.01 2.13 16 46 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -71.29 360.46 4.09 -67.20 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.42 Total: 23.47 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.86 Total: -6.25 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -3.17 Total: -110.37 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -71.29 4.09 -67.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096473058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.649 kcal (2) G-P(sol) polarization free energy of solvation -71.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds