Wall clock time and date at job start Tue Mar 31 2020 10:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37955 * 120.07568 * 2 1 4 4 C 1.38368 * 120.14540 * 180.27495 * 3 2 1 5 5 C 1.38353 * 120.28773 * 359.74194 * 4 3 2 6 6 C 1.37960 * 120.14957 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.07092 * 180.02562 * 6 5 4 8 8 C 1.39570 * 119.85206 * 359.97438 * 6 5 4 9 9 C 1.47846 * 120.14225 * 179.97438 * 8 6 5 10 10 O 1.21553 * 119.99992 * 90.00633 * 9 8 6 11 11 N 1.34776 * 120.00021 * 269.99899 * 9 8 6 12 12 C 1.46504 * 119.99737 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.55947 * 32.10438 * 12 11 9 14 14 C 1.54218 * 110.49397 * 269.09473 * 12 11 9 15 15 C 1.55845 * 103.56407 * 241.50488 * 14 12 11 16 16 H 1.09010 * 116.12346 * 159.06439 * 15 14 12 17 17 C 1.55846 * 105.06869 * 288.09071 * 15 14 12 18 18 C 1.54852 * 103.44066 * 71.82554 * 17 15 14 19 19 C 1.55842 * 110.62296 * 155.00283 * 12 11 9 20 20 H 1.09000 * 116.13291 * 319.33744 * 19 12 11 21 21 N 1.50232 * 101.04985 * 32.85806 * 15 14 12 22 22 C 1.36943 * 130.84102 * 125.99175 * 21 15 14 23 23 H 1.08002 * 119.99788 * 180.02562 * 22 21 15 24 24 C 1.38811 * 119.99622 * 0.30184 * 22 21 15 25 25 N 1.31614 * 120.00467 * 359.72375 * 24 22 21 26 26 Si 1.86801 * 119.99700 * 179.72266 * 24 22 21 27 27 H 1.48504 * 109.47306 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47021 * 119.99661 * 26 24 22 29 29 H 1.48501 * 109.47039 * 240.00078 * 26 24 22 30 30 H 1.09005 * 109.47678 * 270.21687 * 1 2 3 31 31 H 1.09000 * 109.47216 * 30.21363 * 1 2 3 32 32 H 1.08999 * 109.47471 * 150.21058 * 1 2 3 33 33 H 1.08000 * 119.93267 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.85242 * 179.76099 * 4 3 2 35 35 H 1.08006 * 119.92381 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47446 * 269.97752 * 7 6 5 37 37 H 1.09000 * 109.47469 * 29.98092 * 7 6 5 38 38 H 1.09002 * 109.46590 * 149.97748 * 7 6 5 39 39 H 0.97001 * 119.99988 * 0.02562 * 11 9 8 40 40 H 1.09011 * 110.64106 * 122.94505 * 14 12 11 41 41 H 1.08998 * 110.50276 * 0.02562 * 14 12 11 42 42 H 1.08994 * 110.62828 * 190.31215 * 17 15 14 43 43 H 1.08993 * 110.62693 * 313.33554 * 17 15 14 44 44 H 1.09002 * 110.62335 * 118.49236 * 18 17 15 45 45 H 1.09004 * 110.62308 * 241.35165 * 18 17 15 46 46 H 0.96995 * 120.00147 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5820 1.1955 -0.0057 5 6 4.2812 0.0017 -0.0061 6 6 3.6020 -1.1991 -0.0013 7 6 4.3654 -2.4985 -0.0012 8 6 2.2064 -1.2079 0.0045 9 6 1.4720 -2.4911 0.0091 10 8 1.1744 -3.0172 1.0636 11 7 1.1324 -3.0773 -1.1560 12 6 0.4042 -4.3486 -1.1514 13 1 -0.2532 -4.4100 -0.2842 14 6 1.3891 -5.5351 -1.1765 15 6 1.0429 -6.2693 -2.5069 16 1 1.8193 -6.9176 -2.9134 17 6 -0.3342 -6.9510 -2.2469 18 6 -1.3258 -5.7618 -2.2234 19 6 -0.4087 -4.5203 -2.4698 20 1 -0.9110 -3.6282 -2.8438 21 7 0.6330 -5.1139 -3.3752 22 6 1.0766 -4.7196 -4.6094 23 1 0.6526 -3.8458 -5.0818 24 6 2.0671 -5.4463 -5.2556 25 7 2.5838 -6.5111 -4.6799 26 14 2.6667 -4.9129 -6.9424 27 1 1.9310 -3.6948 -7.3670 28 1 4.1206 -4.6171 -6.8802 29 1 2.4247 -6.0031 -7.9213 30 1 -0.3634 0.0039 1.0277 31 1 -0.3634 0.8881 -0.5171 32 1 -0.3634 -0.8918 -0.5105 33 1 1.6584 2.1292 0.0004 34 1 4.1184 2.1328 -0.0096 35 1 5.3612 0.0099 -0.0102 36 1 4.5457 -2.8141 -1.0288 37 1 5.3187 -2.3598 0.5088 38 1 3.7840 -3.2613 0.5166 39 1 1.3701 -2.6576 -1.9976 40 1 1.2229 -6.1907 -0.3216 41 1 2.4183 -5.1766 -1.1920 42 1 -0.5802 -7.6401 -3.0547 43 1 -0.3317 -7.4679 -1.2873 44 1 -2.0635 -5.8613 -3.0197 45 1 -1.8171 -5.6907 -1.2530 46 1 3.2762 -7.0187 -5.1313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097898391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:37 Heat of formation + Delta-G solvation = 22.172985 kcal Electronic energy + Delta-G solvation = -27110.298571 eV Core-core repulsion = 23579.370484 eV Total energy + Delta-G solvation = -3530.928087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34682 -39.18918 -37.79245 -33.74392 -33.61769 -32.57412 -31.97484 -29.13444 -28.92573 -28.08749 -27.19202 -26.68094 -24.27976 -23.36041 -21.20093 -20.73327 -19.85783 -19.75010 -18.69179 -17.33639 -17.00289 -16.05224 -15.83599 -15.49268 -14.86224 -14.51569 -14.04085 -13.97132 -13.77158 -13.56481 -13.31033 -13.15566 -13.02823 -12.83779 -12.68332 -12.05441 -11.93666 -11.82974 -11.63465 -11.41521 -11.28905 -11.12573 -11.04549 -10.95249 -10.93410 -10.52870 -10.36318 -10.09874 -9.92968 -9.73748 -9.24592 -9.16381 -8.98821 -8.75657 -8.61779 -8.46819 -6.96721 -5.76803 -3.15772 1.15604 1.31586 2.92383 3.34282 3.39913 3.42322 3.51312 3.75011 4.38741 4.70913 4.76198 4.86079 5.01030 5.11090 5.20977 5.33899 5.35465 5.48550 5.58014 5.58381 5.63470 5.70110 5.75644 5.78065 5.84613 5.86184 6.04418 6.05570 6.09544 6.13583 6.25030 6.30170 6.37285 6.40782 6.42892 6.49225 6.53715 6.60246 6.73428 6.81737 6.90042 6.94361 7.10696 7.31342 7.45898 7.77297 7.98990 8.15161 8.59428 9.05196 9.68412 10.49322 11.32224 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.004786 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.951312 B = 5849.563560 C = 6840.732235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.049 4.049 3 C -0.132 4.132 4 C -0.102 4.102 5 C -0.130 4.130 6 C -0.043 4.043 7 C -0.124 4.124 8 C -0.122 4.122 9 C 0.563 3.437 10 O -0.547 6.547 11 N -0.697 5.697 12 C 0.128 3.872 13 H 0.080 0.920 14 C -0.143 4.143 15 C 0.154 3.846 16 H 0.153 0.847 17 C -0.139 4.139 18 C -0.128 4.128 19 C 0.125 3.875 20 H 0.088 0.912 21 N -0.590 5.590 22 C -0.213 4.213 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.919 5.919 26 Si 0.913 3.087 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.404 0.596 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 11.264 8.495 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.050 4.050 3 C -0.150 4.150 4 C -0.120 4.120 5 C -0.148 4.148 6 C -0.043 4.043 7 C -0.181 4.181 8 C -0.125 4.125 9 C 0.348 3.652 10 O -0.425 6.425 11 N -0.346 5.346 12 C 0.022 3.978 13 H 0.098 0.902 14 C -0.183 4.183 15 C 0.047 3.953 16 H 0.170 0.830 17 C -0.178 4.178 18 C -0.168 4.168 19 C 0.017 3.983 20 H 0.106 0.894 21 N -0.311 5.311 22 C -0.341 4.341 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.567 5.567 26 Si 0.744 3.256 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.239 0.761 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.825 10.836 8.932 14.067 hybrid contribution 0.476 0.520 -1.248 1.434 sum -0.349 11.357 7.684 13.717 Atomic orbital electron populations 1.20868 0.90829 1.03165 1.02826 1.19869 0.96059 0.91760 0.97266 1.20905 0.94260 0.97147 1.02692 1.21201 0.94199 0.97961 0.98606 1.20944 0.99893 0.91639 1.02356 1.19927 0.91976 0.96016 0.96398 1.20915 0.99781 0.94033 1.03362 1.19802 0.93571 0.93415 1.05737 1.18202 0.78650 0.83943 0.84385 1.90758 1.55291 1.65225 1.31245 1.46104 1.56687 1.23777 1.07995 1.22544 0.93825 0.82324 0.99110 0.90208 1.23343 0.98680 0.96770 0.99525 1.23760 0.95162 0.89830 0.86517 0.82998 1.23063 0.98706 0.96866 0.99213 1.22959 0.97528 0.96896 0.99401 1.23254 0.90645 0.95233 0.89204 0.89438 1.46540 1.40325 1.28260 1.15979 1.19044 1.15352 1.08485 0.91236 0.90390 1.24684 0.99346 0.97704 0.98776 1.69464 1.30464 1.19067 1.37670 0.86019 0.78301 0.77612 0.83659 1.20614 1.21839 1.21808 0.90690 0.91074 0.91195 0.85760 0.85895 0.85673 0.90091 0.91162 0.91014 0.76099 0.92813 0.92183 0.92634 0.93335 0.92459 0.93049 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.62 36.00 0.35 -1.07 16 2 C -0.05 -0.65 5.91 -104.23 -0.62 -1.27 16 3 C -0.13 -1.49 9.69 -39.64 -0.38 -1.87 16 4 C -0.10 -1.09 10.04 -39.49 -0.40 -1.49 16 5 C -0.13 -1.55 9.69 -39.64 -0.38 -1.94 16 6 C -0.04 -0.61 5.91 -104.23 -0.62 -1.23 16 7 C -0.12 -1.74 9.62 36.01 0.35 -1.39 16 8 C -0.12 -1.89 5.63 -104.97 -0.59 -2.48 16 9 C 0.56 9.92 4.19 -12.33 -0.05 9.87 16 10 O -0.55 -11.29 16.75 5.32 0.09 -11.20 16 11 N -0.70 -12.23 5.05 -52.66 -0.27 -12.49 16 12 C 0.13 2.38 2.79 -65.77 -0.18 2.19 16 13 H 0.08 1.49 7.24 -51.93 -0.38 1.12 16 14 C -0.14 -2.88 6.20 -24.58 -0.15 -3.04 16 15 C 0.15 3.45 4.72 -62.80 -0.30 3.15 16 16 H 0.15 3.92 5.52 -51.92 -0.29 3.63 16 17 C -0.14 -2.72 6.44 -24.24 -0.16 -2.88 16 18 C -0.13 -2.30 6.46 -23.98 -0.15 -2.45 16 19 C 0.13 2.41 5.08 -62.54 -0.32 2.09 16 20 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 21 N -0.59 -13.73 2.98 -145.54 -0.43 -14.16 16 22 C -0.21 -5.49 10.59 -15.06 -0.16 -5.65 16 23 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 25 N -0.92 -25.39 10.46 55.49 0.58 -24.81 16 26 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 32 H 0.07 0.91 7.08 -51.93 -0.37 0.54 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.07 1.15 7.08 -51.93 -0.37 0.78 16 39 H 0.40 7.12 8.64 -40.82 -0.35 6.77 16 40 H 0.05 1.02 7.82 -51.92 -0.41 0.61 16 41 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.81 7.84 -51.93 -0.41 0.41 16 46 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -29.57 368.38 -10.52 -40.09 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.15 Total: 10.61 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.86 Total: -9.80 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.12 Total: -51.46 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.57 -10.52 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097898391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.261 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds