Wall clock time and date at job start Tue Mar 31 2020 10:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37955 * 120.07568 * 2 1 4 4 C 1.38368 * 120.14540 * 180.27495 * 3 2 1 5 5 C 1.38353 * 120.28773 * 359.74194 * 4 3 2 6 6 C 1.37960 * 120.14957 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.07092 * 180.02562 * 6 5 4 8 8 C 1.39570 * 119.85206 * 359.97438 * 6 5 4 9 9 C 1.47846 * 120.14225 * 179.97438 * 8 6 5 10 10 O 1.21553 * 119.99992 * 90.00633 * 9 8 6 11 11 N 1.34776 * 120.00021 * 269.99899 * 9 8 6 12 12 C 1.46504 * 119.99737 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.55947 * 32.10438 * 12 11 9 14 14 C 1.54218 * 110.49397 * 269.09473 * 12 11 9 15 15 C 1.55845 * 103.56407 * 241.50488 * 14 12 11 16 16 H 1.09010 * 116.12346 * 159.06439 * 15 14 12 17 17 C 1.55846 * 105.06869 * 288.09071 * 15 14 12 18 18 C 1.54852 * 103.44066 * 71.82554 * 17 15 14 19 19 C 1.55842 * 110.62296 * 155.00283 * 12 11 9 20 20 H 1.09000 * 116.13291 * 319.33744 * 19 12 11 21 21 N 1.50232 * 101.04985 * 32.85806 * 15 14 12 22 22 C 1.36943 * 130.84102 * 125.99175 * 21 15 14 23 23 H 1.08002 * 119.99788 * 180.02562 * 22 21 15 24 24 C 1.38811 * 119.99622 * 0.30184 * 22 21 15 25 25 N 1.31614 * 120.00467 * 359.72375 * 24 22 21 26 26 Si 1.86801 * 119.99700 * 179.72266 * 24 22 21 27 27 H 1.48504 * 109.47306 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47021 * 119.99661 * 26 24 22 29 29 H 1.48501 * 109.47039 * 240.00078 * 26 24 22 30 30 H 1.09005 * 109.47678 * 270.21687 * 1 2 3 31 31 H 1.09000 * 109.47216 * 30.21363 * 1 2 3 32 32 H 1.08999 * 109.47471 * 150.21058 * 1 2 3 33 33 H 1.08000 * 119.93267 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.85242 * 179.76099 * 4 3 2 35 35 H 1.08006 * 119.92381 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47446 * 269.97752 * 7 6 5 37 37 H 1.09000 * 109.47469 * 29.98092 * 7 6 5 38 38 H 1.09002 * 109.46590 * 149.97748 * 7 6 5 39 39 H 0.97001 * 119.99988 * 0.02562 * 11 9 8 40 40 H 1.09011 * 110.64106 * 122.94505 * 14 12 11 41 41 H 1.08998 * 110.50276 * 0.02562 * 14 12 11 42 42 H 1.08994 * 110.62828 * 190.31215 * 17 15 14 43 43 H 1.08993 * 110.62693 * 313.33554 * 17 15 14 44 44 H 1.09002 * 110.62335 * 118.49236 * 18 17 15 45 45 H 1.09004 * 110.62308 * 241.35165 * 18 17 15 46 46 H 0.96995 * 120.00147 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5820 1.1955 -0.0057 5 6 4.2812 0.0017 -0.0061 6 6 3.6020 -1.1991 -0.0013 7 6 4.3654 -2.4985 -0.0012 8 6 2.2064 -1.2079 0.0045 9 6 1.4720 -2.4911 0.0091 10 8 1.1744 -3.0172 1.0636 11 7 1.1324 -3.0773 -1.1560 12 6 0.4042 -4.3486 -1.1514 13 1 -0.2532 -4.4100 -0.2842 14 6 1.3891 -5.5351 -1.1765 15 6 1.0429 -6.2693 -2.5069 16 1 1.8193 -6.9176 -2.9134 17 6 -0.3342 -6.9510 -2.2469 18 6 -1.3258 -5.7618 -2.2234 19 6 -0.4087 -4.5203 -2.4698 20 1 -0.9110 -3.6282 -2.8438 21 7 0.6330 -5.1139 -3.3752 22 6 1.0766 -4.7196 -4.6094 23 1 0.6526 -3.8458 -5.0818 24 6 2.0671 -5.4463 -5.2556 25 7 2.5838 -6.5111 -4.6799 26 14 2.6667 -4.9129 -6.9424 27 1 1.9310 -3.6948 -7.3670 28 1 4.1206 -4.6171 -6.8802 29 1 2.4247 -6.0031 -7.9213 30 1 -0.3634 0.0039 1.0277 31 1 -0.3634 0.8881 -0.5171 32 1 -0.3634 -0.8918 -0.5105 33 1 1.6584 2.1292 0.0004 34 1 4.1184 2.1328 -0.0096 35 1 5.3612 0.0099 -0.0102 36 1 4.5457 -2.8141 -1.0288 37 1 5.3187 -2.3598 0.5088 38 1 3.7840 -3.2613 0.5166 39 1 1.3701 -2.6576 -1.9976 40 1 1.2229 -6.1907 -0.3216 41 1 2.4183 -5.1766 -1.1920 42 1 -0.5802 -7.6401 -3.0547 43 1 -0.3317 -7.4679 -1.2873 44 1 -2.0635 -5.8613 -3.0197 45 1 -1.8171 -5.6907 -1.2530 46 1 3.2762 -7.0187 -5.1313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097898391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:36 Heat of formation + Delta-G solvation = 6.489035 kcal Electronic energy + Delta-G solvation = -27110.978678 eV Core-core repulsion = 23579.370484 eV Total energy + Delta-G solvation = -3531.608194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65085 -40.59456 -39.12062 -35.30100 -34.59650 -34.41904 -33.00450 -30.97977 -30.47431 -29.53326 -28.42990 -27.61611 -26.15100 -24.56553 -22.60659 -21.70428 -21.54821 -21.14812 -20.30476 -18.85996 -18.55483 -17.44565 -17.01741 -16.78124 -16.50622 -15.85825 -15.70715 -15.19164 -15.02227 -14.94944 -14.67671 -14.31832 -14.18474 -13.93288 -13.72916 -13.69791 -13.63264 -12.95155 -12.91402 -12.86711 -12.78872 -12.71926 -12.58468 -12.41401 -12.11124 -12.00138 -11.94332 -11.88537 -11.71062 -11.26751 -10.96180 -10.95663 -10.67586 -10.00578 -9.76470 -9.55976 -8.86938 -7.75807 -5.15456 0.17032 0.37444 1.47868 1.49094 1.55101 1.57680 2.26048 2.49948 2.71024 3.37398 3.44043 3.66858 3.81431 3.82982 4.00005 4.04126 4.08729 4.25807 4.34789 4.39365 4.44581 4.46860 4.51660 4.59909 4.61522 4.67203 4.69758 4.72764 4.82040 4.83446 4.87385 4.89678 5.07290 5.10447 5.15741 5.18431 5.24448 5.37478 5.46525 5.49331 5.51836 5.55616 5.58245 5.69301 5.89809 6.00140 6.27188 6.55968 7.06327 7.18618 7.72641 8.58371 9.31660 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.004786 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.951312 B = 5849.563560 C = 6840.732235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.061 4.061 3 C -0.129 4.129 4 C -0.093 4.093 5 C -0.132 4.132 6 C -0.064 4.064 7 C -0.118 4.118 8 C -0.153 4.153 9 C 0.570 3.430 10 O -0.582 6.582 11 N -0.694 5.694 12 C 0.139 3.861 13 H 0.086 0.914 14 C -0.133 4.133 15 C 0.141 3.859 16 H 0.117 0.883 17 C -0.132 4.132 18 C -0.119 4.119 19 C 0.128 3.872 20 H 0.102 0.898 21 N -0.609 5.609 22 C -0.212 4.212 23 H 0.084 0.916 24 C -0.065 4.065 25 N -0.947 5.947 26 Si 0.971 3.029 27 H -0.267 1.267 28 H -0.298 1.298 29 H -0.299 1.299 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.404 0.596 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 14.287 8.948 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.061 4.061 3 C -0.146 4.146 4 C -0.111 4.111 5 C -0.150 4.150 6 C -0.065 4.065 7 C -0.175 4.175 8 C -0.156 4.156 9 C 0.358 3.642 10 O -0.463 6.463 11 N -0.342 5.342 12 C 0.032 3.968 13 H 0.104 0.896 14 C -0.173 4.173 15 C 0.034 3.966 16 H 0.134 0.866 17 C -0.171 4.171 18 C -0.158 4.158 19 C 0.020 3.980 20 H 0.120 0.880 21 N -0.330 5.330 22 C -0.341 4.341 23 H 0.102 0.898 24 C -0.258 4.258 25 N -0.597 5.597 26 Si 0.801 3.199 27 H -0.191 1.191 28 H -0.226 1.226 29 H -0.226 1.226 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.166 0.834 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.238 0.762 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.503 13.884 9.393 16.830 hybrid contribution 0.696 -0.361 -1.332 1.546 sum -0.807 13.523 8.061 15.764 Atomic orbital electron populations 1.20890 0.90054 1.03578 1.03003 1.20138 0.96874 0.91777 0.97350 1.21312 0.94808 0.97446 1.01080 1.21669 0.94238 0.98904 0.96301 1.21260 1.01203 0.91099 1.01443 1.20061 0.91746 0.96873 0.97819 1.20835 1.00588 0.93651 1.02428 1.19784 0.94159 0.92905 1.08732 1.18559 0.77734 0.84452 0.83502 1.90719 1.56812 1.66488 1.32323 1.46062 1.56603 1.23367 1.08167 1.22370 0.93276 0.82153 0.98965 0.89597 1.23204 0.97732 0.97527 0.98851 1.23590 0.95923 0.89934 0.87131 0.86614 1.22960 0.97237 0.97229 0.99720 1.22911 0.96839 0.94896 1.01200 1.23445 0.90039 0.96197 0.88277 0.88025 1.46709 1.41454 1.28982 1.15859 1.19367 1.14615 1.08075 0.92053 0.89829 1.25385 1.00288 0.98272 1.01838 1.69712 1.31063 1.20230 1.38670 0.85101 0.77327 0.77347 0.80116 1.19126 1.22566 1.22612 0.90621 0.88371 0.93003 0.82580 0.82246 0.83351 0.91362 0.88742 0.93905 0.76159 0.91655 0.94679 0.94232 0.91155 0.92082 0.90102 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.62 71.23 0.69 -1.90 16 2 C -0.06 -1.52 5.91 -19.61 -0.12 -1.63 16 3 C -0.13 -2.44 9.69 22.23 0.22 -2.23 16 4 C -0.09 -1.64 10.04 22.33 0.22 -1.41 16 5 C -0.13 -2.82 9.69 22.23 0.22 -2.60 16 6 C -0.06 -1.81 5.91 -19.61 -0.12 -1.92 16 7 C -0.12 -3.40 9.62 71.24 0.69 -2.72 16 8 C -0.15 -4.69 5.63 -20.09 -0.11 -4.81 16 9 C 0.57 20.45 4.19 86.79 0.36 20.81 16 10 O -0.58 -24.57 16.75 -3.88 -0.07 -24.63 16 11 N -0.69 -24.68 5.05 -438.80 -2.21 -26.89 16 12 C 0.14 5.12 2.79 46.39 0.13 5.25 16 13 H 0.09 3.12 7.24 -2.39 -0.02 3.10 16 14 C -0.13 -5.48 6.20 31.99 0.20 -5.28 16 15 C 0.14 6.47 4.72 46.23 0.22 6.69 16 16 H 0.12 6.29 5.52 -2.38 -0.01 6.27 16 17 C -0.13 -5.11 6.44 32.21 0.21 -4.90 16 18 C -0.12 -4.04 6.46 32.38 0.21 -3.83 16 19 C 0.13 4.77 5.08 46.39 0.24 5.01 16 20 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 21 N -0.61 -28.54 2.98 -614.37 -1.83 -30.37 16 22 C -0.21 -11.02 10.59 84.03 0.89 -10.13 16 23 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 25 N -0.95 -54.39 10.46 21.65 0.23 -54.17 16 26 Si 0.97 44.39 29.55 68.60 2.03 46.42 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 30 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.10 1.55 8.09 -2.39 -0.02 1.53 16 32 H 0.05 1.30 7.08 -2.39 -0.02 1.29 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 38 H 0.04 1.44 7.08 -2.39 -0.02 1.43 16 39 H 0.40 14.45 8.64 -92.71 -0.80 13.65 16 40 H 0.06 2.50 7.82 -2.38 -0.02 2.48 16 41 H 0.03 1.59 7.96 -2.39 -0.02 1.57 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 2.38 7.82 -2.39 -0.02 2.36 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.08 2.31 7.84 -2.38 -0.02 2.29 16 46 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -66.29 368.38 2.92 -63.37 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.18 Total: 34.96 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 4.60 Total: -8.69 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -3.82 Total: -111.43 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.63 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.29 2.92 -63.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097898391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.856 kcal (2) G-P(sol) polarization free energy of solvation -66.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds