Wall clock time and date at job start Tue Mar 31 2020 10:46:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.38384 * 119.92818 * 2 1
4 4 C 1.38336 * 120.29125 * 179.97438 * 3 2 1
5 5 C 1.37975 * 120.14648 * 359.97438 * 4 3 2
6 6 C 1.50700 * 120.07315 * 179.72023 * 5 4 3
7 7 C 1.39552 * 119.85320 * 359.97438 * 5 4 3
8 8 C 1.47849 * 120.14632 * 179.97438 * 7 5 4
9 9 O 1.21554 * 119.99754 * 6.29735 * 8 7 5
10 10 N 1.34779 * 120.00191 * 186.29224 * 8 7 5
11 11 C 1.46494 * 119.99897 * 180.02562 * 10 8 7
12 12 H 1.09004 * 110.56156 * 32.10296 * 11 10 8
13 13 C 1.54853 * 110.62739 * 269.02731 * 11 10 8
14 14 C 1.55846 * 103.44656 * 241.51036 * 13 11 10
15 15 H 1.08999 * 115.55942 * 158.81135 * 14 13 11
16 16 C 1.55838 * 105.06393 * 288.17480 * 14 13 11
17 17 C 1.54848 * 103.44721 * 71.82801 * 16 14 13
18 18 C 1.55848 * 110.62545 * 155.00554 * 11 10 8
19 19 H 1.09001 * 115.55735 * 319.67511 * 18 11 10
20 20 N 1.50225 * 101.05263 * 85.55243 * 18 11 10
21 21 C 1.36946 * 130.83795 * 233.94947 * 20 18 11
22 22 H 1.07995 * 119.99899 * 359.97438 * 21 20 18
23 23 C 1.38810 * 119.99893 * 180.02562 * 21 20 18
24 24 N 1.31613 * 120.00364 * 359.97438 * 23 21 20
25 25 Si 1.86807 * 119.99673 * 179.97438 * 23 21 20
26 26 H 1.48502 * 109.47055 * 89.99898 * 25 23 21
27 27 H 1.48498 * 109.46847 * 209.99543 * 25 23 21
28 28 H 1.48497 * 109.47250 * 329.99789 * 25 23 21
29 29 C 1.37937 * 119.92835 * 179.97438 * 2 1 3
30 30 H 1.09008 * 109.47218 * 89.99998 * 1 2 3
31 31 H 1.09000 * 109.47653 * 209.99982 * 1 2 3
32 32 H 1.09005 * 109.47497 * 330.00156 * 1 2 3
33 33 H 1.07998 * 119.85230 * 359.97438 * 3 2 1
34 34 H 1.07997 * 119.92704 * 179.97438 * 4 3 2
35 35 H 1.09001 * 109.46977 * 96.59627 * 6 5 4
36 36 H 1.09000 * 109.47570 * 216.59200 * 6 5 4
37 37 H 1.08997 * 109.47253 * 336.59493 * 6 5 4
38 38 H 0.97000 * 119.99875 * 0.02562 * 10 8 7
39 39 H 1.09001 * 110.62370 * 0.02562 * 13 11 10
40 40 H 1.08999 * 110.62547 * 123.02169 * 13 11 10
41 41 H 1.09004 * 110.62373 * 190.31289 * 16 14 13
42 42 H 1.09001 * 110.62902 * 313.17566 * 16 14 13
43 43 H 1.09004 * 110.62503 * 241.51250 * 17 16 14
44 44 H 1.08997 * 110.63259 * 118.48434 * 17 16 14
45 45 H 0.97004 * 120.00466 * 180.02562 * 24 23 21
46 46 H 1.08006 * 120.07173 * 0.02562 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1974 1.1993 0.0000
4 6 3.5807 1.2081 0.0005
5 6 4.2812 0.0194 0.0016
6 6 5.7881 0.0308 -0.0042
7 6 3.5911 -1.1936 0.0027
8 6 4.3352 -2.4712 0.0033
9 8 5.5452 -2.4697 0.1183
10 7 3.6717 -3.6375 -0.1236
11 6 4.4090 -4.9034 -0.1225
12 1 5.2929 -4.8311 0.5114
13 6 4.7997 -5.3085 -1.5651
14 6 4.0650 -6.6674 -1.7715
15 1 3.9003 -6.9602 -2.8084
16 6 4.8426 -7.6868 -0.8857
17 6 4.4519 -7.2819 0.5569
18 6 3.4914 -6.0727 0.3463
19 1 2.8216 -5.8418 1.1746
20 7 2.8278 -6.4540 -0.9464
21 6 1.5028 -6.5713 -1.2722
22 1 0.7445 -6.3735 -0.5292
23 6 1.1347 -6.9455 -2.5573
24 7 2.0589 -7.1871 -3.4626
25 14 -0.6726 -7.1063 -3.0015
26 1 -1.1767 -5.8030 -3.5040
27 1 -0.8330 -8.1390 -4.0565
28 1 -1.4449 -7.5047 -1.7973
29 6 2.1951 -1.1954 0.0005
30 1 -0.3634 0.0000 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3634 0.8900 0.5138
33 1 1.6538 2.1325 -0.0004
34 1 4.1135 2.1474 0.0001
35 1 6.1562 -0.0813 1.0157
36 1 6.1555 -0.7934 -0.6156
37 1 6.1427 0.9753 -0.4167
38 1 2.7061 -3.6387 -0.2157
39 1 4.4452 -4.5672 -2.2814
40 1 5.8786 -5.4388 -1.6485
41 1 4.5196 -8.7057 -1.0993
42 1 5.9173 -7.5862 -1.0377
43 1 5.3330 -6.9784 1.1224
44 1 3.9351 -8.0998 1.0588
45 1 1.8016 -7.4482 -4.3607
46 1 1.6551 -2.1308 0.0005
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001098279103.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:46:41
Heat of formation + Delta-G solvation = 26.580634 kcal
Electronic energy + Delta-G solvation = -26746.929772 eV
Core-core repulsion = 23216.192815 eV
Total energy + Delta-G solvation = -3530.736957 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.31780 -39.19075 -37.86971 -34.23521 -33.40081 -32.58152 -31.22119 -29.27122
-29.12199 -28.72391 -27.58822 -25.04584 -24.27093 -23.68753 -21.84164 -20.67641
-19.88474 -19.62221 -18.62939 -17.11253 -16.98188 -16.04558 -15.58082 -15.15407
-14.83521 -14.80339 -14.56916 -13.99011 -13.86466 -13.65545 -13.34845 -13.01305
-12.87273 -12.82335 -12.47886 -12.05439 -11.85654 -11.78185 -11.63157 -11.53800
-11.23205 -11.13011 -11.07532 -10.95302 -10.92165 -10.49713 -10.36139 -10.11946
-9.91001 -9.53498 -9.21748 -9.09932 -9.00363 -8.97017 -8.56414 -8.33553
-6.96673 -5.76588 -3.15813 0.93480 1.31987 3.08726 3.33966 3.39161
3.41531 3.61231 3.91994 4.38570 4.70844 4.74769 4.86711 5.01054
5.11889 5.14795 5.33278 5.42475 5.47753 5.54417 5.63435 5.64849
5.69731 5.73207 5.87200 5.89846 5.92689 6.00643 6.05337 6.11848
6.14557 6.23263 6.29766 6.34493 6.42232 6.48207 6.49049 6.60483
6.64763 6.76039 6.82684 6.90967 6.95616 7.13861 7.32848 7.45170
7.77750 8.01666 8.15635 8.62906 9.05018 9.68401 10.49682 11.32373
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.012197 B = 0.004708 C = 0.003670
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2295.074710 B = 5945.430802 C = 7627.659477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.102 4.102
3 C -0.096 4.096
4 C -0.132 4.132
5 C -0.032 4.032
6 C -0.118 4.118
7 C -0.129 4.129
8 C 0.552 3.448
9 O -0.544 6.544
10 N -0.700 5.700
11 C 0.128 3.872
12 H 0.081 0.919
13 C -0.143 4.143
14 C 0.153 3.847
15 H 0.153 0.847
16 C -0.138 4.138
17 C -0.127 4.127
18 C 0.125 3.875
19 H 0.087 0.913
20 N -0.591 5.591
21 C -0.215 4.215
22 H 0.078 0.922
23 C -0.009 4.009
24 N -0.919 5.919
25 Si 0.914 3.086
26 H -0.290 1.290
27 H -0.290 1.290
28 H -0.282 1.282
29 C -0.080 4.080
30 H 0.071 0.929
31 H 0.068 0.932
32 H 0.065 0.935
33 H 0.123 0.877
34 H 0.125 0.875
35 H 0.072 0.928
36 H 0.097 0.903
37 H 0.052 0.948
38 H 0.401 0.599
39 H 0.059 0.941
40 H 0.053 0.947
41 H 0.055 0.945
42 H 0.048 0.952
43 H 0.052 0.948
44 H 0.057 0.943
45 H 0.254 0.746
46 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.713 12.931 7.193 14.896
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.102 4.102
3 C -0.115 4.115
4 C -0.150 4.150
5 C -0.033 4.033
6 C -0.175 4.175
7 C -0.132 4.132
8 C 0.339 3.661
9 O -0.425 6.425
10 N -0.349 5.349
11 C 0.022 3.978
12 H 0.099 0.901
13 C -0.183 4.183
14 C 0.047 3.953
15 H 0.170 0.830
16 C -0.177 4.177
17 C -0.167 4.167
18 C 0.016 3.984
19 H 0.105 0.895
20 N -0.312 5.312
21 C -0.343 4.343
22 H 0.096 0.904
23 C -0.205 4.205
24 N -0.566 5.566
25 Si 0.744 3.256
26 H -0.217 1.217
27 H -0.217 1.217
28 H -0.208 1.208
29 C -0.099 4.099
30 H 0.090 0.910
31 H 0.087 0.913
32 H 0.084 0.916
33 H 0.141 0.859
34 H 0.143 0.857
35 H 0.091 0.909
36 H 0.115 0.885
37 H 0.071 0.929
38 H 0.237 0.763
39 H 0.078 0.922
40 H 0.072 0.928
41 H 0.074 0.926
42 H 0.067 0.933
43 H 0.070 0.930
44 H 0.076 0.924
45 H 0.065 0.935
46 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 2.290 12.808 7.060 14.803
hybrid contribution -1.475 -0.054 -0.287 1.503
sum 0.815 12.754 6.773 14.464
Atomic orbital electron populations
1.20791 0.90830 1.02824 1.02606 1.19822 0.96320 0.92831 1.01250
1.21165 0.94160 0.97492 0.98658 1.20996 0.94043 0.97443 1.02471
1.20031 0.96850 0.91477 0.94917 1.21053 0.90167 1.02747 1.03491
1.19921 0.93497 0.93631 1.06182 1.18235 0.87171 0.83749 0.76933
1.90669 1.13669 1.87162 1.50963 1.45976 1.11270 1.05594 1.72055
1.22663 0.94730 0.82361 0.98033 0.90106 1.23464 0.98656 1.00967
0.95250 1.23762 0.82929 0.89623 0.98997 0.83013 1.23045 0.98186
1.00743 0.95769 1.22865 0.98077 0.98412 0.97339 1.23174 0.92343
0.92118 0.90749 0.89495 1.46539 1.01346 1.77952 1.05347 1.18992
0.80620 1.39374 0.95352 0.90440 1.24692 0.97602 1.02176 0.96003
1.69458 1.30534 1.52913 1.03730 0.86088 0.84185 0.77412 0.77876
1.21706 1.21673 1.20787 1.21283 0.92973 0.98271 0.97362 0.91000
0.91251 0.91645 0.85912 0.85659 0.90943 0.88497 0.92861 0.76285
0.92247 0.92795 0.92648 0.93304 0.92972 0.92442 0.93522 0.85355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16
2 C -0.10 -1.21 5.87 -104.68 -0.61 -1.82 16
3 C -0.10 -1.05 9.69 -39.49 -0.38 -1.43 16
4 C -0.13 -1.51 9.66 -39.64 -0.38 -1.90 16
5 C -0.03 -0.44 5.91 -104.23 -0.62 -1.06 16
6 C -0.12 -1.57 8.73 36.01 0.31 -1.26 16
7 C -0.13 -1.99 5.87 -104.97 -0.62 -2.60 16
8 C 0.55 9.73 7.70 -12.33 -0.09 9.64 16
9 O -0.54 -10.62 13.00 5.32 0.07 -10.55 16
10 N -0.70 -12.41 5.02 -52.33 -0.26 -12.67 16
11 C 0.13 2.41 2.80 -65.44 -0.18 2.23 16
12 H 0.08 1.52 7.23 -51.93 -0.38 1.14 16
13 C -0.14 -2.94 6.23 -24.23 -0.15 -3.09 16
14 C 0.15 3.48 4.72 -62.80 -0.30 3.18 16
15 H 0.15 3.95 5.52 -51.93 -0.29 3.67 16
16 C -0.14 -2.72 6.44 -24.24 -0.16 -2.87 16
17 C -0.13 -2.30 6.44 -24.23 -0.16 -2.45 16
18 C 0.12 2.42 5.06 -62.80 -0.32 2.10 16
19 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16
20 N -0.59 -13.84 2.99 -145.82 -0.44 -14.28 16
21 C -0.22 -5.55 10.59 -15.06 -0.16 -5.71 16
22 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16
23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16
24 N -0.92 -25.55 10.46 55.49 0.58 -24.97 16
25 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16
26 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16
27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
29 C -0.08 -1.10 9.17 -39.19 -0.36 -1.46 16
30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16
31 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16
32 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16
33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16
34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16
35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
36 H 0.10 1.52 5.85 -51.93 -0.30 1.22 16
37 H 0.05 0.57 8.04 -51.93 -0.42 0.15 16
38 H 0.40 6.94 6.73 -40.82 -0.27 6.67 16
39 H 0.06 1.33 7.98 -51.93 -0.41 0.91 16
40 H 0.05 1.03 7.82 -51.93 -0.41 0.63 16
41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16
42 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16
43 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16
44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16
46 H 0.13 1.69 6.46 -52.48 -0.34 1.35 16
LS Contribution 363.14 15.07 5.47 5.47
Total: -1.00 -29.13 363.14 -10.48 -39.62
By element:
Atomic # 1 Polarization: 17.76 SS G_CDS: -6.97 Total: 10.79 kcal
Atomic # 6 Polarization: -5.64 SS G_CDS: -3.91 Total: -9.55 kcal
Atomic # 7 Polarization: -51.80 SS G_CDS: -0.12 Total: -51.92 kcal
Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -29.13 -10.48 -39.62 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098279103.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.198 kcal
(2) G-P(sol) polarization free energy of solvation -29.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.063 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.581 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds