Wall clock time and date at job start Tue Mar 31 2020 10:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38384 * 119.92818 * 2 1 4 4 C 1.38336 * 120.29125 * 179.97438 * 3 2 1 5 5 C 1.37975 * 120.14648 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.07315 * 179.72023 * 5 4 3 7 7 C 1.39552 * 119.85320 * 359.97438 * 5 4 3 8 8 C 1.47849 * 120.14632 * 179.97438 * 7 5 4 9 9 O 1.21554 * 119.99754 * 6.29735 * 8 7 5 10 10 N 1.34779 * 120.00191 * 186.29224 * 8 7 5 11 11 C 1.46494 * 119.99897 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.56156 * 32.10296 * 11 10 8 13 13 C 1.54853 * 110.62739 * 269.02731 * 11 10 8 14 14 C 1.55846 * 103.44656 * 241.51036 * 13 11 10 15 15 H 1.08999 * 115.55942 * 158.81135 * 14 13 11 16 16 C 1.55838 * 105.06393 * 288.17480 * 14 13 11 17 17 C 1.54848 * 103.44721 * 71.82801 * 16 14 13 18 18 C 1.55848 * 110.62545 * 155.00554 * 11 10 8 19 19 H 1.09001 * 115.55735 * 319.67511 * 18 11 10 20 20 N 1.50225 * 101.05263 * 85.55243 * 18 11 10 21 21 C 1.36946 * 130.83795 * 233.94947 * 20 18 11 22 22 H 1.07995 * 119.99899 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99893 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00364 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99673 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47055 * 89.99898 * 25 23 21 27 27 H 1.48498 * 109.46847 * 209.99543 * 25 23 21 28 28 H 1.48497 * 109.47250 * 329.99789 * 25 23 21 29 29 C 1.37937 * 119.92835 * 179.97438 * 2 1 3 30 30 H 1.09008 * 109.47218 * 89.99998 * 1 2 3 31 31 H 1.09000 * 109.47653 * 209.99982 * 1 2 3 32 32 H 1.09005 * 109.47497 * 330.00156 * 1 2 3 33 33 H 1.07998 * 119.85230 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.92704 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.46977 * 96.59627 * 6 5 4 36 36 H 1.09000 * 109.47570 * 216.59200 * 6 5 4 37 37 H 1.08997 * 109.47253 * 336.59493 * 6 5 4 38 38 H 0.97000 * 119.99875 * 0.02562 * 10 8 7 39 39 H 1.09001 * 110.62370 * 0.02562 * 13 11 10 40 40 H 1.08999 * 110.62547 * 123.02169 * 13 11 10 41 41 H 1.09004 * 110.62373 * 190.31289 * 16 14 13 42 42 H 1.09001 * 110.62902 * 313.17566 * 16 14 13 43 43 H 1.09004 * 110.62503 * 241.51250 * 17 16 14 44 44 H 1.08997 * 110.63259 * 118.48434 * 17 16 14 45 45 H 0.97004 * 120.00466 * 180.02562 * 24 23 21 46 46 H 1.08006 * 120.07173 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2812 0.0194 0.0016 6 6 5.7881 0.0308 -0.0042 7 6 3.5911 -1.1936 0.0027 8 6 4.3352 -2.4712 0.0033 9 8 5.5452 -2.4697 0.1183 10 7 3.6717 -3.6375 -0.1236 11 6 4.4090 -4.9034 -0.1225 12 1 5.2929 -4.8311 0.5114 13 6 4.7997 -5.3085 -1.5651 14 6 4.0650 -6.6674 -1.7715 15 1 3.9003 -6.9602 -2.8084 16 6 4.8426 -7.6868 -0.8857 17 6 4.4519 -7.2819 0.5569 18 6 3.4914 -6.0727 0.3463 19 1 2.8216 -5.8418 1.1746 20 7 2.8278 -6.4540 -0.9464 21 6 1.5028 -6.5713 -1.2722 22 1 0.7445 -6.3735 -0.5292 23 6 1.1347 -6.9455 -2.5573 24 7 2.0589 -7.1871 -3.4626 25 14 -0.6726 -7.1063 -3.0015 26 1 -1.1767 -5.8030 -3.5040 27 1 -0.8330 -8.1390 -4.0565 28 1 -1.4449 -7.5047 -1.7973 29 6 2.1951 -1.1954 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6538 2.1325 -0.0004 34 1 4.1135 2.1474 0.0001 35 1 6.1562 -0.0813 1.0157 36 1 6.1555 -0.7934 -0.6156 37 1 6.1427 0.9753 -0.4167 38 1 2.7061 -3.6387 -0.2157 39 1 4.4452 -4.5672 -2.2814 40 1 5.8786 -5.4388 -1.6485 41 1 4.5196 -8.7057 -1.0993 42 1 5.9173 -7.5862 -1.0377 43 1 5.3330 -6.9784 1.1224 44 1 3.9351 -8.0998 1.0588 45 1 1.8016 -7.4482 -4.3607 46 1 1.6551 -2.1308 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098279103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:41 Heat of formation + Delta-G solvation = 26.580634 kcal Electronic energy + Delta-G solvation = -26746.929772 eV Core-core repulsion = 23216.192815 eV Total energy + Delta-G solvation = -3530.736957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31780 -39.19075 -37.86971 -34.23521 -33.40081 -32.58152 -31.22119 -29.27122 -29.12199 -28.72391 -27.58822 -25.04584 -24.27093 -23.68753 -21.84164 -20.67641 -19.88474 -19.62221 -18.62939 -17.11253 -16.98188 -16.04558 -15.58082 -15.15407 -14.83521 -14.80339 -14.56916 -13.99011 -13.86466 -13.65545 -13.34845 -13.01305 -12.87273 -12.82335 -12.47886 -12.05439 -11.85654 -11.78185 -11.63157 -11.53800 -11.23205 -11.13011 -11.07532 -10.95302 -10.92165 -10.49713 -10.36139 -10.11946 -9.91001 -9.53498 -9.21748 -9.09932 -9.00363 -8.97017 -8.56414 -8.33553 -6.96673 -5.76588 -3.15813 0.93480 1.31987 3.08726 3.33966 3.39161 3.41531 3.61231 3.91994 4.38570 4.70844 4.74769 4.86711 5.01054 5.11889 5.14795 5.33278 5.42475 5.47753 5.54417 5.63435 5.64849 5.69731 5.73207 5.87200 5.89846 5.92689 6.00643 6.05337 6.11848 6.14557 6.23263 6.29766 6.34493 6.42232 6.48207 6.49049 6.60483 6.64763 6.76039 6.82684 6.90967 6.95616 7.13861 7.32848 7.45170 7.77750 8.01666 8.15635 8.62906 9.05018 9.68401 10.49682 11.32373 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.004708 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.074710 B = 5945.430802 C = 7627.659477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.096 4.096 4 C -0.132 4.132 5 C -0.032 4.032 6 C -0.118 4.118 7 C -0.129 4.129 8 C 0.552 3.448 9 O -0.544 6.544 10 N -0.700 5.700 11 C 0.128 3.872 12 H 0.081 0.919 13 C -0.143 4.143 14 C 0.153 3.847 15 H 0.153 0.847 16 C -0.138 4.138 17 C -0.127 4.127 18 C 0.125 3.875 19 H 0.087 0.913 20 N -0.591 5.591 21 C -0.215 4.215 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.282 1.282 29 C -0.080 4.080 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.401 0.599 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 12.931 7.193 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.102 4.102 3 C -0.115 4.115 4 C -0.150 4.150 5 C -0.033 4.033 6 C -0.175 4.175 7 C -0.132 4.132 8 C 0.339 3.661 9 O -0.425 6.425 10 N -0.349 5.349 11 C 0.022 3.978 12 H 0.099 0.901 13 C -0.183 4.183 14 C 0.047 3.953 15 H 0.170 0.830 16 C -0.177 4.177 17 C -0.167 4.167 18 C 0.016 3.984 19 H 0.105 0.895 20 N -0.312 5.312 21 C -0.343 4.343 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.566 5.566 25 Si 0.744 3.256 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.099 4.099 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.237 0.763 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.290 12.808 7.060 14.803 hybrid contribution -1.475 -0.054 -0.287 1.503 sum 0.815 12.754 6.773 14.464 Atomic orbital electron populations 1.20791 0.90830 1.02824 1.02606 1.19822 0.96320 0.92831 1.01250 1.21165 0.94160 0.97492 0.98658 1.20996 0.94043 0.97443 1.02471 1.20031 0.96850 0.91477 0.94917 1.21053 0.90167 1.02747 1.03491 1.19921 0.93497 0.93631 1.06182 1.18235 0.87171 0.83749 0.76933 1.90669 1.13669 1.87162 1.50963 1.45976 1.11270 1.05594 1.72055 1.22663 0.94730 0.82361 0.98033 0.90106 1.23464 0.98656 1.00967 0.95250 1.23762 0.82929 0.89623 0.98997 0.83013 1.23045 0.98186 1.00743 0.95769 1.22865 0.98077 0.98412 0.97339 1.23174 0.92343 0.92118 0.90749 0.89495 1.46539 1.01346 1.77952 1.05347 1.18992 0.80620 1.39374 0.95352 0.90440 1.24692 0.97602 1.02176 0.96003 1.69458 1.30534 1.52913 1.03730 0.86088 0.84185 0.77412 0.77876 1.21706 1.21673 1.20787 1.21283 0.92973 0.98271 0.97362 0.91000 0.91251 0.91645 0.85912 0.85659 0.90943 0.88497 0.92861 0.76285 0.92247 0.92795 0.92648 0.93304 0.92972 0.92442 0.93522 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16 2 C -0.10 -1.21 5.87 -104.68 -0.61 -1.82 16 3 C -0.10 -1.05 9.69 -39.49 -0.38 -1.43 16 4 C -0.13 -1.51 9.66 -39.64 -0.38 -1.90 16 5 C -0.03 -0.44 5.91 -104.23 -0.62 -1.06 16 6 C -0.12 -1.57 8.73 36.01 0.31 -1.26 16 7 C -0.13 -1.99 5.87 -104.97 -0.62 -2.60 16 8 C 0.55 9.73 7.70 -12.33 -0.09 9.64 16 9 O -0.54 -10.62 13.00 5.32 0.07 -10.55 16 10 N -0.70 -12.41 5.02 -52.33 -0.26 -12.67 16 11 C 0.13 2.41 2.80 -65.44 -0.18 2.23 16 12 H 0.08 1.52 7.23 -51.93 -0.38 1.14 16 13 C -0.14 -2.94 6.23 -24.23 -0.15 -3.09 16 14 C 0.15 3.48 4.72 -62.80 -0.30 3.18 16 15 H 0.15 3.95 5.52 -51.93 -0.29 3.67 16 16 C -0.14 -2.72 6.44 -24.24 -0.16 -2.87 16 17 C -0.13 -2.30 6.44 -24.23 -0.16 -2.45 16 18 C 0.12 2.42 5.06 -62.80 -0.32 2.10 16 19 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 20 N -0.59 -13.84 2.99 -145.82 -0.44 -14.28 16 21 C -0.22 -5.55 10.59 -15.06 -0.16 -5.71 16 22 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.92 -25.55 10.46 55.49 0.58 -24.97 16 25 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 C -0.08 -1.10 9.17 -39.19 -0.36 -1.46 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.52 5.85 -51.93 -0.30 1.22 16 37 H 0.05 0.57 8.04 -51.93 -0.42 0.15 16 38 H 0.40 6.94 6.73 -40.82 -0.27 6.67 16 39 H 0.06 1.33 7.98 -51.93 -0.41 0.91 16 40 H 0.05 1.03 7.82 -51.93 -0.41 0.63 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 43 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.13 1.69 6.46 -52.48 -0.34 1.35 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -29.13 363.14 -10.48 -39.62 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.97 Total: 10.79 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.91 Total: -9.55 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.12 Total: -51.92 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.13 -10.48 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098279103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.198 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds