Wall clock time and date at job start Tue Mar 31 2020 10:46:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.38384 * 119.92818 * 2 1
4 4 C 1.38336 * 120.29125 * 179.97438 * 3 2 1
5 5 C 1.37975 * 120.14648 * 359.97438 * 4 3 2
6 6 C 1.50700 * 120.07315 * 179.72023 * 5 4 3
7 7 C 1.39552 * 119.85320 * 359.97438 * 5 4 3
8 8 C 1.47849 * 120.14632 * 179.97438 * 7 5 4
9 9 O 1.21554 * 119.99754 * 6.29735 * 8 7 5
10 10 N 1.34779 * 120.00191 * 186.29224 * 8 7 5
11 11 C 1.46494 * 119.99897 * 180.02562 * 10 8 7
12 12 H 1.09004 * 110.56156 * 32.10296 * 11 10 8
13 13 C 1.54853 * 110.62739 * 269.02731 * 11 10 8
14 14 C 1.55846 * 103.44656 * 241.51036 * 13 11 10
15 15 H 1.08999 * 115.55942 * 158.81135 * 14 13 11
16 16 C 1.55838 * 105.06393 * 288.17480 * 14 13 11
17 17 C 1.54848 * 103.44721 * 71.82801 * 16 14 13
18 18 C 1.55848 * 110.62545 * 155.00554 * 11 10 8
19 19 H 1.09001 * 115.55735 * 319.67511 * 18 11 10
20 20 N 1.50225 * 101.05263 * 85.55243 * 18 11 10
21 21 C 1.36946 * 130.83795 * 233.94947 * 20 18 11
22 22 H 1.07995 * 119.99899 * 359.97438 * 21 20 18
23 23 C 1.38810 * 119.99893 * 180.02562 * 21 20 18
24 24 N 1.31613 * 120.00364 * 359.97438 * 23 21 20
25 25 Si 1.86807 * 119.99673 * 179.97438 * 23 21 20
26 26 H 1.48502 * 109.47055 * 89.99898 * 25 23 21
27 27 H 1.48498 * 109.46847 * 209.99543 * 25 23 21
28 28 H 1.48497 * 109.47250 * 329.99789 * 25 23 21
29 29 C 1.37937 * 119.92835 * 179.97438 * 2 1 3
30 30 H 1.09008 * 109.47218 * 89.99998 * 1 2 3
31 31 H 1.09000 * 109.47653 * 209.99982 * 1 2 3
32 32 H 1.09005 * 109.47497 * 330.00156 * 1 2 3
33 33 H 1.07998 * 119.85230 * 359.97438 * 3 2 1
34 34 H 1.07997 * 119.92704 * 179.97438 * 4 3 2
35 35 H 1.09001 * 109.46977 * 96.59627 * 6 5 4
36 36 H 1.09000 * 109.47570 * 216.59200 * 6 5 4
37 37 H 1.08997 * 109.47253 * 336.59493 * 6 5 4
38 38 H 0.97000 * 119.99875 * 0.02562 * 10 8 7
39 39 H 1.09001 * 110.62370 * 0.02562 * 13 11 10
40 40 H 1.08999 * 110.62547 * 123.02169 * 13 11 10
41 41 H 1.09004 * 110.62373 * 190.31289 * 16 14 13
42 42 H 1.09001 * 110.62902 * 313.17566 * 16 14 13
43 43 H 1.09004 * 110.62503 * 241.51250 * 17 16 14
44 44 H 1.08997 * 110.63259 * 118.48434 * 17 16 14
45 45 H 0.97004 * 120.00466 * 180.02562 * 24 23 21
46 46 H 1.08006 * 120.07173 * 0.02562 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1974 1.1993 0.0000
4 6 3.5807 1.2081 0.0005
5 6 4.2812 0.0194 0.0016
6 6 5.7881 0.0308 -0.0042
7 6 3.5911 -1.1936 0.0027
8 6 4.3352 -2.4712 0.0033
9 8 5.5452 -2.4697 0.1183
10 7 3.6717 -3.6375 -0.1236
11 6 4.4090 -4.9034 -0.1225
12 1 5.2929 -4.8311 0.5114
13 6 4.7997 -5.3085 -1.5651
14 6 4.0650 -6.6674 -1.7715
15 1 3.9003 -6.9602 -2.8084
16 6 4.8426 -7.6868 -0.8857
17 6 4.4519 -7.2819 0.5569
18 6 3.4914 -6.0727 0.3463
19 1 2.8216 -5.8418 1.1746
20 7 2.8278 -6.4540 -0.9464
21 6 1.5028 -6.5713 -1.2722
22 1 0.7445 -6.3735 -0.5292
23 6 1.1347 -6.9455 -2.5573
24 7 2.0589 -7.1871 -3.4626
25 14 -0.6726 -7.1063 -3.0015
26 1 -1.1767 -5.8030 -3.5040
27 1 -0.8330 -8.1390 -4.0565
28 1 -1.4449 -7.5047 -1.7973
29 6 2.1951 -1.1954 0.0005
30 1 -0.3634 0.0000 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3634 0.8900 0.5138
33 1 1.6538 2.1325 -0.0004
34 1 4.1135 2.1474 0.0001
35 1 6.1562 -0.0813 1.0157
36 1 6.1555 -0.7934 -0.6156
37 1 6.1427 0.9753 -0.4167
38 1 2.7061 -3.6387 -0.2157
39 1 4.4452 -4.5672 -2.2814
40 1 5.8786 -5.4388 -1.6485
41 1 4.5196 -8.7057 -1.0993
42 1 5.9173 -7.5862 -1.0377
43 1 5.3330 -6.9784 1.1224
44 1 3.9351 -8.0998 1.0588
45 1 1.8016 -7.4482 -4.3607
46 1 1.6551 -2.1308 0.0005
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001098279103.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:46:41
Heat of formation + Delta-G solvation = 11.808914 kcal
Electronic energy + Delta-G solvation = -26747.570321 eV
Core-core repulsion = 23216.192815 eV
Total energy + Delta-G solvation = -3531.377507 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.61081 -40.59576 -39.16164 -35.57791 -34.57947 -34.37568 -32.31331 -30.97927
-30.42959 -30.08343 -29.10533 -26.21368 -25.93956 -24.79924 -23.12123 -21.94815
-21.46588 -21.07449 -20.21931 -18.85372 -18.31355 -17.38771 -16.78888 -16.54188
-16.23991 -16.11468 -15.92475 -15.62490 -15.20101 -14.83943 -14.59128 -14.29300
-14.00861 -13.77237 -13.71685 -13.65709 -13.36948 -12.92843 -12.88322 -12.80113
-12.76003 -12.68958 -12.52068 -12.45676 -12.11135 -12.00369 -11.94141 -11.90581
-11.69436 -11.15598 -10.94566 -10.88165 -10.50773 -10.08895 -9.84442 -9.42486
-8.87125 -7.75705 -5.15734 -0.10858 0.36577 1.48855 1.49622 1.57701
1.88800 2.26891 2.50324 2.83569 3.37534 3.44299 3.68842 3.82366
3.87300 4.01986 4.06929 4.08270 4.26093 4.29178 4.42865 4.45482
4.48084 4.60769 4.64925 4.68964 4.75519 4.82144 4.82801 4.83673
4.87978 4.89273 4.99345 5.07909 5.15337 5.16757 5.20676 5.29459
5.36916 5.37534 5.51574 5.57370 5.59952 5.64302 5.72429 5.89775
5.98509 6.27074 6.61611 7.05827 7.24530 7.72622 8.58524 9.31708
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.012197 B = 0.004708 C = 0.003670
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2295.074710 B = 5945.430802 C = 7627.659477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.106 4.106
3 C -0.088 4.088
4 C -0.128 4.128
5 C -0.049 4.049
6 C -0.113 4.113
7 C -0.156 4.156
8 C 0.549 3.451
9 O -0.568 6.568
10 N -0.701 5.701
11 C 0.139 3.861
12 H 0.088 0.912
13 C -0.133 4.133
14 C 0.140 3.860
15 H 0.116 0.884
16 C -0.131 4.131
17 C -0.118 4.118
18 C 0.126 3.874
19 H 0.101 0.899
20 N -0.610 5.610
21 C -0.215 4.215
22 H 0.085 0.915
23 C -0.066 4.066
24 N -0.948 5.948
25 Si 0.973 3.027
26 H -0.290 1.290
27 H -0.301 1.301
28 H -0.270 1.270
29 C -0.093 4.093
30 H 0.074 0.926
31 H 0.067 0.933
32 H 0.088 0.912
33 H 0.159 0.841
34 H 0.156 0.844
35 H 0.069 0.931
36 H 0.067 0.933
37 H 0.079 0.921
38 H 0.402 0.598
39 H 0.030 0.970
40 H 0.067 0.933
41 H 0.039 0.961
42 H 0.071 0.929
43 H 0.082 0.918
44 H 0.060 0.940
45 H 0.245 0.755
46 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.991 15.147 8.914 17.603
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.106 4.106
3 C -0.106 4.106
4 C -0.145 4.145
5 C -0.050 4.050
6 C -0.169 4.169
7 C -0.159 4.159
8 C 0.338 3.662
9 O -0.450 6.450
10 N -0.350 5.350
11 C 0.033 3.967
12 H 0.106 0.894
13 C -0.173 4.173
14 C 0.033 3.967
15 H 0.133 0.867
16 C -0.170 4.170
17 C -0.158 4.158
18 C 0.019 3.981
19 H 0.119 0.881
20 N -0.331 5.331
21 C -0.344 4.344
22 H 0.103 0.897
23 C -0.259 4.259
24 N -0.598 5.598
25 Si 0.803 3.197
26 H -0.217 1.217
27 H -0.228 1.228
28 H -0.195 1.195
29 C -0.112 4.112
30 H 0.093 0.907
31 H 0.086 0.914
32 H 0.107 0.893
33 H 0.176 0.824
34 H 0.174 0.826
35 H 0.087 0.913
36 H 0.085 0.915
37 H 0.098 0.902
38 H 0.238 0.762
39 H 0.049 0.951
40 H 0.085 0.915
41 H 0.058 0.942
42 H 0.089 0.911
43 H 0.100 0.900
44 H 0.079 0.921
45 H 0.055 0.945
46 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 1.570 15.035 8.820 17.502
hybrid contribution -1.233 -0.651 -0.807 1.611
sum 0.337 14.384 8.013 16.469
Atomic orbital electron populations
1.20845 0.89066 1.03958 1.03103 1.20165 0.97686 0.92506 1.00252
1.21609 0.94098 0.98463 0.96397 1.21345 0.94580 0.97586 1.01010
1.20249 0.97160 0.91957 0.95603 1.20953 0.90160 1.02921 1.02849
1.19866 0.94193 0.92933 1.08883 1.18677 0.87066 0.84446 0.76016
1.90651 1.14682 1.87601 1.52083 1.45949 1.11246 1.05501 1.72339
1.22482 0.94926 0.82735 0.96580 0.89389 1.23322 0.99025 0.99099
0.95875 1.23597 0.83713 0.91500 0.97890 0.86679 1.22939 0.99029
0.98799 0.96215 1.22819 0.98848 0.97694 0.96391 1.23369 0.92498
0.92685 0.89526 0.88147 1.46718 1.00947 1.78244 1.07216 1.19351
0.82070 1.37583 0.95372 0.89698 1.25419 1.00932 1.03195 0.96310
1.69716 1.31907 1.54614 1.03555 0.85144 0.80393 0.76747 0.77445
1.21707 1.22808 1.19508 1.21359 0.92461 0.99220 0.98163 0.90708
0.91431 0.89296 0.82358 0.82631 0.91263 0.91466 0.90189 0.76175
0.95073 0.91492 0.94237 0.91063 0.89998 0.92080 0.94527 0.85779
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.83 10.01 71.23 0.71 -1.12 16
2 C -0.11 -2.27 5.87 -19.90 -0.12 -2.39 16
3 C -0.09 -1.59 9.69 22.33 0.22 -1.37 16
4 C -0.13 -2.55 9.66 22.23 0.21 -2.33 16
5 C -0.05 -1.30 5.91 -19.61 -0.12 -1.42 16
6 C -0.11 -2.92 8.73 71.24 0.62 -2.30 16
7 C -0.16 -4.77 5.87 -20.09 -0.12 -4.89 16
8 C 0.55 19.67 7.70 86.79 0.67 20.34 16
9 O -0.57 -22.56 13.00 -3.89 -0.05 -22.61 16
10 N -0.70 -25.16 5.02 -437.76 -2.20 -27.36 16
11 C 0.14 5.19 2.80 46.61 0.13 5.32 16
12 H 0.09 3.19 7.23 -2.38 -0.02 3.18 16
13 C -0.13 -5.55 6.23 32.21 0.20 -5.35 16
14 C 0.14 6.47 4.72 46.23 0.22 6.69 16
15 H 0.12 6.31 5.52 -2.39 -0.01 6.30 16
16 C -0.13 -5.07 6.44 32.21 0.21 -4.86 16
17 C -0.12 -4.03 6.44 32.21 0.21 -3.83 16
18 C 0.13 4.78 5.06 46.23 0.23 5.01 16
19 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16
20 N -0.61 -28.80 2.99 -615.27 -1.84 -30.64 16
21 C -0.21 -11.17 10.59 84.03 0.89 -10.28 16
22 H 0.09 4.17 7.83 -2.91 -0.02 4.15 16
23 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16
24 N -0.95 -54.81 10.46 21.65 0.23 -54.58 16
25 Si 0.97 44.23 29.55 68.60 2.03 46.25 16
26 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16
27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16
28 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
29 C -0.09 -2.51 9.17 22.53 0.21 -2.30 16
30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16
31 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16
32 H 0.09 1.02 8.08 -2.38 -0.02 1.00 16
33 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16
34 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16
35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
36 H 0.07 2.16 5.85 -2.39 -0.01 2.14 16
37 H 0.08 1.57 8.04 -2.39 -0.02 1.55 16
38 H 0.40 14.18 6.73 -92.71 -0.62 13.55 16
39 H 0.03 1.44 7.98 -2.39 -0.02 1.42 16
40 H 0.07 2.57 7.82 -2.39 -0.02 2.55 16
41 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16
42 H 0.07 2.41 7.82 -2.39 -0.02 2.40 16
43 H 0.08 2.35 7.82 -2.38 -0.02 2.33 16
44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16
45 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16
46 H 0.12 3.31 6.46 -2.91 -0.02 3.29 16
Total: -1.00 -65.00 363.14 3.38 -61.63
By element:
Atomic # 1 Polarization: 35.12 SS G_CDS: 0.36 Total: 35.49 kcal
Atomic # 6 Polarization: -13.03 SS G_CDS: 4.84 Total: -8.19 kcal
Atomic # 7 Polarization: -108.77 SS G_CDS: -3.81 Total: -112.58 kcal
Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.61 kcal
Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal
Total: -65.00 3.38 -61.63 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098279103.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.435 kcal
(2) G-P(sol) polarization free energy of solvation -65.002 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.433 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.809 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds