Wall clock time and date at job start Tue Mar 31 2020 10:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38356 * 119.93322 * 2 1 4 4 C 1.38352 * 120.29601 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.92890 * 180.02562 * 4 3 2 6 6 C 1.37956 * 120.14842 * 359.97213 * 4 3 2 7 7 C 1.39583 * 119.84929 * 0.03252 * 6 4 3 8 8 C 1.47846 * 120.14171 * 179.97438 * 7 6 4 9 9 O 1.21543 * 120.00084 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99806 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.55791 * 34.30247 * 11 10 8 13 13 C 1.54855 * 110.62838 * 271.40557 * 11 10 8 14 14 C 1.55849 * 103.44115 * 241.50716 * 13 11 10 15 15 H 1.09004 * 115.55627 * 158.81461 * 14 13 11 16 16 C 1.55842 * 105.06461 * 288.17229 * 14 13 11 17 17 C 1.55161 * 103.50064 * 71.74490 * 16 14 13 18 18 C 1.55841 * 110.62948 * 157.20136 * 11 10 8 19 19 H 1.09001 * 115.56255 * 319.68224 * 18 11 10 20 20 N 1.50236 * 101.05406 * 32.93613 * 14 13 11 21 21 C 1.36936 * 130.84092 * 126.04221 * 20 14 13 22 22 H 1.07993 * 120.00299 * 179.97438 * 21 20 14 23 23 C 1.38815 * 119.99876 * 359.97438 * 21 20 14 24 24 N 1.31618 * 119.99895 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00187 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47022 * 90.00057 * 25 23 21 27 27 H 1.48494 * 109.47372 * 209.99674 * 25 23 21 28 28 H 1.48494 * 109.47247 * 330.00312 * 25 23 21 29 29 C 1.37961 * 119.92344 * 180.26341 * 2 1 3 30 30 H 1.08998 * 109.47550 * 89.99546 * 1 2 3 31 31 H 1.09003 * 109.47491 * 209.99867 * 1 2 3 32 32 H 1.09004 * 109.47003 * 329.99427 * 1 2 3 33 33 H 1.08001 * 119.84730 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.46698 * 269.97575 * 5 4 3 35 35 H 1.08998 * 109.46962 * 29.96951 * 5 4 3 36 36 H 1.08995 * 109.47381 * 149.97362 * 5 4 3 37 37 H 1.07998 * 120.07547 * 180.02562 * 6 4 3 38 38 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.62416 * 359.97438 * 13 11 10 40 40 H 1.08994 * 110.62632 * 122.85690 * 13 11 10 41 41 H 1.08996 * 110.62687 * 190.31480 * 16 14 13 42 42 H 1.09000 * 110.63121 * 313.33961 * 16 14 13 43 43 H 1.09007 * 110.57163 * 241.61623 * 17 16 14 44 44 H 1.08997 * 110.71417 * 118.57508 * 17 16 14 45 45 H 0.97001 * 120.00255 * 179.97438 * 24 23 21 46 46 H 1.07997 * 120.08209 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1990 0.0000 4 6 3.5808 1.2078 -0.0005 5 6 4.3244 2.5186 0.0001 6 6 4.2812 0.0192 -0.0005 7 6 3.5909 -1.1940 -0.0006 8 6 4.3351 -2.4715 -0.0011 9 8 5.5505 -2.4669 -0.0019 10 7 3.6656 -3.6413 -0.0007 11 6 4.4028 -4.9072 -0.0018 12 1 5.3246 -4.8138 0.5725 13 6 4.7065 -5.3604 -1.4510 14 6 3.9621 -6.7246 -1.5675 15 1 3.7357 -7.0517 -2.5824 16 6 4.7926 -7.7149 -0.6967 17 6 4.4909 -7.2605 0.7559 18 6 3.5178 -6.0584 0.5640 19 1 2.9010 -5.7982 1.4242 20 7 2.7765 -6.4828 -0.6771 21 6 1.4345 -6.6095 -0.9186 22 1 0.7220 -6.3860 -0.1385 23 6 0.9901 -7.0251 -2.1663 24 7 1.8585 -7.2970 -3.1172 25 14 -0.8404 -7.1987 -2.4956 26 1 -1.3751 -5.9119 -3.0092 27 1 -1.0629 -8.2651 -3.5047 28 1 -1.5384 -7.5567 -1.2348 29 6 2.1952 -1.1957 -0.0055 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6537 2.1322 -0.0004 34 1 4.5037 2.8350 -1.0275 35 1 3.7296 3.2735 0.5141 36 1 5.2778 2.3953 0.5138 37 1 5.3612 0.0274 -0.0005 38 1 2.6956 -3.6449 -0.0004 39 1 4.3082 -4.6434 -2.1690 40 1 5.7789 -5.4917 -1.5955 41 1 4.4583 -8.7400 -0.8564 42 1 5.8563 -7.6185 -0.9142 43 1 5.4054 -6.9385 1.2542 44 1 4.0076 -8.0599 1.3174 45 1 1.5480 -7.5878 -3.9890 46 1 1.6553 -2.1310 -0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098279669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:46 Heat of formation + Delta-G solvation = 21.161295 kcal Electronic energy + Delta-G solvation = -26450.458838 eV Core-core repulsion = 22919.486881 eV Total energy + Delta-G solvation = -3530.971957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21342 -39.19970 -37.93438 -34.06443 -33.43330 -32.59980 -32.02966 -29.10656 -28.84039 -27.89721 -27.36079 -26.60671 -24.32313 -23.70671 -21.25152 -20.70043 -19.83291 -19.58745 -18.65810 -17.17398 -16.98468 -16.24150 -15.86166 -15.13577 -14.83977 -14.58179 -14.38326 -14.03661 -13.78028 -13.72079 -13.37432 -13.33018 -13.08895 -12.74022 -12.64514 -12.06633 -12.04821 -11.86158 -11.62190 -11.55816 -11.21581 -11.13477 -11.08780 -10.94367 -10.91726 -10.50140 -10.36914 -10.11588 -9.92740 -9.72288 -9.25644 -9.15782 -8.98040 -8.87439 -8.64954 -8.41011 -6.96425 -5.76064 -3.15210 0.91455 1.29715 3.05360 3.34135 3.39315 3.41772 3.59355 3.93353 4.38540 4.63177 4.68427 4.81081 5.07447 5.11450 5.20081 5.23357 5.33819 5.39652 5.43891 5.49361 5.54074 5.63635 5.67436 5.70232 5.74609 5.86711 5.94932 6.05147 6.05705 6.11548 6.14769 6.30542 6.34083 6.41280 6.43997 6.47275 6.51232 6.60421 6.74394 6.83128 6.87188 6.95918 7.12707 7.33262 7.44913 7.78055 8.00442 8.15778 8.61529 9.05367 9.68534 10.49974 11.32890 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.004319 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.653916 B = 6482.148191 C = 8095.719636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.102 4.102 4 C -0.096 4.096 5 C -0.112 4.112 6 C -0.070 4.070 7 C -0.119 4.119 8 C 0.552 3.448 9 O -0.550 6.550 10 N -0.699 5.699 11 C 0.129 3.871 12 H 0.079 0.921 13 C -0.143 4.143 14 C 0.154 3.846 15 H 0.153 0.847 16 C -0.138 4.138 17 C -0.127 4.127 18 C 0.124 3.876 19 H 0.088 0.912 20 N -0.591 5.591 21 C -0.215 4.215 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.090 4.090 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.402 0.598 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 14.178 6.740 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.121 4.121 4 C -0.096 4.096 5 C -0.169 4.169 6 C -0.089 4.089 7 C -0.122 4.122 8 C 0.339 3.661 9 O -0.430 6.430 10 N -0.348 5.348 11 C 0.023 3.977 12 H 0.097 0.903 13 C -0.183 4.183 14 C 0.048 3.952 15 H 0.170 0.830 16 C -0.177 4.177 17 C -0.167 4.167 18 C 0.016 3.984 19 H 0.106 0.894 20 N -0.312 5.312 21 C -0.343 4.343 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.566 5.566 25 Si 0.745 3.255 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.109 4.109 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.238 0.762 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.995 14.054 6.549 15.633 hybrid contribution -1.406 -0.151 -0.221 1.431 sum 0.589 13.903 6.328 15.287 Atomic orbital electron populations 1.20807 0.90741 1.02923 1.02687 1.19834 0.96331 0.92747 1.00064 1.21055 0.93496 0.97557 0.99948 1.19843 0.93758 0.95264 1.00693 1.20774 1.00014 0.93640 1.02429 1.21116 1.00514 0.90392 0.96848 1.20066 0.93614 0.93957 1.04562 1.18248 0.87252 0.83818 0.76806 1.90715 1.13449 1.87707 1.51113 1.45960 1.10686 1.05372 1.72789 1.22660 0.94730 0.82288 0.98071 0.90265 1.23466 0.98868 1.00848 0.95141 1.23756 0.83455 0.89781 0.98244 0.82988 1.23105 0.98349 1.00626 0.95656 1.22909 0.97973 0.98330 0.97462 1.23251 0.91867 0.92078 0.91245 0.89398 1.46643 1.01226 1.76463 1.06918 1.18994 0.80247 1.38403 0.96660 0.90438 1.24694 0.97709 1.02083 0.96031 1.69460 1.31569 1.51872 1.03741 0.86081 0.84424 0.77396 0.77624 1.21713 1.21687 1.20796 1.21297 0.93050 0.98307 0.98249 0.90908 0.91128 0.91583 0.85916 0.91111 0.91566 0.91362 0.84875 0.76249 0.92258 0.92779 0.92602 0.93308 0.92954 0.92399 0.93530 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.00 0.36 -0.72 16 2 C -0.09 -1.06 5.87 -104.68 -0.61 -1.67 16 3 C -0.10 -1.11 9.34 -39.50 -0.37 -1.48 16 4 C -0.10 -1.10 5.87 -104.68 -0.61 -1.71 16 5 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 6 C -0.07 -0.97 9.24 -39.18 -0.36 -1.34 16 7 C -0.12 -1.84 5.87 -104.96 -0.62 -2.45 16 8 C 0.55 10.03 7.77 -12.33 -0.10 9.93 16 9 O -0.55 -11.46 16.03 5.33 0.09 -11.37 16 10 N -0.70 -12.58 5.04 -52.34 -0.26 -12.84 16 11 C 0.13 2.46 2.75 -65.44 -0.18 2.28 16 12 H 0.08 1.52 7.29 -51.93 -0.38 1.14 16 13 C -0.14 -2.98 6.22 -24.23 -0.15 -3.13 16 14 C 0.15 3.52 4.72 -62.80 -0.30 3.22 16 15 H 0.15 3.98 5.52 -51.93 -0.29 3.69 16 16 C -0.14 -2.73 6.45 -24.07 -0.16 -2.89 16 17 C -0.13 -2.30 6.46 -24.07 -0.16 -2.46 16 18 C 0.12 2.42 5.07 -62.55 -0.32 2.10 16 19 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 20 N -0.59 -13.91 2.99 -145.48 -0.44 -14.35 16 21 C -0.22 -5.55 10.59 -15.06 -0.16 -5.71 16 22 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -25.60 10.46 55.49 0.58 -25.01 16 25 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 C -0.09 -1.24 9.19 -39.18 -0.36 -1.60 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.13 1.86 7.65 -52.49 -0.40 1.46 16 38 H 0.40 6.94 6.67 -40.82 -0.27 6.67 16 39 H 0.06 1.35 7.98 -51.93 -0.41 0.93 16 40 H 0.05 1.06 7.82 -51.93 -0.41 0.65 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 43 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.13 1.71 6.41 -52.49 -0.34 1.37 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -29.94 368.57 -10.40 -40.34 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.07 Total: 10.09 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -3.82 Total: -8.55 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.12 Total: -52.21 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.94 -10.40 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098279669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.497 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds