Wall clock time and date at job start Tue Mar 31 2020 10:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38356 * 119.93322 * 2 1 4 4 C 1.38352 * 120.29601 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.92890 * 180.02562 * 4 3 2 6 6 C 1.37956 * 120.14842 * 359.97213 * 4 3 2 7 7 C 1.39583 * 119.84929 * 0.03252 * 6 4 3 8 8 C 1.47846 * 120.14171 * 179.97438 * 7 6 4 9 9 O 1.21543 * 120.00084 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99806 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.55791 * 34.30247 * 11 10 8 13 13 C 1.54855 * 110.62838 * 271.40557 * 11 10 8 14 14 C 1.55849 * 103.44115 * 241.50716 * 13 11 10 15 15 H 1.09004 * 115.55627 * 158.81461 * 14 13 11 16 16 C 1.55842 * 105.06461 * 288.17229 * 14 13 11 17 17 C 1.55161 * 103.50064 * 71.74490 * 16 14 13 18 18 C 1.55841 * 110.62948 * 157.20136 * 11 10 8 19 19 H 1.09001 * 115.56255 * 319.68224 * 18 11 10 20 20 N 1.50236 * 101.05406 * 32.93613 * 14 13 11 21 21 C 1.36936 * 130.84092 * 126.04221 * 20 14 13 22 22 H 1.07993 * 120.00299 * 179.97438 * 21 20 14 23 23 C 1.38815 * 119.99876 * 359.97438 * 21 20 14 24 24 N 1.31618 * 119.99895 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00187 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47022 * 90.00057 * 25 23 21 27 27 H 1.48494 * 109.47372 * 209.99674 * 25 23 21 28 28 H 1.48494 * 109.47247 * 330.00312 * 25 23 21 29 29 C 1.37961 * 119.92344 * 180.26341 * 2 1 3 30 30 H 1.08998 * 109.47550 * 89.99546 * 1 2 3 31 31 H 1.09003 * 109.47491 * 209.99867 * 1 2 3 32 32 H 1.09004 * 109.47003 * 329.99427 * 1 2 3 33 33 H 1.08001 * 119.84730 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.46698 * 269.97575 * 5 4 3 35 35 H 1.08998 * 109.46962 * 29.96951 * 5 4 3 36 36 H 1.08995 * 109.47381 * 149.97362 * 5 4 3 37 37 H 1.07998 * 120.07547 * 180.02562 * 6 4 3 38 38 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.62416 * 359.97438 * 13 11 10 40 40 H 1.08994 * 110.62632 * 122.85690 * 13 11 10 41 41 H 1.08996 * 110.62687 * 190.31480 * 16 14 13 42 42 H 1.09000 * 110.63121 * 313.33961 * 16 14 13 43 43 H 1.09007 * 110.57163 * 241.61623 * 17 16 14 44 44 H 1.08997 * 110.71417 * 118.57508 * 17 16 14 45 45 H 0.97001 * 120.00255 * 179.97438 * 24 23 21 46 46 H 1.07997 * 120.08209 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1990 0.0000 4 6 3.5808 1.2078 -0.0005 5 6 4.3244 2.5186 0.0001 6 6 4.2812 0.0192 -0.0005 7 6 3.5909 -1.1940 -0.0006 8 6 4.3351 -2.4715 -0.0011 9 8 5.5505 -2.4669 -0.0019 10 7 3.6656 -3.6413 -0.0007 11 6 4.4028 -4.9072 -0.0018 12 1 5.3246 -4.8138 0.5725 13 6 4.7065 -5.3604 -1.4510 14 6 3.9621 -6.7246 -1.5675 15 1 3.7357 -7.0517 -2.5824 16 6 4.7926 -7.7149 -0.6967 17 6 4.4909 -7.2605 0.7559 18 6 3.5178 -6.0584 0.5640 19 1 2.9010 -5.7982 1.4242 20 7 2.7765 -6.4828 -0.6771 21 6 1.4345 -6.6095 -0.9186 22 1 0.7220 -6.3860 -0.1385 23 6 0.9901 -7.0251 -2.1663 24 7 1.8585 -7.2970 -3.1172 25 14 -0.8404 -7.1987 -2.4956 26 1 -1.3751 -5.9119 -3.0092 27 1 -1.0629 -8.2651 -3.5047 28 1 -1.5384 -7.5567 -1.2348 29 6 2.1952 -1.1957 -0.0055 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6537 2.1322 -0.0004 34 1 4.5037 2.8350 -1.0275 35 1 3.7296 3.2735 0.5141 36 1 5.2778 2.3953 0.5138 37 1 5.3612 0.0274 -0.0005 38 1 2.6956 -3.6449 -0.0004 39 1 4.3082 -4.6434 -2.1690 40 1 5.7789 -5.4917 -1.5955 41 1 4.4583 -8.7400 -0.8564 42 1 5.8563 -7.6185 -0.9142 43 1 5.4054 -6.9385 1.2542 44 1 4.0076 -8.0599 1.3174 45 1 1.5480 -7.5878 -3.9890 46 1 1.6553 -2.1310 -0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098279669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:45 Heat of formation + Delta-G solvation = 5.609403 kcal Electronic energy + Delta-G solvation = -26451.133219 eV Core-core repulsion = 22919.486881 eV Total energy + Delta-G solvation = -3531.646338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55513 -40.55838 -39.30821 -35.47613 -34.56890 -34.30508 -33.12457 -30.96221 -30.43278 -29.39148 -28.19935 -27.52429 -26.16202 -25.00462 -22.67770 -21.74003 -21.44794 -21.02079 -20.27730 -18.85307 -18.40223 -17.53489 -16.98362 -16.77095 -16.25423 -16.02431 -15.78539 -15.57754 -15.11906 -14.81175 -14.65735 -14.31298 -14.01431 -13.93180 -13.70784 -13.67015 -13.33165 -12.93954 -12.91486 -12.79705 -12.75427 -12.72465 -12.52784 -12.43793 -12.11869 -12.00390 -11.95135 -11.91643 -11.71428 -11.27542 -10.98283 -10.94046 -10.71750 -10.09493 -9.73999 -9.59699 -8.87728 -7.75356 -5.15460 -0.15511 0.33252 1.49291 1.50165 1.58267 1.82615 2.21430 2.50434 2.81639 3.37455 3.42786 3.64294 3.77710 3.83042 3.99804 4.06440 4.12926 4.25291 4.32134 4.37275 4.43943 4.44845 4.52955 4.61761 4.64998 4.68719 4.81115 4.82074 4.83855 4.85915 4.89534 4.98218 5.07008 5.14830 5.16264 5.17600 5.27694 5.34094 5.37175 5.50541 5.51366 5.55958 5.58030 5.69114 5.89051 5.95612 6.26395 6.56595 7.05667 7.18219 7.72435 8.58309 9.32069 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.004319 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.653916 B = 6482.148191 C = 8095.719636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.095 4.095 4 C -0.093 4.093 5 C -0.111 4.111 6 C -0.086 4.086 7 C -0.143 4.143 8 C 0.550 3.450 9 O -0.583 6.583 10 N -0.698 5.698 11 C 0.138 3.862 12 H 0.086 0.914 13 C -0.133 4.133 14 C 0.141 3.859 15 H 0.116 0.884 16 C -0.131 4.131 17 C -0.118 4.118 18 C 0.126 3.874 19 H 0.104 0.896 20 N -0.610 5.610 21 C -0.215 4.215 22 H 0.086 0.914 23 C -0.067 4.067 24 N -0.948 5.948 25 Si 0.974 3.026 26 H -0.289 1.289 27 H -0.302 1.302 28 H -0.270 1.270 29 C -0.102 4.102 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.124 0.876 38 H 0.404 0.596 39 H 0.030 0.970 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.245 0.755 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 16.318 8.475 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.093 4.093 5 C -0.167 4.167 6 C -0.105 4.105 7 C -0.146 4.146 8 C 0.339 3.661 9 O -0.465 6.465 10 N -0.347 5.347 11 C 0.031 3.969 12 H 0.104 0.896 13 C -0.174 4.174 14 C 0.034 3.966 15 H 0.134 0.866 16 C -0.170 4.170 17 C -0.157 4.157 18 C 0.019 3.981 19 H 0.122 0.878 20 N -0.332 5.332 21 C -0.343 4.343 22 H 0.104 0.896 23 C -0.259 4.259 24 N -0.598 5.598 25 Si 0.804 3.196 26 H -0.217 1.217 27 H -0.229 1.229 28 H -0.195 1.195 29 C -0.121 4.121 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.176 0.824 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.142 0.858 38 H 0.241 0.759 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.103 16.205 8.322 18.251 hybrid contribution -1.110 -0.725 -0.752 1.524 sum -0.006 15.481 7.571 17.233 Atomic orbital electron populations 1.20867 0.88841 1.04108 1.03250 1.20173 0.97746 0.92317 0.98921 1.21486 0.93339 0.98576 0.97853 1.20206 0.94386 0.95596 0.99080 1.20850 1.00153 0.92342 1.03393 1.21205 1.00338 0.91028 0.97921 1.19944 0.94324 0.92991 1.07342 1.18713 0.87033 0.84663 0.75663 1.90678 1.14843 1.88243 1.52777 1.45924 1.10768 1.05208 1.72771 1.22510 0.95064 0.82687 0.96598 0.89594 1.23330 0.99086 0.99170 0.95792 1.23586 0.84287 0.91478 0.97235 0.86631 1.22998 0.98984 0.98794 0.96230 1.22867 0.98867 0.97622 0.96373 1.23453 0.91831 0.92505 0.90272 0.87844 1.46827 1.00882 1.76767 1.08711 1.19361 0.81683 1.36663 0.96642 0.89607 1.25429 1.01180 1.03066 0.96237 1.69719 1.32878 1.53526 1.03701 0.85130 0.80440 0.76695 0.77382 1.21674 1.22870 1.19480 1.21355 0.92393 0.99291 0.99075 0.90532 0.91257 0.89179 0.82435 0.90170 0.89272 0.91184 0.85772 0.75916 0.95138 0.91581 0.94113 0.91129 0.90003 0.91904 0.94547 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.01 71.23 0.71 -1.12 16 2 C -0.09 -1.97 5.87 -19.90 -0.12 -2.09 16 3 C -0.09 -1.76 9.34 22.33 0.21 -1.55 16 4 C -0.09 -1.93 5.87 -19.90 -0.12 -2.05 16 5 C -0.11 -1.53 10.01 71.24 0.71 -0.82 16 6 C -0.09 -2.38 9.24 22.53 0.21 -2.17 16 7 C -0.14 -4.46 5.87 -20.09 -0.12 -4.58 16 8 C 0.55 20.41 7.77 86.79 0.67 21.08 16 9 O -0.58 -24.81 16.03 -3.85 -0.06 -24.87 16 10 N -0.70 -25.37 5.04 -437.79 -2.20 -27.57 16 11 C 0.14 5.21 2.75 46.61 0.13 5.33 16 12 H 0.09 3.18 7.29 -2.38 -0.02 3.16 16 13 C -0.13 -5.66 6.22 32.21 0.20 -5.46 16 14 C 0.14 6.56 4.72 46.23 0.22 6.77 16 15 H 0.12 6.36 5.52 -2.38 -0.01 6.34 16 16 C -0.13 -5.09 6.45 32.32 0.21 -4.89 16 17 C -0.12 -4.03 6.46 32.32 0.21 -3.82 16 18 C 0.13 4.77 5.07 46.14 0.23 5.01 16 19 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 20 N -0.61 -28.84 2.99 -614.20 -1.84 -30.68 16 21 C -0.21 -11.13 10.59 84.03 0.89 -10.24 16 22 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 23 C -0.07 -3.60 5.50 84.86 0.47 -3.14 16 24 N -0.95 -54.83 10.46 21.65 0.23 -54.60 16 25 Si 0.97 44.13 29.55 68.60 2.03 46.16 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 29 C -0.10 -2.77 9.19 22.53 0.21 -2.56 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 32 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 37 H 0.12 3.56 7.65 -2.91 -0.02 3.54 16 38 H 0.40 14.17 6.67 -92.71 -0.62 13.55 16 39 H 0.03 1.43 7.98 -2.39 -0.02 1.41 16 40 H 0.07 2.59 7.82 -2.39 -0.02 2.57 16 41 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 2.41 7.82 -2.39 -0.02 2.39 16 43 H 0.08 2.35 7.82 -2.38 -0.02 2.34 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 46 H 0.13 3.36 6.41 -2.91 -0.02 3.34 16 Total: -1.00 -66.58 368.57 3.44 -63.14 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.36 Total: 34.71 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.93 Total: -6.27 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.82 Total: -112.86 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.06 Total: -24.87 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.58 3.44 -63.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098279669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.747 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds