Wall clock time and date at job start Tue Mar 31 2020 10:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38379 * 119.92662 * 2 1 4 4 C 1.38336 * 120.28792 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14612 * 359.97322 * 4 3 2 6 6 C 1.39555 * 119.85395 * 0.02562 * 5 4 3 7 7 C 1.47849 * 120.14183 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99508 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00327 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99801 * 179.97438 * 9 7 6 11 11 C 1.54181 * 112.24864 * 299.44912 * 10 9 7 12 12 C 1.54850 * 104.29942 * 261.21509 * 11 10 9 13 13 C 1.56227 * 103.17586 * 322.23312 * 12 11 10 14 14 C 1.54176 * 103.64765 * 37.34285 * 13 12 11 15 15 H 1.09000 * 111.62012 * 99.67097 * 14 13 12 16 16 C 1.53794 * 109.12423 * 223.52536 * 14 13 12 17 17 N 1.47227 * 106.35630 * 133.48364 * 16 14 13 18 18 C 1.36939 * 126.70221 * 148.74210 * 17 16 14 19 19 H 1.07998 * 119.99948 * 194.03354 * 18 17 16 20 20 C 1.38812 * 119.99538 * 14.03583 * 18 17 16 21 21 N 1.31619 * 120.00372 * 8.94899 * 20 18 17 22 22 Si 1.86803 * 119.99622 * 188.94919 * 20 18 17 23 23 H 1.48503 * 109.47147 * 94.98135 * 22 20 18 24 24 H 1.48507 * 109.46971 * 214.98137 * 22 20 18 25 25 H 1.48504 * 109.47399 * 334.97866 * 22 20 18 26 26 C 1.47222 * 106.59822 * 328.76925 * 17 16 14 27 27 C 1.37942 * 119.92362 * 180.25464 * 2 1 3 28 28 H 1.09003 * 109.47227 * 89.99683 * 1 2 3 29 29 H 1.08995 * 109.47744 * 210.00138 * 1 2 3 30 30 H 1.09004 * 109.46963 * 330.00646 * 1 2 3 31 31 H 1.07994 * 119.85382 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.92793 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.07408 * 180.02562 * 5 4 3 34 34 H 0.96998 * 120.00037 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.46538 * 19.91789 * 11 10 9 36 36 H 1.09003 * 110.46658 * 142.51281 * 11 10 9 37 37 H 1.08998 * 110.76188 * 80.17573 * 12 11 10 38 38 H 1.09004 * 110.75901 * 203.36871 * 12 11 10 39 39 H 1.08999 * 109.69726 * 279.36004 * 13 12 11 40 40 H 1.09001 * 111.85253 * 156.36066 * 13 12 11 41 41 H 1.09000 * 110.08230 * 252.70482 * 16 14 13 42 42 H 1.09005 * 110.07990 * 14.26481 * 16 14 13 43 43 H 0.96999 * 119.99789 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.07959 * 150.45572 * 26 17 16 45 45 H 1.09001 * 110.07307 * 272.00816 * 26 17 16 46 46 H 1.08001 * 120.07227 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5910 -1.1937 -0.0005 7 6 4.3352 -2.4713 -0.0010 8 8 3.7314 -3.5262 -0.0015 9 7 5.6829 -2.4662 -0.0010 10 6 6.4201 -3.7322 -0.0010 11 6 6.1076 -4.5897 1.2416 12 6 7.2896 -4.3144 2.2034 13 6 8.5168 -4.2189 1.2413 14 6 7.9502 -3.5030 -0.0011 15 1 8.1987 -2.4417 -0.0013 16 6 8.4669 -4.2064 -1.2673 17 7 7.3001 -4.3861 -2.1472 18 6 7.3011 -4.3932 -3.5165 19 1 6.3705 -4.3063 -4.0576 20 6 8.4983 -4.5120 -4.2091 21 7 9.6085 -4.7938 -3.5607 22 14 8.5335 -4.2720 -6.0613 23 1 8.9026 -2.8674 -6.3715 24 1 9.5347 -5.1907 -6.6605 25 1 7.1915 -4.5671 -6.6244 26 6 6.1321 -4.5561 -1.2673 27 6 2.1952 -1.1955 -0.0053 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6539 2.1325 0.0004 32 1 4.1137 2.1474 -0.0001 33 1 5.3612 0.0274 -0.0005 34 1 6.1647 -1.6243 -0.0011 35 1 5.1670 -4.2761 1.6943 36 1 6.0705 -5.6462 0.9761 37 1 7.1482 -3.3700 2.7289 38 1 7.4107 -5.1343 2.9114 39 1 8.8585 -5.2207 0.9812 40 1 9.3301 -3.6390 1.6775 41 1 9.2156 -3.5867 -1.7607 42 1 8.8937 -5.1757 -1.0093 43 1 10.4449 -4.8772 -4.0448 44 1 5.2346 -4.1828 -1.7605 45 1 6.0080 -5.6078 -1.0092 46 1 1.6551 -2.1308 -0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098713307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:59 Heat of formation + Delta-G solvation = 8.626390 kcal Electronic energy + Delta-G solvation = -26669.816474 eV Core-core repulsion = 23138.300963 eV Total energy + Delta-G solvation = -3531.515511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.46579 -39.25278 -37.67200 -34.45715 -33.73723 -32.69248 -31.44223 -31.13791 -29.44223 -27.80743 -26.95497 -24.74972 -24.69415 -23.54628 -21.92565 -21.15746 -20.28190 -19.34875 -18.85296 -17.57008 -16.73048 -16.06778 -15.85875 -15.21185 -14.90783 -14.76475 -14.69011 -14.20089 -13.96954 -13.76963 -13.61192 -13.45278 -13.20229 -12.63047 -12.44055 -12.42398 -12.10624 -11.72972 -11.64169 -11.46920 -11.24931 -11.18264 -10.88822 -10.79820 -10.73656 -10.57488 -10.25856 -10.24685 -9.95424 -9.71462 -9.66867 -9.46543 -9.05646 -8.86662 -8.67711 -8.47779 -6.77530 -5.74590 -3.07345 0.82277 1.22695 2.99542 3.39489 3.41807 3.46187 3.48377 3.86916 4.50228 4.60914 4.65276 4.73343 4.87305 4.99981 5.02225 5.12640 5.20758 5.24817 5.40242 5.46693 5.49903 5.57520 5.69699 5.77946 5.81560 5.82625 5.86880 5.91617 6.01703 6.06203 6.13539 6.23250 6.24290 6.27512 6.37966 6.42884 6.46380 6.57208 6.69806 6.75156 6.77325 6.89575 7.18147 7.44281 7.57709 7.77209 7.84791 8.28025 8.51673 9.20090 9.81517 10.54182 11.39272 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.004183 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.904874 B = 6692.562180 C = 8035.933063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.102 4.102 4 C -0.124 4.124 5 C -0.092 4.092 6 C -0.122 4.122 7 C 0.555 3.445 8 O -0.534 6.534 9 N -0.699 5.699 10 C 0.163 3.837 11 C -0.116 4.116 12 C -0.124 4.124 13 C -0.113 4.113 14 C -0.117 4.117 15 H 0.072 0.928 16 C 0.172 3.828 17 N -0.596 5.596 18 C -0.225 4.225 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.917 5.917 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.135 3.865 27 C -0.063 4.063 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.395 0.605 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.252 0.748 44 H 0.048 0.952 45 H 0.027 0.973 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.784 11.445 12.314 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.120 4.120 4 C -0.142 4.142 5 C -0.111 4.111 6 C -0.125 4.125 7 C 0.341 3.659 8 O -0.412 6.412 9 N -0.349 5.349 10 C 0.076 3.924 11 C -0.155 4.155 12 C -0.161 4.161 13 C -0.151 4.151 14 C -0.137 4.137 15 H 0.090 0.910 16 C 0.046 3.954 17 N -0.320 5.320 18 C -0.353 4.353 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.008 3.992 27 C -0.082 4.082 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.231 0.769 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.043 10.627 12.088 19.520 hybrid contribution 0.437 0.622 -1.078 1.319 sum -10.607 11.250 11.010 18.981 Atomic orbital electron populations 1.20793 0.90809 1.02862 1.02547 1.19902 0.96381 0.92858 1.00634 1.21200 0.94311 0.97551 0.98940 1.21071 0.94245 0.97986 1.00891 1.21341 0.99927 0.91874 0.97955 1.20095 0.94408 0.93299 1.04725 1.18191 0.82318 0.88627 0.76724 1.90758 1.68522 1.32223 1.49665 1.45911 1.05563 1.09365 1.74038 1.21688 0.90985 0.83363 0.96360 1.22623 0.98085 1.00009 0.94808 1.22758 0.95334 1.00656 0.97386 1.22674 0.96681 1.00955 0.94816 1.23004 0.92445 0.99982 0.98271 0.90983 1.21329 0.90649 0.97203 0.86215 1.44532 1.02168 1.83985 1.01332 1.19036 0.93513 1.43009 0.79748 0.90794 1.24836 0.96021 1.01432 0.97963 1.69930 0.98603 1.53696 1.34193 0.86134 0.77288 0.77486 0.85102 1.21663 1.21702 1.20555 1.21670 0.92027 0.95783 0.89698 1.21169 0.92749 0.98340 0.95913 0.91012 0.91299 0.91520 0.85840 0.85500 0.85624 0.76922 0.91267 0.90572 0.92323 0.91961 0.90975 0.91801 0.90727 0.95435 0.93738 0.93409 0.95540 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.10 -1.03 5.87 -104.68 -0.61 -1.64 16 3 C -0.10 -0.96 9.69 -39.49 -0.38 -1.35 16 4 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 5 C -0.09 -1.06 9.54 -39.19 -0.37 -1.44 16 6 C -0.12 -1.71 5.87 -104.97 -0.62 -2.33 16 7 C 0.55 9.36 6.78 -12.33 -0.08 9.28 16 8 O -0.53 -10.57 13.92 5.32 0.07 -10.50 16 9 N -0.70 -11.33 5.19 -46.75 -0.24 -11.57 16 10 C 0.16 2.98 0.93 -129.89 -0.12 2.85 16 11 C -0.12 -1.92 5.66 -25.14 -0.14 -2.07 16 12 C -0.12 -1.71 6.92 -24.03 -0.17 -1.88 16 13 C -0.11 -1.73 6.48 -24.39 -0.16 -1.89 16 14 C -0.12 -2.11 3.62 -88.69 -0.32 -2.44 16 15 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 16 C 0.17 4.08 5.17 -3.23 -0.02 4.06 16 17 N -0.60 -15.56 3.39 -171.10 -0.58 -16.14 16 18 C -0.22 -6.42 10.28 -15.06 -0.15 -6.58 16 19 H 0.07 2.10 7.84 -52.49 -0.41 1.69 16 20 C -0.01 -0.17 5.39 -17.43 -0.09 -0.26 16 21 N -0.92 -26.91 10.84 55.49 0.60 -26.31 16 22 Si 0.91 22.35 29.56 -169.99 -5.03 17.32 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.14 3.10 6.02 -3.24 -0.02 3.08 16 27 C -0.06 -0.82 9.24 -39.19 -0.36 -1.18 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.13 1.25 6.41 -52.48 -0.34 0.91 16 34 H 0.40 5.46 6.32 -40.82 -0.26 5.21 16 35 H 0.07 1.17 6.69 -51.93 -0.35 0.82 16 36 H 0.08 1.31 7.17 -51.93 -0.37 0.94 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.97 6.77 -51.93 -0.35 1.61 16 42 H 0.03 0.70 7.14 -51.93 -0.37 0.33 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.05 1.16 6.84 -51.93 -0.36 0.81 16 45 H 0.03 0.63 7.12 -51.93 -0.37 0.26 16 46 H 0.14 1.79 7.65 -52.49 -0.40 1.39 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -32.57 359.74 -10.27 -42.84 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.86 Total: 4.85 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -3.66 Total: -5.91 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.22 Total: -54.03 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.57 -10.27 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098713307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.467 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds