Wall clock time and date at job start Tue Mar 31 2020 10:42:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38379 * 119.92662 * 2 1
4 4 C 1.38336 * 120.28792 * 180.02562 * 3 2 1
5 5 C 1.37976 * 120.14612 * 359.97322 * 4 3 2
6 6 C 1.39555 * 119.85395 * 0.02562 * 5 4 3
7 7 C 1.47849 * 120.14183 * 179.97438 * 6 5 4
8 8 O 1.21556 * 119.99508 * 180.02562 * 7 6 5
9 9 N 1.34772 * 120.00327 * 0.02562 * 7 6 5
10 10 C 1.46502 * 119.99801 * 179.97438 * 9 7 6
11 11 C 1.54181 * 112.24864 * 299.44912 * 10 9 7
12 12 C 1.54850 * 104.29942 * 261.21509 * 11 10 9
13 13 C 1.56227 * 103.17586 * 322.23312 * 12 11 10
14 14 C 1.54176 * 103.64765 * 37.34285 * 13 12 11
15 15 H 1.09000 * 111.62012 * 99.67097 * 14 13 12
16 16 C 1.53794 * 109.12423 * 223.52536 * 14 13 12
17 17 N 1.47227 * 106.35630 * 133.48364 * 16 14 13
18 18 C 1.36939 * 126.70221 * 148.74210 * 17 16 14
19 19 H 1.07998 * 119.99948 * 194.03354 * 18 17 16
20 20 C 1.38812 * 119.99538 * 14.03583 * 18 17 16
21 21 N 1.31619 * 120.00372 * 8.94899 * 20 18 17
22 22 Si 1.86803 * 119.99622 * 188.94919 * 20 18 17
23 23 H 1.48503 * 109.47147 * 94.98135 * 22 20 18
24 24 H 1.48507 * 109.46971 * 214.98137 * 22 20 18
25 25 H 1.48504 * 109.47399 * 334.97866 * 22 20 18
26 26 C 1.47222 * 106.59822 * 328.76925 * 17 16 14
27 27 C 1.37942 * 119.92362 * 180.25464 * 2 1 3
28 28 H 1.09003 * 109.47227 * 89.99683 * 1 2 3
29 29 H 1.08995 * 109.47744 * 210.00138 * 1 2 3
30 30 H 1.09004 * 109.46963 * 330.00646 * 1 2 3
31 31 H 1.07994 * 119.85382 * 0.02562 * 3 2 1
32 32 H 1.08007 * 119.92793 * 180.02562 * 4 3 2
33 33 H 1.08004 * 120.07408 * 180.02562 * 5 4 3
34 34 H 0.96998 * 120.00037 * 359.97438 * 9 7 6
35 35 H 1.09000 * 110.46538 * 19.91789 * 11 10 9
36 36 H 1.09003 * 110.46658 * 142.51281 * 11 10 9
37 37 H 1.08998 * 110.76188 * 80.17573 * 12 11 10
38 38 H 1.09004 * 110.75901 * 203.36871 * 12 11 10
39 39 H 1.08999 * 109.69726 * 279.36004 * 13 12 11
40 40 H 1.09001 * 111.85253 * 156.36066 * 13 12 11
41 41 H 1.09000 * 110.08230 * 252.70482 * 16 14 13
42 42 H 1.09005 * 110.07990 * 14.26481 * 16 14 13
43 43 H 0.96999 * 119.99789 * 179.97438 * 21 20 18
44 44 H 1.09002 * 110.07959 * 150.45572 * 26 17 16
45 45 H 1.09001 * 110.07307 * 272.00816 * 26 17 16
46 46 H 1.08001 * 120.07227 * 0.02562 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1974 1.1993 0.0000
4 6 3.5808 1.2080 -0.0005
5 6 4.2812 0.0193 -0.0005
6 6 3.5910 -1.1937 -0.0005
7 6 4.3352 -2.4713 -0.0010
8 8 3.7314 -3.5262 -0.0015
9 7 5.6829 -2.4662 -0.0010
10 6 6.4201 -3.7322 -0.0010
11 6 6.1076 -4.5897 1.2416
12 6 7.2896 -4.3144 2.2034
13 6 8.5168 -4.2189 1.2413
14 6 7.9502 -3.5030 -0.0011
15 1 8.1987 -2.4417 -0.0013
16 6 8.4669 -4.2064 -1.2673
17 7 7.3001 -4.3861 -2.1472
18 6 7.3011 -4.3932 -3.5165
19 1 6.3705 -4.3063 -4.0576
20 6 8.4983 -4.5120 -4.2091
21 7 9.6085 -4.7938 -3.5607
22 14 8.5335 -4.2720 -6.0613
23 1 8.9026 -2.8674 -6.3715
24 1 9.5347 -5.1907 -6.6605
25 1 7.1915 -4.5671 -6.6244
26 6 6.1321 -4.5561 -1.2673
27 6 2.1952 -1.1955 -0.0053
28 1 -0.3634 0.0001 -1.0277
29 1 -0.3634 -0.8899 0.5138
30 1 -0.3633 0.8901 0.5138
31 1 1.6539 2.1325 0.0004
32 1 4.1137 2.1474 -0.0001
33 1 5.3612 0.0274 -0.0005
34 1 6.1647 -1.6243 -0.0011
35 1 5.1670 -4.2761 1.6943
36 1 6.0705 -5.6462 0.9761
37 1 7.1482 -3.3700 2.7289
38 1 7.4107 -5.1343 2.9114
39 1 8.8585 -5.2207 0.9812
40 1 9.3301 -3.6390 1.6775
41 1 9.2156 -3.5867 -1.7607
42 1 8.8937 -5.1757 -1.0093
43 1 10.4449 -4.8772 -4.0448
44 1 5.2346 -4.1828 -1.7605
45 1 6.0080 -5.6078 -1.0092
46 1 1.6551 -2.1308 -0.0099
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001098713307.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:59
Heat of formation + Delta-G solvation = 8.626390 kcal
Electronic energy + Delta-G solvation = -26669.816474 eV
Core-core repulsion = 23138.300963 eV
Total energy + Delta-G solvation = -3531.515511 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-40.46579 -39.25278 -37.67200 -34.45715 -33.73723 -32.69248 -31.44223 -31.13791
-29.44223 -27.80743 -26.95497 -24.74972 -24.69415 -23.54628 -21.92565 -21.15746
-20.28190 -19.34875 -18.85296 -17.57008 -16.73048 -16.06778 -15.85875 -15.21185
-14.90783 -14.76475 -14.69011 -14.20089 -13.96954 -13.76963 -13.61192 -13.45278
-13.20229 -12.63047 -12.44055 -12.42398 -12.10624 -11.72972 -11.64169 -11.46920
-11.24931 -11.18264 -10.88822 -10.79820 -10.73656 -10.57488 -10.25856 -10.24685
-9.95424 -9.71462 -9.66867 -9.46543 -9.05646 -8.86662 -8.67711 -8.47779
-6.77530 -5.74590 -3.07345 0.82277 1.22695 2.99542 3.39489 3.41807
3.46187 3.48377 3.86916 4.50228 4.60914 4.65276 4.73343 4.87305
4.99981 5.02225 5.12640 5.20758 5.24817 5.40242 5.46693 5.49903
5.57520 5.69699 5.77946 5.81560 5.82625 5.86880 5.91617 6.01703
6.06203 6.13539 6.23250 6.24290 6.27512 6.37966 6.42884 6.46380
6.57208 6.69806 6.75156 6.77325 6.89575 7.18147 7.44281 7.57709
7.77209 7.84791 8.28025 8.51673 9.20090 9.81517 10.54182 11.39272
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.012453 B = 0.004183 C = 0.003484
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2247.904874 B = 6692.562180 C = 8035.933063
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.098 4.098
3 C -0.102 4.102
4 C -0.124 4.124
5 C -0.092 4.092
6 C -0.122 4.122
7 C 0.555 3.445
8 O -0.534 6.534
9 N -0.699 5.699
10 C 0.163 3.837
11 C -0.116 4.116
12 C -0.124 4.124
13 C -0.113 4.113
14 C -0.117 4.117
15 H 0.072 0.928
16 C 0.172 3.828
17 N -0.596 5.596
18 C -0.225 4.225
19 H 0.074 0.926
20 C -0.006 4.006
21 N -0.917 5.917
22 Si 0.909 3.091
23 H -0.289 1.289
24 H -0.291 1.291
25 H -0.280 1.280
26 C 0.135 3.865
27 C -0.063 4.063
28 H 0.071 0.929
29 H 0.068 0.932
30 H 0.066 0.934
31 H 0.124 0.876
32 H 0.127 0.873
33 H 0.126 0.874
34 H 0.395 0.605
35 H 0.069 0.931
36 H 0.076 0.924
37 H 0.058 0.942
38 H 0.062 0.938
39 H 0.072 0.928
40 H 0.063 0.937
41 H 0.074 0.926
42 H 0.028 0.972
43 H 0.252 0.748
44 H 0.048 0.952
45 H 0.027 0.973
46 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.784 11.445 12.314 19.973
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.098 4.098
3 C -0.120 4.120
4 C -0.142 4.142
5 C -0.111 4.111
6 C -0.125 4.125
7 C 0.341 3.659
8 O -0.412 6.412
9 N -0.349 5.349
10 C 0.076 3.924
11 C -0.155 4.155
12 C -0.161 4.161
13 C -0.151 4.151
14 C -0.137 4.137
15 H 0.090 0.910
16 C 0.046 3.954
17 N -0.320 5.320
18 C -0.353 4.353
19 H 0.092 0.908
20 C -0.203 4.203
21 N -0.564 5.564
22 Si 0.740 3.260
23 H -0.217 1.217
24 H -0.217 1.217
25 H -0.206 1.206
26 C 0.008 3.992
27 C -0.082 4.082
28 H 0.090 0.910
29 H 0.087 0.913
30 H 0.085 0.915
31 H 0.142 0.858
32 H 0.145 0.855
33 H 0.144 0.856
34 H 0.231 0.769
35 H 0.087 0.913
36 H 0.094 0.906
37 H 0.077 0.923
38 H 0.080 0.920
39 H 0.090 0.910
40 H 0.082 0.918
41 H 0.093 0.907
42 H 0.046 0.954
43 H 0.063 0.937
44 H 0.066 0.934
45 H 0.045 0.955
46 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -11.043 10.627 12.088 19.520
hybrid contribution 0.437 0.622 -1.078 1.319
sum -10.607 11.250 11.010 18.981
Atomic orbital electron populations
1.20793 0.90809 1.02862 1.02547 1.19902 0.96381 0.92858 1.00634
1.21200 0.94311 0.97551 0.98940 1.21071 0.94245 0.97986 1.00891
1.21341 0.99927 0.91874 0.97955 1.20095 0.94408 0.93299 1.04725
1.18191 0.82318 0.88627 0.76724 1.90758 1.68522 1.32223 1.49665
1.45911 1.05563 1.09365 1.74038 1.21688 0.90985 0.83363 0.96360
1.22623 0.98085 1.00009 0.94808 1.22758 0.95334 1.00656 0.97386
1.22674 0.96681 1.00955 0.94816 1.23004 0.92445 0.99982 0.98271
0.90983 1.21329 0.90649 0.97203 0.86215 1.44532 1.02168 1.83985
1.01332 1.19036 0.93513 1.43009 0.79748 0.90794 1.24836 0.96021
1.01432 0.97963 1.69930 0.98603 1.53696 1.34193 0.86134 0.77288
0.77486 0.85102 1.21663 1.21702 1.20555 1.21670 0.92027 0.95783
0.89698 1.21169 0.92749 0.98340 0.95913 0.91012 0.91299 0.91520
0.85840 0.85500 0.85624 0.76922 0.91267 0.90572 0.92323 0.91961
0.90975 0.91801 0.90727 0.95435 0.93738 0.93409 0.95540 0.84693
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16
2 C -0.10 -1.03 5.87 -104.68 -0.61 -1.64 16
3 C -0.10 -0.96 9.69 -39.49 -0.38 -1.35 16
4 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16
5 C -0.09 -1.06 9.54 -39.19 -0.37 -1.44 16
6 C -0.12 -1.71 5.87 -104.97 -0.62 -2.33 16
7 C 0.55 9.36 6.78 -12.33 -0.08 9.28 16
8 O -0.53 -10.57 13.92 5.32 0.07 -10.50 16
9 N -0.70 -11.33 5.19 -46.75 -0.24 -11.57 16
10 C 0.16 2.98 0.93 -129.89 -0.12 2.85 16
11 C -0.12 -1.92 5.66 -25.14 -0.14 -2.07 16
12 C -0.12 -1.71 6.92 -24.03 -0.17 -1.88 16
13 C -0.11 -1.73 6.48 -24.39 -0.16 -1.89 16
14 C -0.12 -2.11 3.62 -88.69 -0.32 -2.44 16
15 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16
16 C 0.17 4.08 5.17 -3.23 -0.02 4.06 16
17 N -0.60 -15.56 3.39 -171.10 -0.58 -16.14 16
18 C -0.22 -6.42 10.28 -15.06 -0.15 -6.58 16
19 H 0.07 2.10 7.84 -52.49 -0.41 1.69 16
20 C -0.01 -0.17 5.39 -17.43 -0.09 -0.26 16
21 N -0.92 -26.91 10.84 55.49 0.60 -26.31 16
22 Si 0.91 22.35 29.56 -169.99 -5.03 17.32 16
23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
26 C 0.14 3.10 6.02 -3.24 -0.02 3.08 16
27 C -0.06 -0.82 9.24 -39.19 -0.36 -1.18 16
28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16
30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16
31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16
32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16
33 H 0.13 1.25 6.41 -52.48 -0.34 0.91 16
34 H 0.40 5.46 6.32 -40.82 -0.26 5.21 16
35 H 0.07 1.17 6.69 -51.93 -0.35 0.82 16
36 H 0.08 1.31 7.17 -51.93 -0.37 0.94 16
37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
39 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16
40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
41 H 0.07 1.97 6.77 -51.93 -0.35 1.61 16
42 H 0.03 0.70 7.14 -51.93 -0.37 0.33 16
43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
44 H 0.05 1.16 6.84 -51.93 -0.36 0.81 16
45 H 0.03 0.63 7.12 -51.93 -0.37 0.26 16
46 H 0.14 1.79 7.65 -52.49 -0.40 1.39 16
LS Contribution 359.74 15.07 5.42 5.42
Total: -1.00 -32.57 359.74 -10.27 -42.84
By element:
Atomic # 1 Polarization: 11.71 SS G_CDS: -6.86 Total: 4.85 kcal
Atomic # 6 Polarization: -2.24 SS G_CDS: -3.66 Total: -5.91 kcal
Atomic # 7 Polarization: -53.81 SS G_CDS: -0.22 Total: -54.03 kcal
Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -32.57 -10.27 -42.84 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098713307.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.467 kcal
(2) G-P(sol) polarization free energy of solvation -32.567 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.900 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.626 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds