Wall clock time and date at job start Tue Mar 31 2020 10:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38379 * 119.92662 * 2 1 4 4 C 1.38336 * 120.28792 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14612 * 359.97322 * 4 3 2 6 6 C 1.39555 * 119.85395 * 0.02562 * 5 4 3 7 7 C 1.47849 * 120.14183 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99508 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00327 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99801 * 179.97438 * 9 7 6 11 11 C 1.54181 * 112.24864 * 299.44912 * 10 9 7 12 12 C 1.54850 * 104.29942 * 261.21509 * 11 10 9 13 13 C 1.56227 * 103.17586 * 322.23312 * 12 11 10 14 14 C 1.54176 * 103.64765 * 37.34285 * 13 12 11 15 15 H 1.09000 * 111.62012 * 99.67097 * 14 13 12 16 16 C 1.53794 * 109.12423 * 223.52536 * 14 13 12 17 17 N 1.47227 * 106.35630 * 133.48364 * 16 14 13 18 18 C 1.36939 * 126.70221 * 148.74210 * 17 16 14 19 19 H 1.07998 * 119.99948 * 194.03354 * 18 17 16 20 20 C 1.38812 * 119.99538 * 14.03583 * 18 17 16 21 21 N 1.31619 * 120.00372 * 8.94899 * 20 18 17 22 22 Si 1.86803 * 119.99622 * 188.94919 * 20 18 17 23 23 H 1.48503 * 109.47147 * 94.98135 * 22 20 18 24 24 H 1.48507 * 109.46971 * 214.98137 * 22 20 18 25 25 H 1.48504 * 109.47399 * 334.97866 * 22 20 18 26 26 C 1.47222 * 106.59822 * 328.76925 * 17 16 14 27 27 C 1.37942 * 119.92362 * 180.25464 * 2 1 3 28 28 H 1.09003 * 109.47227 * 89.99683 * 1 2 3 29 29 H 1.08995 * 109.47744 * 210.00138 * 1 2 3 30 30 H 1.09004 * 109.46963 * 330.00646 * 1 2 3 31 31 H 1.07994 * 119.85382 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.92793 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.07408 * 180.02562 * 5 4 3 34 34 H 0.96998 * 120.00037 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.46538 * 19.91789 * 11 10 9 36 36 H 1.09003 * 110.46658 * 142.51281 * 11 10 9 37 37 H 1.08998 * 110.76188 * 80.17573 * 12 11 10 38 38 H 1.09004 * 110.75901 * 203.36871 * 12 11 10 39 39 H 1.08999 * 109.69726 * 279.36004 * 13 12 11 40 40 H 1.09001 * 111.85253 * 156.36066 * 13 12 11 41 41 H 1.09000 * 110.08230 * 252.70482 * 16 14 13 42 42 H 1.09005 * 110.07990 * 14.26481 * 16 14 13 43 43 H 0.96999 * 119.99789 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.07959 * 150.45572 * 26 17 16 45 45 H 1.09001 * 110.07307 * 272.00816 * 26 17 16 46 46 H 1.08001 * 120.07227 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5910 -1.1937 -0.0005 7 6 4.3352 -2.4713 -0.0010 8 8 3.7314 -3.5262 -0.0015 9 7 5.6829 -2.4662 -0.0010 10 6 6.4201 -3.7322 -0.0010 11 6 6.1076 -4.5897 1.2416 12 6 7.2896 -4.3144 2.2034 13 6 8.5168 -4.2189 1.2413 14 6 7.9502 -3.5030 -0.0011 15 1 8.1987 -2.4417 -0.0013 16 6 8.4669 -4.2064 -1.2673 17 7 7.3001 -4.3861 -2.1472 18 6 7.3011 -4.3932 -3.5165 19 1 6.3705 -4.3063 -4.0576 20 6 8.4983 -4.5120 -4.2091 21 7 9.6085 -4.7938 -3.5607 22 14 8.5335 -4.2720 -6.0613 23 1 8.9026 -2.8674 -6.3715 24 1 9.5347 -5.1907 -6.6605 25 1 7.1915 -4.5671 -6.6244 26 6 6.1321 -4.5561 -1.2673 27 6 2.1952 -1.1955 -0.0053 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6539 2.1325 0.0004 32 1 4.1137 2.1474 -0.0001 33 1 5.3612 0.0274 -0.0005 34 1 6.1647 -1.6243 -0.0011 35 1 5.1670 -4.2761 1.6943 36 1 6.0705 -5.6462 0.9761 37 1 7.1482 -3.3700 2.7289 38 1 7.4107 -5.1343 2.9114 39 1 8.8585 -5.2207 0.9812 40 1 9.3301 -3.6390 1.6775 41 1 9.2156 -3.5867 -1.7607 42 1 8.8937 -5.1757 -1.0093 43 1 10.4449 -4.8772 -4.0448 44 1 5.2346 -4.1828 -1.7605 45 1 6.0080 -5.6078 -1.0092 46 1 1.6551 -2.1308 -0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098713307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:58 Heat of formation + Delta-G solvation = -10.782220 kcal Electronic energy + Delta-G solvation = -26670.658094 eV Core-core repulsion = 23138.300963 eV Total energy + Delta-G solvation = -3532.357132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80998 -40.38264 -38.97412 -36.30923 -34.98177 -33.68365 -33.35925 -32.12644 -30.98064 -29.46450 -27.76357 -26.43495 -26.38894 -24.81438 -22.82834 -22.58457 -21.87057 -20.63769 -20.29922 -19.11647 -18.32069 -17.29753 -17.04654 -16.83728 -16.32300 -16.19218 -15.70554 -15.64891 -15.38298 -15.19017 -14.79002 -14.53187 -14.40983 -14.12819 -13.85925 -13.50417 -13.22827 -13.06396 -13.03712 -12.81379 -12.78945 -12.55821 -12.46059 -12.27992 -12.08215 -12.00407 -11.92221 -11.79026 -11.69893 -11.50321 -11.33878 -10.85786 -10.71071 -10.12624 -9.87712 -9.66267 -8.90046 -7.93896 -5.30007 -0.11856 0.39221 1.42346 1.43646 1.53503 1.87169 2.12896 2.45133 2.88446 3.24577 3.38448 3.53703 3.70923 3.81934 3.84871 3.97523 3.98383 4.17253 4.31806 4.38370 4.39324 4.41511 4.44406 4.55980 4.67873 4.70684 4.79366 4.80594 4.83236 4.89632 4.94476 4.99941 5.03168 5.11062 5.19919 5.24709 5.26426 5.35824 5.40029 5.43520 5.44941 5.55117 5.58233 5.65674 5.71918 5.97444 6.16764 6.56466 7.03203 7.22543 7.67849 8.40755 9.18350 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.004183 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.904874 B = 6692.562180 C = 8035.933063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.094 4.094 4 C -0.121 4.121 5 C -0.096 4.096 6 C -0.148 4.148 7 C 0.551 3.449 8 O -0.574 6.574 9 N -0.692 5.692 10 C 0.173 3.827 11 C -0.114 4.114 12 C -0.108 4.108 13 C -0.108 4.108 14 C -0.105 4.105 15 H 0.094 0.906 16 C 0.180 3.820 17 N -0.616 5.616 18 C -0.249 4.249 19 H 0.065 0.935 20 C -0.053 4.053 21 N -0.941 5.941 22 Si 0.977 3.023 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.275 1.275 26 C 0.137 3.863 27 C -0.084 4.084 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.409 0.591 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.045 0.955 42 H 0.001 0.999 43 H 0.252 0.748 44 H 0.024 0.976 45 H 0.009 0.991 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 14.612 13.561 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.112 4.112 4 C -0.138 4.138 5 C -0.115 4.115 6 C -0.151 4.151 7 C 0.340 3.660 8 O -0.455 6.455 9 N -0.343 5.343 10 C 0.085 3.915 11 C -0.153 4.153 12 C -0.145 4.145 13 C -0.146 4.146 14 C -0.125 4.125 15 H 0.112 0.888 16 C 0.054 3.946 17 N -0.340 5.340 18 C -0.378 4.378 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.588 5.588 22 Si 0.805 3.195 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.200 1.200 26 C 0.010 3.990 27 C -0.103 4.103 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.247 0.753 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.019 0.981 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.027 0.973 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.347 13.823 13.360 22.323 hybrid contribution 0.447 -0.360 -1.521 1.626 sum -10.900 13.464 11.839 20.981 Atomic orbital electron populations 1.20853 0.88943 1.03934 1.03210 1.20217 0.97832 0.92332 0.99715 1.21658 0.94517 0.98324 0.96673 1.21481 0.94634 0.98435 0.99276 1.21548 1.00756 0.91561 0.97646 1.19953 0.94706 0.92660 1.07796 1.18739 0.82322 0.89417 0.75499 1.90726 1.69245 1.33995 1.51536 1.45775 1.05567 1.09108 1.73886 1.21440 0.91414 0.84025 0.94619 1.22566 0.99467 0.98636 0.94618 1.22700 0.92486 1.02707 0.96621 1.22652 0.98083 1.00174 0.93651 1.22908 0.91924 1.00911 0.96760 0.88827 1.21185 0.89511 0.95910 0.87967 1.44802 1.03821 1.84142 1.01280 1.19278 0.93542 1.43656 0.81356 0.91713 1.25632 0.95511 1.01141 1.02411 1.70109 0.98887 1.54110 1.35715 0.85101 0.77306 0.77529 0.79606 1.20743 1.21505 1.19988 1.21727 0.90269 0.95741 0.91290 1.21212 0.92656 0.98978 0.97437 0.90454 0.91537 0.89203 0.82413 0.82279 0.84288 0.75340 0.91592 0.92142 0.90039 0.89799 0.92516 0.88800 0.93693 0.98060 0.93929 0.95781 0.97283 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 2 C -0.10 -1.95 5.87 -19.90 -0.12 -2.06 16 3 C -0.09 -1.44 9.69 22.33 0.22 -1.22 16 4 C -0.12 -1.93 10.03 22.23 0.22 -1.71 16 5 C -0.10 -2.05 9.54 22.53 0.21 -1.83 16 6 C -0.15 -4.16 5.87 -20.09 -0.12 -4.28 16 7 C 0.55 19.18 6.78 86.79 0.59 19.76 16 8 O -0.57 -24.11 13.92 -3.89 -0.05 -24.16 16 9 N -0.69 -22.49 5.19 -420.11 -2.18 -24.67 16 10 C 0.17 6.41 0.93 4.85 0.00 6.41 16 11 C -0.11 -3.76 5.66 31.63 0.18 -3.58 16 12 C -0.11 -2.70 6.92 32.35 0.22 -2.48 16 13 C -0.11 -3.09 6.48 32.11 0.21 -2.89 16 14 C -0.10 -3.76 3.62 -9.55 -0.03 -3.79 16 15 H 0.09 2.97 7.69 -2.39 -0.02 2.95 16 16 C 0.18 8.84 5.17 86.51 0.45 9.29 16 17 N -0.62 -33.74 3.39 -695.22 -2.35 -36.10 16 18 C -0.25 -14.86 10.28 84.03 0.86 -13.99 16 19 H 0.07 3.86 7.84 -2.91 -0.02 3.83 16 20 C -0.05 -3.07 5.39 84.86 0.46 -2.61 16 21 N -0.94 -56.76 10.84 21.65 0.23 -56.53 16 22 Si 0.98 46.75 29.56 68.60 2.03 48.78 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 26 C 0.14 6.61 6.02 86.51 0.52 7.14 16 27 C -0.08 -2.20 9.24 22.53 0.21 -2.00 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.92 8.08 -2.39 -0.02 0.91 16 30 H 0.09 0.80 8.08 -2.38 -0.02 0.78 16 31 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.14 2.45 6.41 -2.91 -0.02 2.43 16 34 H 0.41 10.83 6.32 -92.71 -0.59 10.25 16 35 H 0.07 2.23 6.69 -2.39 -0.02 2.21 16 36 H 0.06 2.16 7.17 -2.39 -0.02 2.14 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.06 1.82 7.18 -2.39 -0.02 1.81 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.04 2.45 6.77 -2.39 -0.02 2.43 16 42 H 0.00 0.08 7.14 -2.38 -0.02 0.06 16 43 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.02 1.25 6.84 -2.39 -0.02 1.23 16 45 H 0.01 0.48 7.12 -2.39 -0.02 0.46 16 46 H 0.12 3.38 7.65 -2.91 -0.02 3.35 16 Total: -1.00 -75.41 359.74 2.87 -72.53 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.40 Total: 20.79 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 4.80 Total: -0.65 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -4.30 Total: -117.29 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -75.41 2.87 -72.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098713307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.751 kcal (2) G-P(sol) polarization free energy of solvation -75.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds