Wall clock time and date at job start Tue Mar 31 2020 10:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 102.99894 * 2 1 4 4 C 1.52995 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47155 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99842 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99702 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99993 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47195 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.58612 * 300.29607 * 9 8 7 11 11 C 1.53196 * 109.58409 * 180.02562 * 9 8 7 12 12 C 1.53036 * 109.31248 * 185.57717 * 11 9 8 13 13 C 1.53043 * 109.53658 * 61.36832 * 12 11 9 14 14 C 1.52996 * 109.49845 * 58.58563 * 13 12 11 15 15 C 1.53001 * 109.49613 * 178.68317 * 13 12 11 16 16 C 1.53192 * 109.31326 * 298.63278 * 13 12 11 17 17 N 1.46925 * 108.77445 * 54.63369 * 16 13 12 18 18 C 1.36935 * 120.63018 * 126.38674 * 17 16 13 19 19 H 1.08002 * 120.00566 * 210.95192 * 18 17 16 20 20 C 1.38819 * 119.99768 * 30.95900 * 18 17 16 21 21 N 1.31624 * 120.00022 * 14.16903 * 20 18 17 22 22 Si 1.86797 * 120.00107 * 194.17205 * 20 18 17 23 23 H 1.48504 * 109.47114 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47225 * 119.99458 * 22 20 18 25 25 H 1.48501 * 109.47149 * 240.00073 * 22 20 18 26 26 H 1.08992 * 109.46894 * 60.00542 * 1 2 3 27 27 H 1.09011 * 109.46663 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47401 * 299.99750 * 1 2 3 29 29 H 1.09006 * 109.47172 * 59.99728 * 3 2 1 30 30 H 1.09006 * 109.46947 * 300.00208 * 3 2 1 31 31 H 1.09007 * 109.46891 * 299.99486 * 4 3 2 32 32 H 1.08996 * 109.47238 * 59.99777 * 4 3 2 33 33 H 0.97003 * 120.00328 * 359.97438 * 7 5 4 34 34 H 1.09006 * 109.47156 * 300.00662 * 8 7 5 35 35 H 1.09006 * 109.46772 * 60.00065 * 8 7 5 36 36 H 1.09000 * 109.49832 * 305.53160 * 11 9 8 37 37 H 1.09001 * 109.49396 * 65.62976 * 11 9 8 38 38 H 1.08997 * 109.46098 * 181.38537 * 12 11 9 39 39 H 1.09004 * 109.46016 * 301.34888 * 12 11 9 40 40 H 1.09008 * 109.46878 * 59.99866 * 14 13 12 41 41 H 1.09003 * 109.47290 * 179.97438 * 14 13 12 42 42 H 1.09003 * 109.47249 * 300.00050 * 14 13 12 43 43 H 1.09006 * 109.47190 * 59.99651 * 15 13 12 44 44 H 1.09002 * 109.47036 * 179.97438 * 15 13 12 45 45 H 1.08997 * 109.47268 * 299.99705 * 15 13 12 46 46 H 1.08997 * 109.58838 * 174.42174 * 16 13 12 47 47 H 1.09000 * 109.58480 * 294.71075 * 16 13 12 48 48 H 0.96995 * 119.99928 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0812 3.4085 0.0000 6 8 3.1942 4.2356 0.0004 7 7 5.3700 3.8025 0.0001 8 6 5.6996 5.2300 0.0002 9 6 7.2199 5.4024 -0.0004 10 1 7.6416 4.9287 0.8861 11 6 7.5674 6.8944 0.0003 12 6 9.0821 7.0613 -0.1406 13 6 9.5419 6.4589 -1.4702 14 6 8.8149 7.1529 -2.6238 15 6 11.0513 6.6554 -1.6250 16 6 9.2168 4.9620 -1.4876 17 7 7.7851 4.7858 -1.2083 18 6 6.9926 4.0607 -2.0576 19 1 5.9487 4.3138 -2.1704 20 6 7.5309 3.0002 -2.7736 21 7 8.7075 2.5121 -2.4419 22 14 6.5857 2.2660 -4.2077 23 1 5.2995 2.9892 -4.3749 24 1 7.3905 2.3951 -5.4490 25 1 6.3159 0.8305 -3.9397 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8031 2.2372 0.8900 30 1 1.8031 2.2371 -0.8900 31 1 4.1616 1.4704 0.8892 32 1 4.1608 1.4705 -0.8908 33 1 6.0795 3.1409 0.0001 34 1 5.2807 5.6996 -0.8898 35 1 5.2806 5.6995 0.8902 36 1 7.0681 7.3847 -0.8354 37 1 7.2374 7.3443 0.9367 38 1 9.3345 8.1214 -0.1156 39 1 9.5819 6.5497 0.6820 40 1 9.0443 8.2184 -2.6092 41 1 9.1430 6.7238 -3.5706 42 1 7.7398 7.0111 -2.5134 43 1 11.5685 6.1595 -0.8035 44 1 11.3784 6.2259 -2.5719 45 1 11.2825 7.7205 -1.6097 46 1 9.4512 4.5485 -2.4685 47 1 9.8054 4.4513 -0.7255 48 1 9.0834 1.7709 -2.9420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098873054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:47 Heat of formation + Delta-G solvation = -35.924499 kcal Electronic energy + Delta-G solvation = -25705.800208 eV Core-core repulsion = 22307.796776 eV Total energy + Delta-G solvation = -3398.003431 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.39344 -38.44304 -35.14189 -33.21242 -32.72740 -32.02133 -30.01037 -29.08103 -27.60434 -26.61997 -25.50166 -24.66231 -22.81223 -22.19340 -20.12924 -19.57685 -17.91986 -17.06467 -16.34480 -15.83826 -15.68491 -15.30810 -15.18550 -14.19793 -14.04101 -13.95436 -13.76723 -13.69114 -13.47354 -13.30843 -13.16723 -12.89732 -12.43969 -12.28809 -12.18512 -11.83999 -11.66765 -11.43723 -11.29854 -11.17145 -11.15796 -10.88224 -10.79624 -10.61020 -10.41447 -10.12667 -10.07392 -10.03149 -9.81229 -9.50240 -9.37348 -9.20957 -8.59577 -8.24262 -7.73016 -6.66489 -5.85918 -3.31891 1.60250 2.54171 3.16911 3.31016 3.41557 3.43810 3.90336 4.41533 4.89135 5.01061 5.03393 5.05441 5.17921 5.28351 5.36789 5.44245 5.48537 5.55262 5.59767 5.69292 5.75083 5.85621 5.89114 6.01204 6.02121 6.10040 6.16548 6.22847 6.32202 6.36046 6.44378 6.46854 6.47102 6.51765 6.64571 6.89693 6.92847 7.00969 7.11107 7.16843 7.36908 7.64955 7.77995 8.22847 8.38918 8.82898 9.14590 9.76206 10.34391 11.20706 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.003957 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.791711 B = 7075.084114 C = 8211.162766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.272 6.272 3 C -0.061 4.061 4 C -0.127 4.127 5 C 0.514 3.486 6 O -0.568 6.568 7 N -0.691 5.691 8 C 0.135 3.865 9 C 0.161 3.839 10 H 0.031 0.969 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.095 4.095 14 C -0.124 4.124 15 C -0.133 4.133 16 C 0.187 3.813 17 N -0.585 5.585 18 C -0.249 4.249 19 H 0.070 0.930 20 C 0.010 3.990 21 N -0.897 5.897 22 Si 0.888 3.112 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.288 1.288 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.416 0.584 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.030 0.970 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.017 0.983 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 1.653 5.558 7.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.046 6.046 3 C -0.209 4.209 4 C -0.168 4.168 5 C 0.298 3.702 6 O -0.449 6.449 7 N -0.341 5.341 8 C 0.011 3.989 9 C 0.054 3.946 10 H 0.048 0.952 11 C -0.170 4.170 12 C -0.133 4.133 13 C -0.097 4.097 14 C -0.181 4.181 15 C -0.191 4.191 16 C 0.062 3.938 17 N -0.308 5.308 18 C -0.379 4.379 19 H 0.087 0.913 20 C -0.189 4.189 21 N -0.541 5.541 22 Si 0.717 3.283 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.215 1.215 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.254 0.746 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.035 0.965 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.356 1.201 5.481 7.757 hybrid contribution -0.792 0.250 -0.920 1.240 sum -6.148 1.451 4.561 7.791 Atomic orbital electron populations 1.23341 0.94269 1.06220 1.04946 1.86866 1.07296 1.12287 1.98138 1.23085 0.98926 0.92697 1.06226 1.21333 0.94515 0.95154 1.05768 1.20249 0.83127 0.90210 0.76615 1.90634 1.47415 1.54739 1.52132 1.45980 1.07090 1.09204 1.71842 1.21285 0.95608 0.81440 1.00589 1.20721 0.90740 0.92125 0.91053 0.95163 1.22009 0.96519 0.97905 1.00549 1.21408 0.95598 0.98890 0.97419 1.21245 0.93679 1.00379 0.94389 1.21702 1.01665 0.97269 0.97507 1.21758 0.96239 0.99890 1.01242 1.20797 0.83695 0.87985 1.01356 1.44035 1.05747 1.59406 1.21621 1.19199 0.93971 1.07020 1.17698 0.91268 1.25044 0.97227 0.96434 1.00237 1.70007 1.18038 1.25967 1.40129 0.86446 0.79652 0.78994 0.83163 1.20237 1.21595 1.21469 0.90494 0.88251 0.90556 0.89443 0.89348 0.88352 0.87812 0.74625 0.91647 0.92812 0.91649 0.93177 0.93670 0.92949 0.95071 0.93662 0.91586 0.93337 0.93053 0.93977 0.89664 0.96480 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.76 101.05 1.09 -0.03 16 2 S -0.27 -3.52 22.38 -107.50 -2.41 -5.92 16 3 C -0.06 -0.84 5.23 37.15 0.19 -0.65 16 4 C -0.13 -1.89 5.71 -27.88 -0.16 -2.05 16 5 C 0.51 9.21 7.83 -10.98 -0.09 9.13 16 6 O -0.57 -11.63 15.98 5.56 0.09 -11.54 16 7 N -0.69 -12.62 3.86 -60.29 -0.23 -12.85 16 8 C 0.13 2.46 4.43 -4.04 -0.02 2.44 16 9 C 0.16 2.97 3.00 -67.60 -0.20 2.76 16 10 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 11 C -0.13 -2.11 5.03 -26.61 -0.13 -2.24 16 12 C -0.10 -1.52 4.71 -26.69 -0.13 -1.65 16 13 C -0.10 -1.67 0.77 -154.39 -0.12 -1.79 16 14 C -0.12 -2.18 7.99 37.16 0.30 -1.89 16 15 C -0.13 -2.08 8.48 37.16 0.32 -1.76 16 16 C 0.19 4.04 3.95 -3.71 -0.01 4.02 16 17 N -0.58 -12.64 2.41 -164.78 -0.40 -13.04 16 18 C -0.25 -5.94 7.01 -15.06 -0.11 -6.04 16 19 H 0.07 1.72 5.85 -52.49 -0.31 1.41 16 20 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 21 N -0.90 -23.68 11.23 55.49 0.62 -23.06 16 22 Si 0.89 20.66 29.58 -169.99 -5.03 15.63 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.18 8.10 -51.92 -0.42 0.76 16 30 H 0.09 1.29 8.10 -51.92 -0.42 0.87 16 31 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.42 7.91 7.44 -40.82 -0.30 7.61 16 34 H 0.07 1.32 7.39 -51.93 -0.38 0.93 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.10 6.34 -51.93 -0.33 0.77 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.03 0.48 8.14 -51.92 -0.42 0.05 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.26 5.97 -51.93 -0.31 0.95 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 2.11 6.19 -51.93 -0.32 1.79 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -26.99 380.58 -9.47 -36.46 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.70 Total: 8.17 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 0.84 Total: 0.42 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.01 Total: -48.95 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.41 Total: -5.92 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -26.99 -9.47 -36.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098873054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.531 kcal (2) G-P(sol) polarization free energy of solvation -26.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds