Wall clock time and date at job start Tue Mar 31 2020 10:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 102.99894 * 2 1 4 4 C 1.52995 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47155 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99842 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99702 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99993 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47195 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.58612 * 300.29607 * 9 8 7 11 11 C 1.53196 * 109.58409 * 180.02562 * 9 8 7 12 12 C 1.53036 * 109.31248 * 185.57717 * 11 9 8 13 13 C 1.53043 * 109.53658 * 61.36832 * 12 11 9 14 14 C 1.52996 * 109.49845 * 58.58563 * 13 12 11 15 15 C 1.53001 * 109.49613 * 178.68317 * 13 12 11 16 16 C 1.53192 * 109.31326 * 298.63278 * 13 12 11 17 17 N 1.46925 * 108.77445 * 54.63369 * 16 13 12 18 18 C 1.36935 * 120.63018 * 126.38674 * 17 16 13 19 19 H 1.08002 * 120.00566 * 210.95192 * 18 17 16 20 20 C 1.38819 * 119.99768 * 30.95900 * 18 17 16 21 21 N 1.31624 * 120.00022 * 14.16903 * 20 18 17 22 22 Si 1.86797 * 120.00107 * 194.17205 * 20 18 17 23 23 H 1.48504 * 109.47114 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47225 * 119.99458 * 22 20 18 25 25 H 1.48501 * 109.47149 * 240.00073 * 22 20 18 26 26 H 1.08992 * 109.46894 * 60.00542 * 1 2 3 27 27 H 1.09011 * 109.46663 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47401 * 299.99750 * 1 2 3 29 29 H 1.09006 * 109.47172 * 59.99728 * 3 2 1 30 30 H 1.09006 * 109.46947 * 300.00208 * 3 2 1 31 31 H 1.09007 * 109.46891 * 299.99486 * 4 3 2 32 32 H 1.08996 * 109.47238 * 59.99777 * 4 3 2 33 33 H 0.97003 * 120.00328 * 359.97438 * 7 5 4 34 34 H 1.09006 * 109.47156 * 300.00662 * 8 7 5 35 35 H 1.09006 * 109.46772 * 60.00065 * 8 7 5 36 36 H 1.09000 * 109.49832 * 305.53160 * 11 9 8 37 37 H 1.09001 * 109.49396 * 65.62976 * 11 9 8 38 38 H 1.08997 * 109.46098 * 181.38537 * 12 11 9 39 39 H 1.09004 * 109.46016 * 301.34888 * 12 11 9 40 40 H 1.09008 * 109.46878 * 59.99866 * 14 13 12 41 41 H 1.09003 * 109.47290 * 179.97438 * 14 13 12 42 42 H 1.09003 * 109.47249 * 300.00050 * 14 13 12 43 43 H 1.09006 * 109.47190 * 59.99651 * 15 13 12 44 44 H 1.09002 * 109.47036 * 179.97438 * 15 13 12 45 45 H 1.08997 * 109.47268 * 299.99705 * 15 13 12 46 46 H 1.08997 * 109.58838 * 174.42174 * 16 13 12 47 47 H 1.09000 * 109.58480 * 294.71075 * 16 13 12 48 48 H 0.96995 * 119.99928 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0812 3.4085 0.0000 6 8 3.1942 4.2356 0.0004 7 7 5.3700 3.8025 0.0001 8 6 5.6996 5.2300 0.0002 9 6 7.2199 5.4024 -0.0004 10 1 7.6416 4.9287 0.8861 11 6 7.5674 6.8944 0.0003 12 6 9.0821 7.0613 -0.1406 13 6 9.5419 6.4589 -1.4702 14 6 8.8149 7.1529 -2.6238 15 6 11.0513 6.6554 -1.6250 16 6 9.2168 4.9620 -1.4876 17 7 7.7851 4.7858 -1.2083 18 6 6.9926 4.0607 -2.0576 19 1 5.9487 4.3138 -2.1704 20 6 7.5309 3.0002 -2.7736 21 7 8.7075 2.5121 -2.4419 22 14 6.5857 2.2660 -4.2077 23 1 5.2995 2.9892 -4.3749 24 1 7.3905 2.3951 -5.4490 25 1 6.3159 0.8305 -3.9397 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8031 2.2372 0.8900 30 1 1.8031 2.2371 -0.8900 31 1 4.1616 1.4704 0.8892 32 1 4.1608 1.4705 -0.8908 33 1 6.0795 3.1409 0.0001 34 1 5.2807 5.6996 -0.8898 35 1 5.2806 5.6995 0.8902 36 1 7.0681 7.3847 -0.8354 37 1 7.2374 7.3443 0.9367 38 1 9.3345 8.1214 -0.1156 39 1 9.5819 6.5497 0.6820 40 1 9.0443 8.2184 -2.6092 41 1 9.1430 6.7238 -3.5706 42 1 7.7398 7.0111 -2.5134 43 1 11.5685 6.1595 -0.8035 44 1 11.3784 6.2259 -2.5719 45 1 11.2825 7.7205 -1.6097 46 1 9.4512 4.5485 -2.4685 47 1 9.8054 4.4513 -0.7255 48 1 9.0834 1.7709 -2.9420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098873054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:46 Heat of formation + Delta-G solvation = -49.232300 kcal Electronic energy + Delta-G solvation = -25706.377277 eV Core-core repulsion = 22307.796776 eV Total energy + Delta-G solvation = -3398.580501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.89405 -39.93633 -36.64582 -34.97458 -34.05218 -33.44277 -31.72658 -29.85273 -28.99772 -28.00943 -27.30557 -25.97498 -24.35091 -23.64938 -21.69756 -21.02396 -19.45348 -18.57398 -17.82286 -17.34436 -16.95376 -16.70565 -16.63277 -15.93064 -15.54778 -15.33228 -15.05589 -14.92257 -14.71854 -14.57882 -14.44888 -14.16341 -13.82887 -13.75370 -13.49513 -13.11785 -12.99173 -12.84209 -12.83140 -12.73762 -12.51124 -12.48848 -12.38262 -12.18467 -12.10351 -11.85080 -11.61433 -11.25361 -11.02672 -11.01045 -10.88753 -10.72767 -10.46825 -9.81526 -8.74657 -8.49770 -7.78992 -5.24533 0.61911 1.40078 1.48276 1.52721 1.60567 1.71869 2.47508 2.53713 3.36033 3.61706 3.71330 3.90138 4.00599 4.03416 4.05688 4.21676 4.31392 4.34351 4.34412 4.44116 4.51246 4.54650 4.67776 4.71349 4.78132 4.84078 4.86400 4.88245 4.94802 4.97284 5.06974 5.11528 5.15182 5.17926 5.27100 5.41110 5.50466 5.55559 5.60830 5.68344 5.75699 5.83911 5.90973 6.48712 6.72756 7.24070 7.34638 7.93701 8.47039 9.25081 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.003957 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.791711 B = 7075.084114 C = 8211.162766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.304 6.304 3 C -0.052 4.052 4 C -0.120 4.120 5 C 0.513 3.487 6 O -0.593 6.593 7 N -0.694 5.694 8 C 0.140 3.860 9 C 0.161 3.839 10 H 0.030 0.970 11 C -0.125 4.125 12 C -0.091 4.091 13 C -0.093 4.093 14 C -0.117 4.117 15 C -0.129 4.129 16 C 0.196 3.804 17 N -0.595 5.595 18 C -0.226 4.226 19 H 0.061 0.939 20 C -0.030 4.030 21 N -0.923 5.923 22 Si 0.929 3.071 23 H -0.280 1.280 24 H -0.299 1.299 25 H -0.290 1.290 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.412 0.588 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.048 0.952 47 H -0.006 1.006 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.145 2.939 6.790 9.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.078 6.078 3 C -0.200 4.200 4 C -0.161 4.161 5 C 0.298 3.702 6 O -0.476 6.476 7 N -0.343 5.343 8 C 0.016 3.984 9 C 0.055 3.945 10 H 0.048 0.952 11 C -0.164 4.164 12 C -0.129 4.129 13 C -0.094 4.094 14 C -0.174 4.174 15 C -0.186 4.186 16 C 0.070 3.930 17 N -0.319 5.319 18 C -0.357 4.357 19 H 0.078 0.922 20 C -0.227 4.227 21 N -0.570 5.570 22 Si 0.760 3.240 23 H -0.205 1.205 24 H -0.226 1.226 25 H -0.217 1.217 26 H 0.101 0.899 27 H 0.136 0.864 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.249 0.751 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.012 0.988 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.025 2.505 6.723 9.369 hybrid contribution -0.654 -0.132 -1.272 1.436 sum -6.679 2.373 5.451 8.942 Atomic orbital electron populations 1.23442 0.90697 1.07699 1.05880 1.86955 1.11287 1.11396 1.98212 1.22934 0.97881 0.93401 1.05817 1.21306 0.95613 0.92904 1.06248 1.20710 0.82538 0.91290 0.75613 1.90615 1.47939 1.55773 1.53281 1.46039 1.07258 1.09198 1.71825 1.21247 0.95359 0.81465 1.00353 1.20862 0.90626 0.93655 0.89392 0.95198 1.21955 0.96897 0.95671 1.01871 1.21387 0.95118 1.00372 0.95984 1.21157 0.95274 0.97211 0.95767 1.21621 1.00275 0.98892 0.96656 1.21708 0.94478 1.01585 1.00863 1.20575 0.83332 0.90683 0.98387 1.44186 1.05688 1.59321 1.22668 1.19170 0.93572 1.05975 1.16937 0.92155 1.25407 0.97867 0.97418 1.01978 1.70109 1.19158 1.26638 1.41057 0.85784 0.78487 0.78324 0.81364 1.20522 1.22612 1.21688 0.89898 0.86449 0.89311 0.89092 0.90449 0.86506 0.88554 0.75086 0.93749 0.91032 0.92177 0.90297 0.90891 0.92781 0.92222 0.95291 0.93463 0.93070 0.94057 0.91321 0.93375 0.98781 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.76 113.37 1.22 -0.58 16 2 S -0.30 -7.53 22.38 -56.49 -1.26 -8.79 16 3 C -0.05 -1.40 5.23 71.98 0.38 -1.02 16 4 C -0.12 -3.54 5.71 29.85 0.17 -3.37 16 5 C 0.51 18.27 7.83 87.66 0.69 18.95 16 6 O -0.59 -24.10 15.98 -3.04 -0.05 -24.15 16 7 N -0.69 -25.26 3.86 -463.04 -1.79 -27.05 16 8 C 0.14 5.00 4.43 86.38 0.38 5.38 16 9 C 0.16 5.77 3.00 44.98 0.14 5.91 16 10 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 11 C -0.12 -3.71 5.03 30.67 0.15 -3.55 16 12 C -0.09 -2.62 4.71 30.62 0.14 -2.48 16 13 C -0.09 -3.12 0.77 -52.10 -0.04 -3.16 16 14 C -0.12 -3.96 7.99 71.98 0.57 -3.38 16 15 C -0.13 -3.76 8.48 71.98 0.61 -3.15 16 16 C 0.20 8.55 3.95 86.36 0.34 8.89 16 17 N -0.59 -25.89 2.41 -675.23 -1.63 -27.51 16 18 C -0.23 -10.94 7.01 84.04 0.59 -10.35 16 19 H 0.06 3.04 5.85 -2.91 -0.02 3.02 16 20 C -0.03 -1.56 4.96 84.86 0.42 -1.14 16 21 N -0.92 -50.28 11.23 21.65 0.24 -50.03 16 22 Si 0.93 43.53 29.58 68.60 2.03 45.56 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.09 2.37 8.10 -2.39 -0.02 2.35 16 30 H 0.08 2.24 8.10 -2.39 -0.02 2.22 16 31 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 32 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.41 15.76 7.44 -92.71 -0.69 15.08 16 34 H 0.04 1.78 7.39 -2.38 -0.02 1.76 16 35 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.06 1.89 6.34 -2.39 -0.02 1.87 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 1.76 5.97 -2.39 -0.01 1.75 16 43 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.05 2.46 6.19 -2.39 -0.01 2.45 16 47 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -59.08 380.58 3.54 -55.54 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.23 Total: 29.49 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 5.76 Total: 6.95 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -3.17 Total: -104.60 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.26 Total: -8.79 kcal Total: -59.08 3.54 -55.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098873054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.309 kcal (2) G-P(sol) polarization free energy of solvation -59.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds