Wall clock time and date at job start Tue Mar 31 2020 11:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.50696 * 120.00202 * 2 1 4 4 C 1.50705 * 109.47169 * 94.39050 * 3 2 1 5 5 C 1.38239 * 119.99895 * 265.38660 * 4 3 2 6 6 C 1.38236 * 120.00035 * 179.76467 * 5 4 3 7 7 C 1.38235 * 119.99535 * 0.50658 * 6 5 4 8 8 C 1.38233 * 120.00284 * 359.75042 * 7 6 5 9 9 C 1.38230 * 120.00148 * 85.65945 * 4 3 2 10 10 C 1.47109 * 119.99973 * 180.02562 * 2 1 3 11 11 O 1.21615 * 119.99792 * 256.12130 * 10 2 1 12 12 N 1.34776 * 119.99913 * 76.40329 * 10 2 1 13 13 C 1.47079 * 120.88196 * 4.19009 * 12 10 2 14 14 C 1.53692 * 108.27748 * 128.76059 * 13 12 10 15 15 N 1.46898 * 109.25619 * 54.08174 * 14 13 12 16 16 C 1.46902 * 110.99590 * 172.61065 * 15 14 13 17 17 C 1.50695 * 109.47080 * 294.29937 * 16 15 14 18 18 H 1.08006 * 120.00293 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00300 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99523 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00409 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46770 * 59.99798 * 21 19 17 23 23 H 1.48497 * 109.46872 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47118 * 299.99904 * 21 19 17 25 25 C 1.46895 * 111.26780 * 296.75774 * 15 14 13 26 26 C 1.47078 * 120.88187 * 184.47517 * 12 10 2 27 27 H 1.07992 * 120.00204 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99658 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47288 * 214.39086 * 3 2 1 30 30 H 1.09000 * 109.47145 * 334.39189 * 3 2 1 31 31 H 1.08001 * 119.99666 * 359.97438 * 5 4 3 32 32 H 1.07993 * 120.00071 * 180.23382 * 6 5 4 33 33 H 1.07998 * 119.99532 * 179.72405 * 7 6 5 34 34 H 1.07999 * 120.00113 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.00021 * 359.97438 * 9 4 3 36 36 H 1.09003 * 109.62823 * 248.53046 * 13 12 10 37 37 H 1.09000 * 109.62785 * 9.10478 * 13 12 10 38 38 H 1.09003 * 109.64471 * 294.08050 * 14 13 12 39 39 H 1.09003 * 109.42214 * 173.94857 * 14 13 12 40 40 H 1.08994 * 109.47730 * 54.30362 * 16 15 14 41 41 H 1.09005 * 109.47038 * 174.30374 * 16 15 14 42 42 H 0.97000 * 119.99552 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.49863 * 303.14171 * 25 15 14 44 44 H 1.09004 * 109.48934 * 183.06429 * 25 15 14 45 45 H 1.09004 * 109.62853 * 350.89169 * 26 12 10 46 46 H 1.08998 * 109.62940 * 111.47173 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0834 1.3050 0.0000 4 6 2.4288 1.6857 1.4167 5 6 1.6001 2.5351 2.1258 6 6 1.9144 2.8804 3.4269 7 6 3.0628 2.3847 4.0153 8 6 3.8942 1.5395 3.3045 9 6 3.5772 1.1900 2.0052 10 6 2.0655 -1.2740 -0.0006 11 8 2.5883 -1.6747 1.0217 12 7 2.1647 -1.9943 -1.1354 13 6 1.6247 -1.4824 -2.4041 14 6 2.7266 -1.5796 -3.4711 15 7 3.2309 -2.9584 -3.5226 16 6 4.1601 -3.1374 -4.6463 17 6 3.4149 -2.9716 -5.9455 18 1 2.3569 -2.7545 -5.9375 19 6 4.0836 -3.0970 -7.1448 20 7 5.3721 -3.3609 -7.1546 21 14 3.1601 -2.8908 -8.7554 22 1 2.5677 -1.5304 -8.8155 23 1 4.0994 -3.0719 -9.8912 24 1 2.0792 -3.9056 -8.8396 25 6 3.8605 -3.3432 -2.2524 26 6 2.8105 -3.3157 -1.1367 27 1 -0.5400 0.9352 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 2.9995 1.1957 -0.5804 30 1 1.4626 2.0831 -0.4442 31 1 0.7054 2.9262 1.6643 32 1 1.2650 3.5409 3.9821 33 1 3.3106 2.6580 5.0303 34 1 4.7917 1.1526 3.7641 35 1 4.2268 0.5296 1.4498 36 1 0.7656 -2.0821 -2.7049 37 1 1.3234 -0.4422 -2.2806 38 1 3.5428 -0.9030 -3.2177 39 1 2.3153 -1.3062 -4.4428 40 1 4.9529 -2.3920 -4.5845 41 1 4.5956 -4.1356 -4.6021 42 1 5.8426 -3.4487 -7.9983 43 1 4.6609 -2.6422 -2.0160 44 1 4.2715 -4.3490 -2.3403 45 1 3.2936 -3.4882 -0.1749 46 1 2.0632 -4.0882 -1.3180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144396159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:29 Heat of formation + Delta-G solvation = 16.980071 kcal Electronic energy + Delta-G solvation = -25842.540509 eV Core-core repulsion = 22311.387241 eV Total energy + Delta-G solvation = -3531.153268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23546 -39.22949 -37.52233 -35.19835 -34.33319 -32.45234 -31.47215 -30.97870 -30.61731 -28.24734 -26.74592 -25.71500 -23.56316 -23.08972 -22.58200 -21.75578 -21.30625 -19.95049 -18.19903 -17.09083 -16.46442 -16.40828 -15.97954 -15.53910 -15.18793 -15.00126 -14.77267 -14.47830 -14.23410 -13.92148 -13.71497 -13.49289 -13.48207 -13.39673 -12.78970 -12.60943 -12.35938 -12.28837 -11.95772 -11.84785 -11.33704 -11.30265 -11.10281 -11.07546 -10.97589 -10.77577 -10.63491 -10.56471 -9.91593 -9.82967 -9.38577 -9.30662 -8.99513 -8.78975 -8.52715 -8.44456 -7.35775 -6.08517 -4.10834 1.19723 1.33198 1.72252 2.67355 3.17031 3.29021 3.33960 3.36026 3.70281 4.36382 4.44015 4.69736 4.74748 4.78284 4.82046 4.90482 5.01544 5.15335 5.25931 5.29508 5.38073 5.39998 5.43692 5.52562 5.55910 5.58563 5.63910 5.74130 5.84168 5.87605 5.94969 6.01144 6.13391 6.24671 6.26886 6.34764 6.42554 6.42889 6.45080 6.54931 6.67345 6.91258 7.19280 7.25252 7.52139 7.71345 7.98802 8.09383 8.22794 8.44629 8.95997 9.53728 11.02245 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.002734 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.671150 B =10240.583622 C =10428.381540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C -0.036 4.036 4 C -0.076 4.076 5 C -0.115 4.115 6 C -0.125 4.125 7 C -0.125 4.125 8 C -0.119 4.119 9 C -0.093 4.093 10 C 0.551 3.449 11 O -0.541 6.541 12 N -0.602 5.602 13 C 0.110 3.890 14 C 0.051 3.949 15 N -0.536 5.536 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.042 3.958 26 C 0.117 3.883 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.025 0.975 39 H 0.097 0.903 40 H -0.009 1.009 41 H 0.032 0.968 42 H 0.262 0.738 43 H 0.026 0.974 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 11.072 17.464 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C -0.073 4.073 4 C -0.076 4.076 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.143 4.143 8 C -0.137 4.137 9 C -0.111 4.111 10 C 0.339 3.661 11 O -0.418 6.418 12 N -0.335 5.335 13 C -0.012 4.012 14 C -0.078 4.078 15 N -0.261 5.261 16 C 0.069 3.931 17 C -0.549 4.549 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.088 4.088 26 C -0.005 4.005 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.115 0.885 40 H 0.009 0.991 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.300 10.498 17.785 22.258 hybrid contribution 0.318 0.497 -0.885 1.064 sum -7.982 10.996 16.900 21.685 Atomic orbital electron populations 1.24286 0.93967 1.02881 0.97021 1.21428 0.95549 0.94102 1.03353 1.19545 1.00804 0.93231 0.93759 1.19672 0.95128 0.97219 0.95610 1.20987 0.99209 0.98420 0.94697 1.21069 0.97390 1.00548 0.95250 1.21121 0.95195 0.98214 0.99750 1.21137 0.99798 0.98116 0.94652 1.21063 0.96648 0.98109 0.95302 1.18547 0.80010 0.84245 0.83268 1.90787 1.47348 1.71402 1.32311 1.48264 1.57474 1.19275 1.08481 1.22109 0.97394 0.99159 0.82583 1.22410 0.95982 0.90524 0.98907 1.62085 1.39796 1.21430 1.02793 1.19718 0.89800 0.96544 0.87003 1.21093 0.95626 1.48319 0.89878 0.91857 1.25000 0.94883 0.95334 0.99350 1.69952 1.08064 1.48909 1.26754 0.86550 0.79478 0.78665 0.82649 1.20249 1.21358 1.20126 1.22392 0.94667 1.01153 0.90558 1.21775 0.95918 0.83292 0.99538 0.86850 0.87683 0.89907 0.89306 0.86253 0.86294 0.86377 0.86206 0.86161 0.90660 0.90061 0.95700 0.88457 0.99117 0.95036 0.92789 0.95545 0.90052 0.89393 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 13.61 28.91 0.39 -0.97 16 2 C -0.14 -1.66 3.18 -102.85 -0.33 -1.99 16 3 C -0.04 -0.38 5.50 -29.03 -0.16 -0.54 16 4 C -0.08 -0.87 5.12 -104.62 -0.54 -1.41 16 5 C -0.12 -1.15 9.68 -39.58 -0.38 -1.53 16 6 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 7 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 8 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 9 C -0.09 -1.17 9.55 -39.59 -0.38 -1.55 16 10 C 0.55 8.30 7.09 -12.66 -0.09 8.21 16 11 O -0.54 -9.77 16.39 5.26 0.09 -9.68 16 12 N -0.60 -9.03 3.00 -173.58 -0.52 -9.55 16 13 C 0.11 1.55 6.39 -3.37 -0.02 1.53 16 14 C 0.05 0.91 5.47 -3.47 -0.02 0.89 16 15 N -0.54 -10.98 4.62 -235.47 -1.09 -12.06 16 16 C 0.19 4.88 4.72 -4.98 -0.02 4.86 16 17 C -0.51 -13.75 8.41 -34.44 -0.29 -14.03 16 18 H 0.06 1.66 7.13 -52.48 -0.37 1.29 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 21 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.04 0.74 5.62 -3.71 -0.02 0.72 16 26 C 0.12 1.82 6.61 -3.61 -0.02 1.80 16 27 H 0.11 0.79 8.03 -52.49 -0.42 0.37 16 28 H 0.10 1.00 8.05 -52.49 -0.42 0.57 16 29 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 30 H 0.09 0.71 7.93 -51.93 -0.41 0.30 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.95 6.25 -51.93 -0.32 0.62 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 1.84 6.67 -51.93 -0.35 1.50 16 40 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 41 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 45 H 0.09 1.36 7.04 -51.93 -0.37 1.00 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -31.65 379.16 -10.54 -42.19 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.28 Total: 0.32 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -3.17 Total: -7.48 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.87 Total: -47.00 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.65 -10.54 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144396159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.166 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds