Wall clock time and date at job start Tue Mar 31 2020 11:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.50696 * 120.00202 * 2 1 4 4 C 1.50705 * 109.47169 * 94.39050 * 3 2 1 5 5 C 1.38239 * 119.99895 * 265.38660 * 4 3 2 6 6 C 1.38236 * 120.00035 * 179.76467 * 5 4 3 7 7 C 1.38235 * 119.99535 * 0.50658 * 6 5 4 8 8 C 1.38233 * 120.00284 * 359.75042 * 7 6 5 9 9 C 1.38230 * 120.00148 * 85.65945 * 4 3 2 10 10 C 1.47109 * 119.99973 * 180.02562 * 2 1 3 11 11 O 1.21615 * 119.99792 * 256.12130 * 10 2 1 12 12 N 1.34776 * 119.99913 * 76.40329 * 10 2 1 13 13 C 1.47079 * 120.88196 * 4.19009 * 12 10 2 14 14 C 1.53692 * 108.27748 * 128.76059 * 13 12 10 15 15 N 1.46898 * 109.25619 * 54.08174 * 14 13 12 16 16 C 1.46902 * 110.99590 * 172.61065 * 15 14 13 17 17 C 1.50695 * 109.47080 * 294.29937 * 16 15 14 18 18 H 1.08006 * 120.00293 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00300 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99523 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00409 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46770 * 59.99798 * 21 19 17 23 23 H 1.48497 * 109.46872 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47118 * 299.99904 * 21 19 17 25 25 C 1.46895 * 111.26780 * 296.75774 * 15 14 13 26 26 C 1.47078 * 120.88187 * 184.47517 * 12 10 2 27 27 H 1.07992 * 120.00204 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99658 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47288 * 214.39086 * 3 2 1 30 30 H 1.09000 * 109.47145 * 334.39189 * 3 2 1 31 31 H 1.08001 * 119.99666 * 359.97438 * 5 4 3 32 32 H 1.07993 * 120.00071 * 180.23382 * 6 5 4 33 33 H 1.07998 * 119.99532 * 179.72405 * 7 6 5 34 34 H 1.07999 * 120.00113 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.00021 * 359.97438 * 9 4 3 36 36 H 1.09003 * 109.62823 * 248.53046 * 13 12 10 37 37 H 1.09000 * 109.62785 * 9.10478 * 13 12 10 38 38 H 1.09003 * 109.64471 * 294.08050 * 14 13 12 39 39 H 1.09003 * 109.42214 * 173.94857 * 14 13 12 40 40 H 1.08994 * 109.47730 * 54.30362 * 16 15 14 41 41 H 1.09005 * 109.47038 * 174.30374 * 16 15 14 42 42 H 0.97000 * 119.99552 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.49863 * 303.14171 * 25 15 14 44 44 H 1.09004 * 109.48934 * 183.06429 * 25 15 14 45 45 H 1.09004 * 109.62853 * 350.89169 * 26 12 10 46 46 H 1.08998 * 109.62940 * 111.47173 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0834 1.3050 0.0000 4 6 2.4288 1.6857 1.4167 5 6 1.6001 2.5351 2.1258 6 6 1.9144 2.8804 3.4269 7 6 3.0628 2.3847 4.0153 8 6 3.8942 1.5395 3.3045 9 6 3.5772 1.1900 2.0052 10 6 2.0655 -1.2740 -0.0006 11 8 2.5883 -1.6747 1.0217 12 7 2.1647 -1.9943 -1.1354 13 6 1.6247 -1.4824 -2.4041 14 6 2.7266 -1.5796 -3.4711 15 7 3.2309 -2.9584 -3.5226 16 6 4.1601 -3.1374 -4.6463 17 6 3.4149 -2.9716 -5.9455 18 1 2.3569 -2.7545 -5.9375 19 6 4.0836 -3.0970 -7.1448 20 7 5.3721 -3.3609 -7.1546 21 14 3.1601 -2.8908 -8.7554 22 1 2.5677 -1.5304 -8.8155 23 1 4.0994 -3.0719 -9.8912 24 1 2.0792 -3.9056 -8.8396 25 6 3.8605 -3.3432 -2.2524 26 6 2.8105 -3.3157 -1.1367 27 1 -0.5400 0.9352 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 2.9995 1.1957 -0.5804 30 1 1.4626 2.0831 -0.4442 31 1 0.7054 2.9262 1.6643 32 1 1.2650 3.5409 3.9821 33 1 3.3106 2.6580 5.0303 34 1 4.7917 1.1526 3.7641 35 1 4.2268 0.5296 1.4498 36 1 0.7656 -2.0821 -2.7049 37 1 1.3234 -0.4422 -2.2806 38 1 3.5428 -0.9030 -3.2177 39 1 2.3153 -1.3062 -4.4428 40 1 4.9529 -2.3920 -4.5845 41 1 4.5956 -4.1356 -4.6021 42 1 5.8426 -3.4487 -7.9983 43 1 4.6609 -2.6422 -2.0160 44 1 4.2715 -4.3490 -2.3403 45 1 3.2936 -3.4882 -0.1749 46 1 2.0632 -4.0882 -1.3180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144396159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:28 Heat of formation + Delta-G solvation = -1.415963 kcal Electronic energy + Delta-G solvation = -25843.338221 eV Core-core repulsion = 22311.387241 eV Total energy + Delta-G solvation = -3531.950980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38737 -40.08585 -38.95970 -36.16384 -35.83750 -34.36652 -32.48363 -31.83147 -31.72309 -29.97606 -27.52347 -27.38001 -24.88280 -24.51871 -23.48786 -23.12749 -22.31663 -21.25188 -19.37011 -18.49185 -18.02504 -17.47931 -17.03173 -16.68528 -16.52017 -16.03828 -15.97607 -15.92066 -15.58370 -15.32627 -15.19839 -14.68952 -14.25283 -14.22010 -14.12691 -13.87740 -13.55467 -13.54306 -13.16063 -13.05868 -12.77234 -12.65805 -12.57844 -12.41881 -12.34742 -12.14444 -12.06320 -11.82720 -11.77004 -11.31492 -10.92917 -10.61151 -10.25005 -9.81247 -9.77546 -9.55971 -9.09346 -8.20181 -6.30968 0.42134 0.54250 0.91702 1.43913 1.47086 1.53018 1.54828 2.02660 2.41399 2.91958 3.11963 3.20637 3.45832 3.93258 3.95555 3.99261 4.02293 4.04971 4.18661 4.20211 4.26720 4.31161 4.39045 4.42946 4.51566 4.65819 4.69552 4.76304 4.80640 4.83479 4.85062 4.91689 4.99382 5.13855 5.17284 5.18191 5.20153 5.33913 5.44720 5.49210 5.59691 5.63301 5.65140 5.76383 6.01200 6.16360 6.20516 6.39027 6.53499 6.84659 7.05996 7.39178 8.91109 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.002734 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.671150 B =10240.583622 C =10428.381540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.170 4.170 3 C -0.031 4.031 4 C -0.089 4.089 5 C -0.117 4.117 6 C -0.126 4.126 7 C -0.131 4.131 8 C -0.137 4.137 9 C -0.123 4.123 10 C 0.550 3.450 11 O -0.578 6.578 12 N -0.606 5.606 13 C 0.124 3.876 14 C 0.050 3.950 15 N -0.537 5.537 16 C 0.209 3.791 17 C -0.522 4.522 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.938 5.938 21 Si 0.972 3.028 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.267 1.267 25 C 0.045 3.955 26 C 0.126 3.874 27 H 0.150 0.850 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.012 0.988 39 H 0.089 0.911 40 H -0.043 1.043 41 H 0.004 0.996 42 H 0.264 0.736 43 H 0.011 0.989 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 13.072 17.771 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.172 4.172 3 C -0.068 4.068 4 C -0.089 4.089 5 C -0.134 4.134 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.155 4.155 9 C -0.141 4.141 10 C 0.340 3.660 11 O -0.458 6.458 12 N -0.339 5.339 13 C 0.002 3.998 14 C -0.078 4.078 15 N -0.262 5.262 16 C 0.083 3.917 17 C -0.560 4.560 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.578 5.578 21 Si 0.796 3.204 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.192 1.192 25 C -0.085 4.085 26 C 0.003 3.997 27 H 0.168 0.832 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.142 0.858 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.030 0.970 39 H 0.107 0.893 40 H -0.025 1.025 41 H 0.022 0.978 42 H 0.073 0.927 43 H 0.030 0.970 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.030 12.510 18.107 25.081 hybrid contribution 1.492 -0.134 -0.888 1.742 sum -10.538 12.376 17.219 23.679 Atomic orbital electron populations 1.24643 0.92865 1.04688 0.92807 1.21299 0.96252 0.92580 1.07118 1.19557 1.00555 0.93510 0.93170 1.19883 0.94957 0.97633 0.96385 1.21338 0.99715 0.97540 0.94843 1.21492 0.97278 1.00214 0.95381 1.21437 0.95173 0.97573 1.00705 1.21325 1.00651 0.98960 0.94538 1.21067 0.97701 0.99186 0.96149 1.19193 0.79403 0.85039 0.82381 1.90763 1.48982 1.72450 1.33641 1.48359 1.57423 1.18994 1.09083 1.22075 0.95716 1.01396 0.80647 1.22460 0.96742 0.88538 1.00103 1.62029 1.38350 1.23359 1.02489 1.19369 0.89652 0.93830 0.88881 1.21422 0.96042 1.47927 0.90579 0.91058 1.25969 0.95677 0.94819 1.03367 1.70101 1.09906 1.50047 1.27746 0.85395 0.78096 0.79319 0.77575 1.18764 1.21364 1.19178 1.22411 0.95165 1.00652 0.90232 1.21615 0.95499 0.84454 0.98129 0.83243 0.87553 0.91755 0.86031 0.83273 0.83409 0.84194 0.85830 0.88755 0.89408 0.86860 0.96983 0.89319 1.02489 0.97831 0.92745 0.97040 0.90070 0.89518 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 13.61 66.65 0.91 -0.75 16 2 C -0.17 -3.59 3.18 -18.70 -0.06 -3.65 16 3 C -0.03 -0.58 5.50 29.10 0.16 -0.42 16 4 C -0.09 -1.93 5.12 -19.86 -0.10 -2.03 16 5 C -0.12 -1.96 9.68 22.27 0.22 -1.75 16 6 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 7 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 8 C -0.14 -3.12 10.05 22.27 0.22 -2.90 16 9 C -0.12 -3.21 9.55 22.27 0.21 -3.00 16 10 C 0.55 16.26 7.09 86.57 0.61 16.88 16 11 O -0.58 -21.35 16.39 -4.08 -0.07 -21.41 16 12 N -0.61 -17.77 3.00 -821.33 -2.47 -20.23 16 13 C 0.12 3.27 6.39 86.50 0.55 3.82 16 14 C 0.05 1.81 5.47 86.54 0.47 2.28 16 15 N -0.54 -22.59 4.62 -898.90 -4.15 -26.75 16 16 C 0.21 11.00 4.72 85.56 0.40 11.41 16 17 C -0.52 -28.50 8.41 25.60 0.22 -28.28 16 18 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 19 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 20 N -0.94 -56.04 13.29 21.45 0.28 -55.76 16 21 Si 0.97 42.86 29.54 68.60 2.03 44.88 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 23 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 C 0.04 1.65 5.62 86.38 0.49 2.14 16 26 C 0.13 3.94 6.61 86.35 0.57 4.51 16 27 H 0.15 1.15 8.03 -2.91 -0.02 1.12 16 28 H 0.11 1.57 8.05 -2.91 -0.02 1.55 16 29 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 30 H 0.12 1.46 7.93 -2.39 -0.02 1.44 16 31 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 33 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.09 2.83 8.06 -2.91 -0.02 2.80 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.11 2.30 6.25 -2.39 -0.01 2.28 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.09 3.33 6.67 -2.39 -0.02 3.32 16 40 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 41 H 0.00 0.21 7.97 -2.38 -0.02 0.19 16 42 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.08 2.96 7.99 -2.38 -0.02 2.94 16 45 H 0.09 2.76 7.04 -2.39 -0.02 2.74 16 46 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -71.84 379.16 2.35 -69.49 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.94 Total: 15.06 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 5.78 Total: -5.28 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -6.33 Total: -102.74 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.41 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -71.84 2.35 -69.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144396159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.073 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds