Wall clock time and date at job start Tue Mar 31 2020 11:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.37710 * 120.09494 * 300.00313 * 4 2 1 6 6 C 1.38907 * 120.64972 * 179.97438 * 5 4 2 7 7 C 1.36473 * 120.61320 * 0.04415 * 6 5 4 8 8 C 1.40070 * 119.82695 * 359.97438 * 7 6 5 9 9 C 1.41596 * 133.37461 * 180.02562 * 8 7 6 10 10 C 1.35859 * 107.72689 * 180.02562 * 9 8 7 11 11 C 1.47063 * 125.42510 * 180.02562 * 10 9 8 12 12 O 1.21640 * 120.00189 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99660 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99595 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46712 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47040 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47130 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99774 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00369 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46768 * 89.99892 * 21 19 17 23 23 H 1.48493 * 109.47163 * 209.99969 * 21 19 17 24 24 H 1.48496 * 109.46862 * 330.00465 * 21 19 17 25 25 N 1.38151 * 109.14817 * 359.97438 * 10 9 8 26 26 H 0.97002 * 125.60502 * 179.97438 * 25 10 9 27 27 C 1.37490 * 108.78946 * 359.74607 * 25 10 9 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 35 35 H 1.07993 * 119.67629 * 359.97438 * 5 4 2 36 36 H 1.07994 * 119.69057 * 180.02562 * 6 5 4 37 37 H 1.07994 * 120.08624 * 180.02562 * 7 6 5 38 38 H 1.08003 * 126.13471 * 359.97438 * 9 8 7 39 39 H 0.97001 * 120.00272 * 0.02562 * 13 11 10 40 40 H 1.08998 * 109.47496 * 300.00125 * 14 13 11 41 41 H 1.08999 * 109.46929 * 60.00178 * 14 13 11 42 42 H 1.09003 * 109.46909 * 299.99873 * 15 14 13 43 43 H 1.08999 * 109.47308 * 60.00374 * 15 14 13 44 44 H 1.08997 * 109.46467 * 300.00121 * 16 15 14 45 45 H 1.08999 * 109.47130 * 59.99817 * 16 15 14 46 46 H 0.96997 * 120.00529 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7009 -0.2417 2.4821 6 6 2.1572 -0.8878 3.6240 7 6 2.9435 -1.9990 3.5264 8 6 3.2949 -2.4952 2.2646 9 6 4.0740 -3.5969 1.8353 10 6 4.0760 -3.5978 0.4767 11 6 4.7685 -4.5773 -0.3740 12 8 5.4062 -5.4804 0.1334 13 7 4.6965 -4.4744 -1.7160 14 6 5.3868 -5.4498 -2.5635 15 6 5.1462 -5.1073 -4.0351 16 6 5.8666 -6.1264 -4.9203 17 6 5.6302 -5.7886 -6.3698 18 1 5.0261 -4.9330 -6.6333 19 6 6.1850 -6.5720 -7.3595 20 7 6.9201 -7.6142 -7.0386 21 14 5.8914 -6.1538 -9.1563 22 1 6.9569 -5.2348 -9.6311 23 1 5.9154 -7.3992 -9.9647 24 1 4.5686 -5.4948 -9.3013 25 7 3.3229 -2.5327 0.0218 26 1 3.1658 -2.3088 -0.9089 27 6 2.8284 -1.8453 1.1049 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.0801 0.6369 2.5770 36 1 1.8875 -0.5071 4.5979 37 1 3.2932 -2.4949 4.4198 38 1 4.5771 -4.3083 2.4735 39 1 4.1882 -3.7541 -2.1206 40 1 6.4561 -5.4207 -2.3542 41 1 5.0028 -6.4484 -2.3550 42 1 4.0769 -5.1361 -4.2447 43 1 5.5305 -4.1088 -4.2433 44 1 6.9358 -6.0979 -4.7107 45 1 5.4819 -7.1247 -4.7120 46 1 7.3108 -8.1651 -7.7348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154101941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:06 Heat of formation + Delta-G solvation = -12.070985 kcal Electronic energy + Delta-G solvation = -24753.978871 eV Core-core repulsion = 21221.565854 eV Total energy + Delta-G solvation = -3532.413017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.88094 -39.45358 -37.65709 -35.64236 -35.52061 -33.42061 -31.57255 -31.36859 -29.69579 -28.86457 -27.50395 -26.93995 -24.53923 -23.19063 -22.38206 -22.01411 -20.82041 -20.01430 -19.82215 -18.43917 -17.27954 -16.53645 -15.95365 -15.64325 -15.61624 -15.16649 -14.80004 -14.50832 -14.43069 -14.41907 -14.07299 -13.89677 -13.48778 -13.39666 -13.09410 -12.62296 -12.35871 -12.32938 -12.14865 -11.91740 -11.90747 -11.73841 -11.47476 -11.11558 -10.95165 -10.86742 -10.82948 -10.65892 -10.23579 -9.95608 -9.94963 -9.49776 -9.18294 -9.00863 -8.45829 -8.41882 -7.92884 -6.06329 -4.09875 0.55647 1.37773 1.94344 2.66609 3.14699 3.27389 3.28457 3.34068 3.36541 3.63079 4.22480 4.39697 4.40215 4.59840 4.68336 4.81312 4.83962 4.87981 5.09237 5.13990 5.26480 5.28044 5.29466 5.39950 5.46107 5.50906 5.58538 5.62489 5.67149 5.74309 5.82167 5.86879 5.86998 6.05175 6.22856 6.27426 6.30883 6.37629 6.45695 6.49426 6.69762 6.83198 6.90487 7.11035 7.49636 7.57545 7.69421 7.91611 8.12430 8.32456 8.96540 9.54592 11.04894 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.002365 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.434025 B =11835.360405 C =13284.128841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.088 4.088 5 C -0.089 4.089 6 C -0.147 4.147 7 C -0.065 4.065 8 C -0.115 4.115 9 C -0.112 4.112 10 C 0.024 3.976 11 C 0.576 3.424 12 O -0.523 6.523 13 N -0.722 5.722 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 N -0.577 5.577 26 H 0.417 0.583 27 C 0.117 3.883 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.156 0.844 39 H 0.393 0.607 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 17.730 20.064 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.090 4.090 5 C -0.109 4.109 6 C -0.166 4.166 7 C -0.084 4.084 8 C -0.120 4.120 9 C -0.139 4.139 10 C -0.086 4.086 11 C 0.361 3.639 12 O -0.399 6.399 13 N -0.372 5.372 14 C -0.006 4.006 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 N -0.182 5.182 26 H 0.255 0.745 27 C 0.007 3.993 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.174 0.826 39 H 0.226 0.774 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.948 16.865 20.147 28.864 hybrid contribution -0.402 0.584 -1.756 1.893 sum -12.351 17.450 18.392 28.201 Atomic orbital electron populations 1.21867 0.93976 1.02151 1.02072 1.20013 0.96253 0.96177 0.94855 1.21865 1.01313 0.94813 1.02071 1.18852 1.00136 0.94464 0.95558 1.20679 0.99669 0.99634 0.90900 1.20591 1.00597 0.97038 0.98370 1.20388 0.96891 0.95750 0.95389 1.18197 1.02872 0.97965 0.92978 1.20909 1.01670 0.98943 0.92332 1.20314 1.01563 0.92369 0.94309 1.17241 0.80696 0.83980 0.81962 1.90854 1.41729 1.33495 1.73806 1.46145 1.53328 1.32104 1.05624 1.21748 0.96939 0.91413 0.90533 1.21909 1.01210 1.01531 0.91280 1.19028 0.95599 0.93436 0.93295 1.21178 1.31734 1.12196 0.91103 0.92682 1.25031 0.95149 0.95022 0.99241 1.69959 1.33516 1.16546 1.33145 0.86577 0.78570 0.77830 0.84914 1.20629 1.21151 1.19916 1.41955 1.43933 1.24405 1.07886 0.74507 1.18127 0.99271 0.95309 0.86615 0.92204 0.92511 0.92294 0.91484 0.92295 0.92206 0.92508 0.85782 0.85969 0.85803 0.82644 0.77392 0.91274 0.91265 0.92706 0.92703 0.96188 0.96175 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.01 37.16 0.33 -0.57 16 2 C -0.05 -0.39 3.10 -91.78 -0.28 -0.67 16 3 C -0.14 -0.90 9.01 37.16 0.33 -0.57 16 4 C -0.09 -0.77 4.80 -104.46 -0.50 -1.27 16 5 C -0.09 -0.70 8.70 -39.53 -0.34 -1.05 16 6 C -0.15 -1.17 9.97 -39.97 -0.40 -1.57 16 7 C -0.07 -0.61 10.06 -39.53 -0.40 -1.00 16 8 C -0.12 -1.31 6.16 -106.93 -0.66 -1.96 16 9 C -0.11 -1.38 10.53 -39.15 -0.41 -1.79 16 10 C 0.02 0.30 6.97 -82.29 -0.57 -0.27 16 11 C 0.58 8.71 7.80 -12.68 -0.10 8.61 16 12 O -0.52 -9.78 16.84 5.24 0.09 -9.70 16 13 N -0.72 -10.07 5.55 -61.50 -0.34 -10.42 16 14 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 15 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 25 N -0.58 -5.91 5.97 -7.35 -0.04 -5.95 16 26 H 0.42 3.27 7.45 -40.82 -0.30 2.97 16 27 C 0.12 1.24 6.92 -83.97 -0.58 0.66 16 28 H 0.06 0.33 7.38 -51.93 -0.38 -0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.47 7.23 -51.93 -0.38 0.09 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.33 7.38 -51.93 -0.38 -0.05 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.12 0.72 7.07 -52.49 -0.37 0.35 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.39 4.31 7.53 -40.82 -0.31 4.00 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -32.53 381.69 -10.29 -42.82 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.16 Total: 1.75 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -4.29 Total: -14.69 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.35 Total: -42.18 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.53 -10.29 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154101941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.747 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds