Wall clock time and date at job start Tue Mar 31 2020 11:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.37710 * 120.09494 * 300.00313 * 4 2 1 6 6 C 1.38907 * 120.64972 * 179.97438 * 5 4 2 7 7 C 1.36473 * 120.61320 * 0.04415 * 6 5 4 8 8 C 1.40070 * 119.82695 * 359.97438 * 7 6 5 9 9 C 1.41596 * 133.37461 * 180.02562 * 8 7 6 10 10 C 1.35859 * 107.72689 * 180.02562 * 9 8 7 11 11 C 1.47063 * 125.42510 * 180.02562 * 10 9 8 12 12 O 1.21640 * 120.00189 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99660 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99595 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46712 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47040 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47130 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99774 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00369 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46768 * 89.99892 * 21 19 17 23 23 H 1.48493 * 109.47163 * 209.99969 * 21 19 17 24 24 H 1.48496 * 109.46862 * 330.00465 * 21 19 17 25 25 N 1.38151 * 109.14817 * 359.97438 * 10 9 8 26 26 H 0.97002 * 125.60502 * 179.97438 * 25 10 9 27 27 C 1.37490 * 108.78946 * 359.74607 * 25 10 9 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 35 35 H 1.07993 * 119.67629 * 359.97438 * 5 4 2 36 36 H 1.07994 * 119.69057 * 180.02562 * 6 5 4 37 37 H 1.07994 * 120.08624 * 180.02562 * 7 6 5 38 38 H 1.08003 * 126.13471 * 359.97438 * 9 8 7 39 39 H 0.97001 * 120.00272 * 0.02562 * 13 11 10 40 40 H 1.08998 * 109.47496 * 300.00125 * 14 13 11 41 41 H 1.08999 * 109.46929 * 60.00178 * 14 13 11 42 42 H 1.09003 * 109.46909 * 299.99873 * 15 14 13 43 43 H 1.08999 * 109.47308 * 60.00374 * 15 14 13 44 44 H 1.08997 * 109.46467 * 300.00121 * 16 15 14 45 45 H 1.08999 * 109.47130 * 59.99817 * 16 15 14 46 46 H 0.96997 * 120.00529 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7009 -0.2417 2.4821 6 6 2.1572 -0.8878 3.6240 7 6 2.9435 -1.9990 3.5264 8 6 3.2949 -2.4952 2.2646 9 6 4.0740 -3.5969 1.8353 10 6 4.0760 -3.5978 0.4767 11 6 4.7685 -4.5773 -0.3740 12 8 5.4062 -5.4804 0.1334 13 7 4.6965 -4.4744 -1.7160 14 6 5.3868 -5.4498 -2.5635 15 6 5.1462 -5.1073 -4.0351 16 6 5.8666 -6.1264 -4.9203 17 6 5.6302 -5.7886 -6.3698 18 1 5.0261 -4.9330 -6.6333 19 6 6.1850 -6.5720 -7.3595 20 7 6.9201 -7.6142 -7.0386 21 14 5.8914 -6.1538 -9.1563 22 1 6.9569 -5.2348 -9.6311 23 1 5.9154 -7.3992 -9.9647 24 1 4.5686 -5.4948 -9.3013 25 7 3.3229 -2.5327 0.0218 26 1 3.1658 -2.3088 -0.9089 27 6 2.8284 -1.8453 1.1049 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.0801 0.6369 2.5770 36 1 1.8875 -0.5071 4.5979 37 1 3.2932 -2.4949 4.4198 38 1 4.5771 -4.3083 2.4735 39 1 4.1882 -3.7541 -2.1206 40 1 6.4561 -5.4207 -2.3542 41 1 5.0028 -6.4484 -2.3550 42 1 4.0769 -5.1361 -4.2447 43 1 5.5305 -4.1088 -4.2433 44 1 6.9358 -6.0979 -4.7107 45 1 5.4819 -7.1247 -4.7120 46 1 7.3108 -8.1651 -7.7348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154101941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:05 Heat of formation + Delta-G solvation = -30.758929 kcal Electronic energy + Delta-G solvation = -24754.789241 eV Core-core repulsion = 21221.565854 eV Total energy + Delta-G solvation = -3533.223387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.70788 -40.62294 -38.39848 -37.09380 -36.19921 -35.27406 -33.17488 -32.28852 -30.62961 -29.60807 -28.61501 -27.96368 -25.83595 -24.41388 -23.31551 -22.85702 -22.40247 -21.09476 -20.64943 -19.32543 -18.53574 -18.18056 -17.04458 -16.91518 -16.57232 -16.43642 -15.90885 -15.90779 -15.41438 -15.11454 -15.02201 -14.82110 -14.53027 -14.26245 -14.03138 -13.88243 -13.79790 -13.56471 -13.06642 -12.90165 -12.77871 -12.75510 -12.60048 -12.45974 -12.42007 -12.02518 -11.75704 -11.72923 -11.61949 -11.47384 -11.34585 -11.15156 -10.74373 -10.57205 -10.31765 -9.24006 -8.68881 -8.21244 -6.32845 -0.27950 0.67240 1.03363 1.40559 1.41750 1.52595 1.78954 2.00427 2.19568 2.40655 2.92253 3.12667 3.58706 3.60265 3.85873 4.00094 4.07775 4.14379 4.15426 4.30309 4.31342 4.46906 4.47862 4.49221 4.54248 4.76049 4.83983 4.87372 4.88784 4.88853 5.01314 5.05971 5.07720 5.11902 5.22470 5.24609 5.34378 5.40304 5.46287 5.49606 5.64370 5.66046 5.67369 5.70190 5.81808 6.11855 6.19556 6.29916 6.44755 6.84524 6.94853 7.36866 8.90816 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.002365 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.434025 B =11835.360405 C =13284.128841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.095 4.095 5 C -0.084 4.084 6 C -0.143 4.143 7 C -0.077 4.077 8 C -0.139 4.139 9 C -0.116 4.116 10 C 0.007 3.993 11 C 0.579 3.421 12 O -0.566 6.566 13 N -0.709 5.709 14 C 0.129 3.871 15 C -0.102 4.102 16 C 0.023 3.977 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.260 1.260 25 N -0.568 5.568 26 H 0.426 0.574 27 C 0.108 3.892 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.410 0.590 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.069 0.931 44 H -0.007 1.007 45 H -0.007 1.007 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.676 20.735 20.228 32.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.098 4.098 5 C -0.104 4.104 6 C -0.162 4.162 7 C -0.095 4.095 8 C -0.144 4.144 9 C -0.144 4.144 10 C -0.102 4.102 11 C 0.366 3.634 12 O -0.445 6.445 13 N -0.360 5.360 14 C 0.005 3.995 15 C -0.140 4.140 16 C -0.014 4.014 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.184 1.184 25 N -0.173 5.173 26 H 0.266 0.734 27 C -0.002 4.002 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.171 0.829 39 H 0.246 0.754 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.012 0.988 45 H 0.012 0.988 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.103 19.919 20.294 31.742 hybrid contribution 0.210 -0.283 -1.682 1.718 sum -13.893 19.636 18.613 30.414 Atomic orbital electron populations 1.21852 0.93208 1.01762 1.02999 1.20050 0.96811 0.96462 0.93986 1.21850 1.00641 0.94327 1.02998 1.19123 0.99847 0.93992 0.96821 1.21076 0.98922 0.99968 0.90407 1.20967 0.99324 0.96136 0.99781 1.20666 0.97271 0.96433 0.95165 1.18413 1.03577 0.98071 0.94308 1.21065 1.01589 0.99316 0.92406 1.19847 1.03194 0.93217 0.93989 1.17502 0.80026 0.83765 0.82059 1.90826 1.43732 1.35416 1.74549 1.45851 1.53035 1.31913 1.05182 1.21357 0.96481 0.91606 0.90017 1.21612 1.01201 1.00194 0.90985 1.18940 0.94561 0.93915 0.94015 1.21663 1.31517 1.12393 0.92319 0.91528 1.26023 0.94845 0.94839 1.04416 1.70106 1.34774 1.17841 1.34753 0.85421 0.79108 0.77638 0.78716 1.19824 1.21070 1.18420 1.41815 1.43406 1.23632 1.08489 0.73357 1.18423 0.99552 0.95859 0.86360 0.91224 0.93530 0.91475 0.91717 0.91477 0.91227 0.93526 0.83221 0.83217 0.84396 0.82892 0.75366 0.92538 0.92531 0.91274 0.91251 0.98839 0.98822 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.01 71.98 0.65 -0.76 16 2 C -0.05 -0.65 3.10 -11.54 -0.04 -0.69 16 3 C -0.14 -1.41 9.01 71.98 0.65 -0.76 16 4 C -0.10 -1.48 4.80 -19.76 -0.09 -1.57 16 5 C -0.08 -1.07 8.70 22.31 0.19 -0.88 16 6 C -0.14 -1.86 9.97 22.02 0.22 -1.64 16 7 C -0.08 -1.30 10.06 22.30 0.22 -1.07 16 8 C -0.14 -3.06 6.16 -21.36 -0.13 -3.19 16 9 C -0.12 -2.93 10.53 22.55 0.24 -2.69 16 10 C 0.01 0.19 6.97 39.91 0.28 0.46 16 11 C 0.58 17.91 7.80 86.56 0.68 18.58 16 12 O -0.57 -22.09 16.84 -4.16 -0.07 -22.16 16 13 N -0.71 -19.70 5.55 -466.71 -2.59 -22.29 16 14 C 0.13 4.47 5.67 86.38 0.49 4.96 16 15 C -0.10 -3.82 5.27 30.60 0.16 -3.66 16 16 C 0.02 1.20 4.97 29.85 0.15 1.35 16 17 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 18 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 21 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 25 N -0.57 -11.25 5.97 -177.18 -1.06 -12.31 16 26 H 0.43 6.24 7.45 -92.71 -0.69 5.55 16 27 C 0.11 2.19 6.92 39.13 0.27 2.46 16 28 H 0.07 0.55 7.38 -2.39 -0.02 0.54 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.79 7.23 -2.39 -0.02 0.77 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.55 7.38 -2.39 -0.02 0.53 16 34 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.15 1.11 7.07 -2.91 -0.02 1.09 16 36 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 39 H 0.41 8.52 7.53 -92.71 -0.70 7.82 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 46 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -71.54 381.69 2.82 -68.72 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -0.40 Total: 17.54 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 4.63 Total: -18.43 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -3.37 Total: -91.12 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -71.54 2.82 -68.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154101941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.959 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds