Wall clock time and date at job start Tue Mar 31 2020 10:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38374 * 119.92681 * 2 1 4 4 C 1.38342 * 120.29230 * 180.02562 * 3 2 1 5 5 C 1.37980 * 120.14363 * 0.28786 * 4 3 2 6 6 C 1.39561 * 119.85218 * 359.45951 * 5 4 3 7 7 C 1.47845 * 120.14500 * 180.29226 * 6 5 4 8 8 O 1.21557 * 119.99843 * 180.22892 * 7 6 5 9 9 N 1.34773 * 120.00188 * 0.22973 * 7 6 5 10 10 C 1.46492 * 120.00249 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47299 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46966 * 179.97438 * 11 10 9 13 13 C 1.29455 * 117.69559 * 94.99908 * 12 11 10 14 14 C 1.50328 * 123.65130 * 180.85661 * 13 12 11 15 15 N 1.47001 * 109.16631 * 349.01875 * 14 13 12 16 16 C 1.36936 * 121.37904 * 222.96970 * 15 14 13 17 17 H 1.07997 * 120.00147 * 155.96988 * 16 15 14 18 18 C 1.38816 * 119.99756 * 335.96789 * 16 15 14 19 19 N 1.31620 * 119.99687 * 344.52559 * 18 16 15 20 20 Si 1.86793 * 120.00083 * 164.52328 * 18 16 15 21 21 H 1.48498 * 109.47267 * 59.99931 * 20 18 16 22 22 H 1.48495 * 109.47358 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46974 * 300.00473 * 20 18 16 24 24 C 1.47345 * 117.24682 * 42.95078 * 15 14 13 25 25 C 1.49972 * 117.69460 * 274.73714 * 12 11 10 26 26 C 1.37938 * 119.92255 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.47256 * 89.99867 * 1 2 3 28 28 H 1.09002 * 109.47033 * 210.00513 * 1 2 3 29 29 H 1.08998 * 109.46839 * 330.00216 * 1 2 3 30 30 H 1.07995 * 119.85793 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.93026 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.07275 * 179.70638 * 5 4 3 33 33 H 0.97003 * 119.99683 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.47071 * 300.00122 * 10 9 7 35 35 H 1.09001 * 109.47680 * 59.99545 * 10 9 7 36 36 H 1.09000 * 109.46926 * 299.99566 * 11 10 9 37 37 H 1.08996 * 109.47114 * 59.99583 * 11 10 9 38 38 H 1.07996 * 118.17494 * 0.87710 * 13 12 11 39 39 H 1.08994 * 109.51959 * 108.93253 * 14 13 12 40 40 H 1.09002 * 109.51675 * 229.11534 * 14 13 12 41 41 H 0.97008 * 119.99352 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.78150 * 57.80918 * 24 15 14 43 43 H 1.09004 * 109.77781 * 178.61446 * 24 15 14 44 44 H 1.09003 * 109.31298 * 281.29010 * 25 12 11 45 45 H 1.08998 * 109.31390 * 40.71539 * 25 12 11 46 46 H 1.07999 * 120.07781 * 359.95718 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 -0.0005 5 6 4.2813 0.0193 -0.0071 6 6 3.5912 -1.1937 -0.0017 7 6 4.3353 -2.4713 -0.0021 8 8 3.7315 -3.5263 -0.0017 9 7 5.6830 -2.4662 -0.0030 10 6 6.4203 -3.7320 -0.0040 11 6 7.9235 -3.4468 -0.0042 12 6 8.6819 -4.7490 -0.0046 13 6 9.0707 -5.2185 -1.1466 14 6 9.8188 -6.5129 -1.3041 15 7 10.2478 -6.9865 0.0198 16 6 11.5024 -7.4964 0.2225 17 1 11.9401 -7.4771 1.2096 18 6 12.2115 -8.0383 -0.8408 19 7 11.5889 -8.3433 -1.9596 20 14 14.0491 -8.3344 -0.6837 21 1 14.3048 -9.2765 0.4353 22 1 14.5668 -8.9152 -1.9485 23 1 14.7367 -7.0462 -0.4131 24 6 9.2722 -6.8895 1.1197 25 6 8.9381 -5.4068 1.3186 26 6 2.1951 -1.1955 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6539 2.1325 0.0004 31 1 4.1137 2.1474 -0.0001 32 1 5.3613 0.0276 -0.0123 33 1 6.1648 -1.6243 -0.0037 34 1 6.1597 -4.3050 0.8860 35 1 6.1586 -4.3044 -0.8940 36 1 8.1844 -2.8737 -0.8940 37 1 8.1848 -2.8747 0.8860 38 1 8.8456 -4.6483 -2.0357 39 1 9.1674 -7.2563 -1.7636 40 1 10.6933 -6.3537 -1.9350 41 1 12.0846 -8.7216 -2.7027 42 1 8.3696 -7.4435 0.8621 43 1 9.7058 -7.2943 2.0341 44 1 9.7721 -4.9088 1.8132 45 1 8.0486 -5.3200 1.9426 46 1 1.6552 -2.1308 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159136932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:51 Heat of formation + Delta-G solvation = 15.676714 kcal Electronic energy + Delta-G solvation = -24656.762658 eV Core-core repulsion = 21125.552872 eV Total energy + Delta-G solvation = -3531.209786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44679 -38.78916 -37.83639 -35.47015 -33.80428 -33.08057 -31.63406 -31.18746 -29.81796 -28.71663 -27.26413 -25.55546 -24.06244 -22.87009 -22.34803 -22.18648 -20.95269 -20.28263 -17.92293 -17.58920 -16.61789 -16.23206 -15.79406 -15.57051 -15.12973 -14.97684 -14.81953 -14.28633 -14.04984 -13.91444 -13.86782 -13.59493 -13.38751 -13.27117 -12.64598 -12.62087 -12.35849 -12.17350 -12.02385 -11.92515 -11.56369 -11.46486 -11.39255 -10.99991 -10.88451 -10.71074 -10.33498 -10.27905 -10.04810 -9.79237 -9.52941 -9.38296 -9.17201 -9.05377 -8.63284 -7.90638 -6.70384 -5.76534 -3.15245 0.52431 0.96264 2.64866 2.81025 3.14229 3.40153 3.45544 3.46757 3.54628 4.35437 4.38107 4.46896 4.51565 4.72157 4.88277 4.93560 5.11392 5.12463 5.21349 5.24900 5.29646 5.35991 5.41733 5.56530 5.58243 5.66044 5.68304 5.80518 5.94353 5.97152 6.01890 6.06136 6.13949 6.16944 6.23005 6.33127 6.41496 6.51291 6.57696 6.81087 6.93120 7.25482 7.31966 7.36794 7.43477 7.76837 7.90296 8.06140 8.41521 9.22886 9.85795 10.44645 11.33800 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.039820 B = 0.001982 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.998919 B =14122.968975 C =14298.323039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.098 4.098 4 C -0.123 4.123 5 C -0.093 4.093 6 C -0.128 4.128 7 C 0.554 3.446 8 O -0.535 6.535 9 N -0.724 5.724 10 C 0.124 3.876 11 C -0.092 4.092 12 C -0.143 4.143 13 C -0.146 4.146 14 C 0.196 3.804 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.143 3.857 25 C -0.091 4.091 26 C -0.062 4.062 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.398 0.602 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.219 21.284 3.566 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.131 4.131 7 C 0.341 3.659 8 O -0.413 6.413 9 N -0.376 5.376 10 C 0.001 3.999 11 C -0.130 4.130 12 C -0.144 4.144 13 C -0.166 4.166 14 C 0.071 3.929 15 N -0.319 5.319 16 C -0.375 4.375 17 H 0.085 0.915 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.016 3.984 25 C -0.130 4.130 26 C -0.081 4.081 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.535 20.394 3.418 27.769 hybrid contribution 1.293 0.379 -0.091 1.351 sum -17.242 20.773 3.327 27.201 Atomic orbital electron populations 1.20814 0.90610 1.03103 1.02658 1.19936 0.96548 0.92785 1.00262 1.21256 0.94338 0.97693 0.98375 1.21098 0.94282 0.98036 1.00716 1.21320 0.99841 0.91836 0.98210 1.20006 0.94444 0.92993 1.05623 1.18289 0.82211 0.88810 0.76624 1.90793 1.68482 1.32519 1.49520 1.46027 1.06073 1.10367 1.75131 1.21482 0.90725 0.84716 1.02973 1.20913 0.92587 0.97302 1.02149 1.20220 1.02064 0.96133 0.95946 1.23128 0.97973 0.99414 0.96040 1.19706 0.97069 0.88058 0.88034 1.44125 1.11205 1.71784 1.04752 1.19142 0.90490 1.32377 0.95481 0.91457 1.24994 0.98698 0.98876 0.97442 1.70014 1.34321 1.46190 1.04959 0.86321 0.85435 0.77919 0.76817 1.20941 1.21646 1.21142 1.20993 0.92756 0.92226 0.92399 1.20794 0.99594 0.98806 0.93820 1.21194 0.92679 0.98476 0.95704 0.90899 0.91170 0.91346 0.85621 0.85317 0.85594 0.76686 0.91073 0.91087 0.91523 0.91447 0.89075 0.94403 0.89157 0.93593 0.95779 0.92561 0.91919 0.92911 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.10 -0.75 5.87 -104.68 -0.61 -1.36 16 3 C -0.10 -0.66 9.69 -39.49 -0.38 -1.05 16 4 C -0.12 -0.83 10.03 -39.64 -0.40 -1.23 16 5 C -0.09 -0.74 9.54 -39.18 -0.37 -1.12 16 6 C -0.13 -1.35 5.87 -104.96 -0.62 -1.97 16 7 C 0.55 7.28 7.77 -12.33 -0.10 7.18 16 8 O -0.54 -9.12 16.35 5.32 0.09 -9.03 16 9 N -0.72 -8.12 5.51 -61.25 -0.34 -8.45 16 10 C 0.12 1.64 5.66 -4.05 -0.02 1.62 16 11 C -0.09 -1.19 5.32 -27.88 -0.15 -1.34 16 12 C -0.14 -2.47 5.11 -100.99 -0.52 -2.99 16 13 C -0.15 -2.85 9.47 -35.78 -0.34 -3.19 16 14 C 0.20 4.78 5.23 -5.10 -0.03 4.75 16 15 N -0.60 -15.22 3.01 -173.56 -0.52 -15.74 16 16 C -0.25 -6.82 9.71 -15.06 -0.15 -6.96 16 17 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 18 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 19 N -0.91 -26.56 11.08 55.49 0.61 -25.94 16 20 Si 0.91 21.88 29.58 -169.99 -5.03 16.85 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 C 0.14 3.05 6.59 -3.43 -0.02 3.03 16 25 C -0.09 -1.62 5.95 -28.09 -0.17 -1.79 16 26 C -0.06 -0.62 9.24 -39.18 -0.36 -0.98 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 31 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 32 H 0.13 0.72 6.41 -52.48 -0.34 0.38 16 33 H 0.40 3.24 6.51 -40.82 -0.27 2.98 16 34 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.80 7.78 -51.93 -0.40 0.40 16 37 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 38 H 0.09 1.57 7.73 -52.49 -0.41 1.17 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 46 H 0.14 1.42 7.65 -52.49 -0.40 1.02 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -32.82 376.87 -10.64 -43.46 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.17 Total: 1.00 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.96 Total: -7.82 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.24 Total: -50.14 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.82 -10.64 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159136932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.132 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds