Wall clock time and date at job start Tue Mar 31 2020 11:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 115.53797 * 2 1 4 4 O 1.21281 * 120.00048 * 214.40913 * 3 2 1 5 5 N 1.34782 * 119.99779 * 34.42044 * 3 2 1 6 6 C 1.46500 * 119.99413 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46520 * 179.97438 * 6 5 3 8 8 C 1.53007 * 109.46864 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.46797 * 180.02562 * 8 7 6 10 10 C 1.36941 * 119.99854 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99635 * 0.02562 * 10 9 8 12 12 C 1.38810 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31621 * 119.99469 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00387 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46884 * 59.99963 * 14 12 10 16 16 H 1.48500 * 109.47311 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47027 * 300.00190 * 14 12 10 18 18 C 1.53043 * 117.47865 * 214.41952 * 2 1 3 19 19 H 1.09003 * 119.41479 * 5.41106 * 18 2 1 20 20 C 1.53436 * 118.57964 * 161.07235 * 18 2 1 21 21 C 1.50976 * 107.03489 * 64.62744 * 20 18 2 22 22 C 1.38782 * 129.72044 * 180.62762 * 21 20 18 23 23 C 1.38011 * 120.31368 * 180.11668 * 22 21 20 24 24 C 1.38254 * 119.87597 * 359.56981 * 23 22 21 25 25 C 1.38021 * 119.88643 * 0.22747 * 24 23 22 26 26 C 1.37807 * 110.46199 * 0.34325 * 21 20 18 27 27 C 1.50948 * 110.48053 * 0.03435 * 26 21 20 28 28 H 1.08999 * 117.43505 * 139.29610 * 27 26 21 29 29 H 1.08996 * 109.47102 * 205.58563 * 1 2 3 30 30 H 1.09009 * 109.46862 * 325.58389 * 1 2 3 31 31 H 1.09001 * 109.47318 * 85.58171 * 1 2 3 32 32 H 0.96999 * 119.99858 * 359.97438 * 5 3 2 33 33 H 1.08994 * 109.47218 * 299.99187 * 6 5 3 34 34 H 1.08997 * 109.47557 * 59.99921 * 6 5 3 35 35 H 1.09000 * 109.47482 * 300.00163 * 7 6 5 36 36 H 1.09001 * 109.47195 * 60.00649 * 7 6 5 37 37 H 1.08994 * 109.47243 * 300.00022 * 8 7 6 38 38 H 1.09001 * 109.46487 * 60.00457 * 8 7 6 39 39 H 0.96996 * 120.00740 * 0.02562 * 9 8 7 40 40 H 0.97006 * 119.99622 * 180.02562 * 13 12 10 41 41 H 1.08999 * 109.91970 * 305.28512 * 20 18 2 42 42 H 1.09000 * 109.92548 * 183.97504 * 20 18 2 43 43 H 1.08009 * 119.84364 * 359.95405 * 22 21 20 44 44 H 1.08000 * 120.06465 * 179.79583 * 23 22 21 45 45 H 1.07995 * 120.05791 * 180.20972 * 24 23 22 46 46 H 1.07996 * 119.84262 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1797 1.3598 0.0000 4 8 3.2230 1.5334 -0.5935 5 7 1.6014 2.3829 0.6598 6 6 2.2333 3.7046 0.6602 7 6 1.3791 4.6779 1.4750 8 6 2.0393 6.0582 1.4760 9 7 1.2217 6.9900 2.2567 10 6 1.6161 8.2937 2.3985 11 1 2.5297 8.6350 1.9345 12 6 0.8417 9.1765 3.1386 13 7 -0.2714 8.7604 3.7045 14 14 1.3800 10.9547 3.3327 15 1 1.4720 11.5928 1.9950 16 1 0.3875 11.6847 4.1617 17 1 2.7082 11.0002 3.9953 18 6 2.2362 -1.1201 -0.7675 19 1 1.6446 -1.8210 -1.3563 20 6 3.7056 -0.9251 -1.1637 21 6 4.5022 -0.8469 0.1164 22 6 5.8653 -0.6644 0.3030 23 6 6.3949 -0.6251 1.5769 24 6 5.5630 -0.7593 2.6730 25 6 4.2067 -0.9366 2.4893 26 6 3.6729 -0.9807 1.2089 27 6 2.2413 -1.1623 0.7661 28 1 1.6371 -1.8910 1.3064 29 1 -0.3633 -0.9269 0.4438 30 1 -0.3633 0.8479 0.5809 31 1 -0.3634 0.0792 -1.0246 32 1 0.7669 2.2441 1.1343 33 1 3.2261 3.6326 1.1044 34 1 2.3190 4.0668 -0.3642 35 1 0.3864 4.7499 1.0306 36 1 1.2932 4.3160 2.4996 37 1 3.0318 5.9859 1.9207 38 1 2.1256 6.4204 0.4516 39 1 0.4010 6.6836 2.6731 40 1 -0.8128 9.3774 4.2214 41 1 3.8183 0.0004 -1.7283 42 1 4.0448 -1.7714 -1.7610 43 1 6.5151 -0.5552 -0.5528 44 1 7.4567 -0.4862 1.7174 45 1 5.9739 -0.7256 3.6712 46 1 3.5576 -1.0418 3.3460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161446649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:38 Heat of formation + Delta-G solvation = 27.520516 kcal Electronic energy + Delta-G solvation = -25403.938694 eV Core-core repulsion = 21873.242494 eV Total energy + Delta-G solvation = -3530.696200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46505 -39.11149 -37.16543 -35.88300 -34.39961 -32.76483 -31.77739 -31.17394 -29.57111 -28.44208 -27.29221 -25.55782 -23.61564 -22.85564 -22.09268 -21.24344 -21.16844 -20.59073 -19.39333 -17.09696 -16.78124 -16.25056 -16.01764 -15.75552 -15.41683 -15.08635 -14.69659 -14.46466 -14.20660 -13.80682 -13.58209 -13.39568 -13.26079 -13.21363 -12.91486 -12.79407 -12.57264 -12.46569 -12.19290 -11.86544 -11.61404 -11.40618 -10.96147 -10.92760 -10.90502 -10.77395 -10.66025 -10.59386 -10.35257 -10.10199 -9.72556 -9.45086 -9.02161 -8.87137 -8.80507 -8.52256 -6.93221 -5.76850 -3.05752 1.17007 1.32503 2.41560 3.11893 3.31994 3.44951 3.48852 3.50239 3.69459 4.03702 4.23449 4.44169 4.59173 4.63674 4.69247 4.82799 4.91132 4.94653 5.09744 5.14430 5.26190 5.32184 5.33384 5.37538 5.44154 5.51823 5.57961 5.61617 5.64979 5.68417 5.76054 5.83953 5.96168 6.02608 6.08438 6.15133 6.21024 6.32881 6.33636 6.41293 6.52510 6.56631 6.79706 6.84088 6.90143 7.52647 7.69969 8.25899 8.42260 9.53203 10.10376 10.45218 11.46165 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.002480 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.658442 B =11288.844739 C =12039.083706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C 0.547 3.453 4 O -0.530 6.530 5 N -0.723 5.723 6 C 0.124 3.876 7 C -0.137 4.137 8 C 0.157 3.843 9 N -0.734 5.734 10 C -0.241 4.241 11 H 0.070 0.930 12 C -0.015 4.015 13 N -0.935 5.935 14 Si 0.909 3.091 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.285 1.285 18 C -0.115 4.115 19 H 0.127 0.873 20 C -0.064 4.064 21 C -0.057 4.057 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.129 4.129 25 C -0.097 4.097 26 C -0.085 4.085 27 C -0.094 4.094 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 -26.867 -7.365 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.135 4.135 3 C 0.333 3.667 4 O -0.407 6.407 5 N -0.375 5.375 6 C 0.001 3.999 7 C -0.175 4.175 8 C 0.029 3.971 9 N -0.378 5.378 10 C -0.372 4.372 11 H 0.088 0.912 12 C -0.210 4.210 13 N -0.584 5.584 14 Si 0.740 3.260 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.212 1.212 18 C -0.134 4.134 19 H 0.145 0.855 20 C -0.101 4.101 21 C -0.057 4.057 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.147 4.147 25 C -0.115 4.115 26 C -0.085 4.085 27 C -0.112 4.112 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.086 -26.562 -7.805 28.346 hybrid contribution -0.479 0.937 0.706 1.268 sum 5.606 -25.624 -7.099 27.174 Atomic orbital electron populations 1.21337 0.89729 1.03019 1.03016 1.22162 0.95512 0.89179 1.06655 1.19404 0.84321 0.84472 0.78527 1.90638 1.22739 1.83629 1.43659 1.46062 1.27377 1.10355 1.53724 1.21332 0.96784 0.80880 1.00917 1.21942 0.99551 0.95962 1.00083 1.20514 0.94061 0.87386 0.95172 1.42330 1.26834 1.07307 1.61316 1.19209 1.05336 0.86164 1.26467 0.91157 1.24750 0.97296 0.98399 1.00591 1.69654 1.15172 1.34809 1.38745 0.86238 0.77480 0.84743 0.77564 1.21227 1.21656 1.21218 1.22977 0.97103 0.99141 0.94156 0.85522 1.20500 0.90156 1.03780 0.95621 1.20352 0.93391 0.96707 0.95266 1.20605 0.93901 1.01073 0.97270 1.21023 0.99735 0.99927 0.92438 1.20975 0.93357 1.01536 0.98873 1.20651 0.95203 0.99904 0.95744 1.19592 0.93093 1.02241 0.93557 1.22137 0.94241 0.99131 0.95699 0.85647 0.91181 0.91414 0.91062 0.76597 0.91520 0.91416 0.91323 0.91361 0.96100 0.96074 0.78304 0.93457 0.86999 0.90530 0.86336 0.85985 0.85962 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.79 37.16 0.36 -0.42 16 2 C -0.13 -1.28 2.68 -153.85 -0.41 -1.69 16 3 C 0.55 7.15 6.82 -10.98 -0.07 7.08 16 4 O -0.53 -8.50 12.60 5.56 0.07 -8.43 16 5 N -0.72 -8.90 5.45 -60.29 -0.33 -9.23 16 6 C 0.12 1.78 5.67 -4.04 -0.02 1.75 16 7 C -0.14 -2.16 5.44 -26.73 -0.15 -2.31 16 8 C 0.16 3.20 6.26 -4.04 -0.03 3.17 16 9 N -0.73 -18.94 5.60 -59.91 -0.34 -19.27 16 10 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 11 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 12 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 13 N -0.94 -28.50 13.06 55.49 0.72 -27.78 16 14 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 C -0.12 -1.04 6.66 -90.16 -0.60 -1.64 16 19 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.06 -0.67 5.77 -27.52 -0.16 -0.83 16 21 C -0.06 -0.68 4.97 -104.44 -0.52 -1.20 16 22 C -0.11 -1.26 10.04 -39.46 -0.40 -1.66 16 23 C -0.11 -1.20 10.05 -39.66 -0.40 -1.60 16 24 C -0.13 -1.37 10.05 -39.65 -0.40 -1.76 16 25 C -0.10 -1.07 10.04 -39.46 -0.40 -1.47 16 26 C -0.08 -0.98 5.40 -104.45 -0.56 -1.54 16 27 C -0.09 -0.88 6.61 -89.65 -0.59 -1.47 16 28 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.37 7.96 -51.93 -0.41 -0.05 16 30 H 0.07 0.44 6.39 -51.92 -0.33 0.11 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.40 4.02 6.77 -40.82 -0.28 3.74 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 41 H 0.11 1.40 6.09 -51.93 -0.32 1.09 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -33.85 374.00 -10.96 -44.81 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.12 Total: 9.77 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -4.59 Total: -13.13 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.06 Total: -56.28 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.07 Total: -8.43 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.85 -10.96 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161446649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.335 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds