Wall clock time and date at job start Tue Mar 31 2020 11:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 115.53797 * 2 1 4 4 O 1.21281 * 120.00048 * 214.40913 * 3 2 1 5 5 N 1.34782 * 119.99779 * 34.42044 * 3 2 1 6 6 C 1.46500 * 119.99413 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46520 * 179.97438 * 6 5 3 8 8 C 1.53007 * 109.46864 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.46797 * 180.02562 * 8 7 6 10 10 C 1.36941 * 119.99854 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99635 * 0.02562 * 10 9 8 12 12 C 1.38810 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31621 * 119.99469 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00387 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46884 * 59.99963 * 14 12 10 16 16 H 1.48500 * 109.47311 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47027 * 300.00190 * 14 12 10 18 18 C 1.53043 * 117.47865 * 214.41952 * 2 1 3 19 19 H 1.09003 * 119.41479 * 5.41106 * 18 2 1 20 20 C 1.53436 * 118.57964 * 161.07235 * 18 2 1 21 21 C 1.50976 * 107.03489 * 64.62744 * 20 18 2 22 22 C 1.38782 * 129.72044 * 180.62762 * 21 20 18 23 23 C 1.38011 * 120.31368 * 180.11668 * 22 21 20 24 24 C 1.38254 * 119.87597 * 359.56981 * 23 22 21 25 25 C 1.38021 * 119.88643 * 0.22747 * 24 23 22 26 26 C 1.37807 * 110.46199 * 0.34325 * 21 20 18 27 27 C 1.50948 * 110.48053 * 0.03435 * 26 21 20 28 28 H 1.08999 * 117.43505 * 139.29610 * 27 26 21 29 29 H 1.08996 * 109.47102 * 205.58563 * 1 2 3 30 30 H 1.09009 * 109.46862 * 325.58389 * 1 2 3 31 31 H 1.09001 * 109.47318 * 85.58171 * 1 2 3 32 32 H 0.96999 * 119.99858 * 359.97438 * 5 3 2 33 33 H 1.08994 * 109.47218 * 299.99187 * 6 5 3 34 34 H 1.08997 * 109.47557 * 59.99921 * 6 5 3 35 35 H 1.09000 * 109.47482 * 300.00163 * 7 6 5 36 36 H 1.09001 * 109.47195 * 60.00649 * 7 6 5 37 37 H 1.08994 * 109.47243 * 300.00022 * 8 7 6 38 38 H 1.09001 * 109.46487 * 60.00457 * 8 7 6 39 39 H 0.96996 * 120.00740 * 0.02562 * 9 8 7 40 40 H 0.97006 * 119.99622 * 180.02562 * 13 12 10 41 41 H 1.08999 * 109.91970 * 305.28512 * 20 18 2 42 42 H 1.09000 * 109.92548 * 183.97504 * 20 18 2 43 43 H 1.08009 * 119.84364 * 359.95405 * 22 21 20 44 44 H 1.08000 * 120.06465 * 179.79583 * 23 22 21 45 45 H 1.07995 * 120.05791 * 180.20972 * 24 23 22 46 46 H 1.07996 * 119.84262 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1797 1.3598 0.0000 4 8 3.2230 1.5334 -0.5935 5 7 1.6014 2.3829 0.6598 6 6 2.2333 3.7046 0.6602 7 6 1.3791 4.6779 1.4750 8 6 2.0393 6.0582 1.4760 9 7 1.2217 6.9900 2.2567 10 6 1.6161 8.2937 2.3985 11 1 2.5297 8.6350 1.9345 12 6 0.8417 9.1765 3.1386 13 7 -0.2714 8.7604 3.7045 14 14 1.3800 10.9547 3.3327 15 1 1.4720 11.5928 1.9950 16 1 0.3875 11.6847 4.1617 17 1 2.7082 11.0002 3.9953 18 6 2.2362 -1.1201 -0.7675 19 1 1.6446 -1.8210 -1.3563 20 6 3.7056 -0.9251 -1.1637 21 6 4.5022 -0.8469 0.1164 22 6 5.8653 -0.6644 0.3030 23 6 6.3949 -0.6251 1.5769 24 6 5.5630 -0.7593 2.6730 25 6 4.2067 -0.9366 2.4893 26 6 3.6729 -0.9807 1.2089 27 6 2.2413 -1.1623 0.7661 28 1 1.6371 -1.8910 1.3064 29 1 -0.3633 -0.9269 0.4438 30 1 -0.3633 0.8479 0.5809 31 1 -0.3634 0.0792 -1.0246 32 1 0.7669 2.2441 1.1343 33 1 3.2261 3.6326 1.1044 34 1 2.3190 4.0668 -0.3642 35 1 0.3864 4.7499 1.0306 36 1 1.2932 4.3160 2.4996 37 1 3.0318 5.9859 1.9207 38 1 2.1256 6.4204 0.4516 39 1 0.4010 6.6836 2.6731 40 1 -0.8128 9.3774 4.2214 41 1 3.8183 0.0004 -1.7283 42 1 4.0448 -1.7714 -1.7610 43 1 6.5151 -0.5552 -0.5528 44 1 7.4567 -0.4862 1.7174 45 1 5.9739 -0.7256 3.6712 46 1 3.5576 -1.0418 3.3460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161446649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:37 Heat of formation + Delta-G solvation = 7.481418 kcal Electronic energy + Delta-G solvation = -25404.807654 eV Core-core repulsion = 21873.242494 eV Total energy + Delta-G solvation = -3531.565161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27043 -40.07086 -38.05079 -37.33023 -35.92706 -34.00055 -33.14966 -32.00384 -31.18872 -29.20665 -28.00743 -27.13552 -25.04556 -23.87881 -23.25136 -22.61893 -22.08895 -21.31439 -20.42384 -19.12586 -17.64646 -17.25906 -16.99621 -16.84825 -16.52964 -16.34165 -15.91154 -15.61302 -15.33972 -15.18452 -14.99195 -14.57367 -14.30434 -14.13602 -13.92009 -13.71079 -13.53919 -13.32514 -13.15004 -13.02214 -12.79533 -12.63237 -12.52829 -12.45187 -12.17678 -12.11122 -12.07871 -11.80567 -11.73044 -11.39709 -11.06381 -10.95603 -10.41750 -10.10987 -9.63682 -9.32918 -9.04141 -7.97894 -5.27507 0.35450 0.49421 1.46759 1.49245 1.49991 1.56202 2.13071 2.52767 2.55415 2.92315 3.31058 3.35678 3.51876 3.67547 3.74032 3.86771 3.98263 4.04471 4.13286 4.15038 4.20969 4.25092 4.39487 4.44358 4.57866 4.68023 4.68510 4.69238 4.72986 4.82561 4.86845 4.88425 4.93663 4.97812 5.07644 5.17203 5.24784 5.27734 5.28182 5.36285 5.46561 5.48969 5.54149 5.59765 5.73592 6.11327 6.24639 6.56390 7.27916 7.31078 8.04964 8.29624 9.25430 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.002480 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.658442 B =11288.844739 C =12039.083706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.135 4.135 3 C 0.538 3.462 4 O -0.565 6.565 5 N -0.717 5.717 6 C 0.138 3.862 7 C -0.117 4.117 8 C 0.153 3.847 9 N -0.746 5.746 10 C -0.253 4.253 11 H 0.074 0.926 12 C -0.073 4.073 13 N -0.968 5.968 14 Si 0.976 3.024 15 H -0.277 1.277 16 H -0.292 1.292 17 H -0.278 1.278 18 C -0.112 4.112 19 H 0.158 0.842 20 C -0.066 4.066 21 C -0.078 4.078 22 C -0.132 4.132 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.111 4.111 26 C -0.102 4.102 27 C -0.091 4.091 28 H 0.153 0.847 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.019 0.981 38 H 0.022 0.978 39 H 0.376 0.624 40 H 0.253 0.747 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.125 0.875 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 -27.993 -7.348 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C 0.326 3.674 4 O -0.444 6.444 5 N -0.370 5.370 6 C 0.013 3.987 7 C -0.155 4.155 8 C 0.026 3.974 9 N -0.389 5.389 10 C -0.385 4.385 11 H 0.092 0.908 12 C -0.266 4.266 13 N -0.618 5.618 14 Si 0.804 3.196 15 H -0.203 1.203 16 H -0.218 1.218 17 H -0.204 1.204 18 C -0.130 4.130 19 H 0.175 0.825 20 C -0.103 4.103 21 C -0.078 4.078 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.157 4.157 25 C -0.129 4.129 26 C -0.102 4.102 27 C -0.109 4.109 28 H 0.170 0.830 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.208 0.792 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.143 0.857 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.462 -27.714 -7.802 29.305 hybrid contribution -0.179 1.262 0.669 1.440 sum 5.283 -26.452 -7.132 27.901 Atomic orbital electron populations 1.21391 0.87268 1.04355 1.03725 1.22220 0.97024 0.87028 1.07523 1.20108 0.83960 0.85731 0.77642 1.90636 1.24383 1.84389 1.45035 1.45960 1.27765 1.09463 1.53789 1.21006 0.95932 0.81748 1.00001 1.21691 0.99553 0.93585 1.00674 1.20655 0.93665 0.88892 0.94153 1.42522 1.27128 1.07406 1.61873 1.19613 1.05343 0.87547 1.25994 0.90820 1.25592 0.97573 1.02616 1.00788 1.69803 1.16301 1.36044 1.39692 0.85187 0.77115 0.79659 0.77654 1.20343 1.21804 1.20391 1.23163 0.96316 0.99125 0.94363 0.82476 1.20509 0.91539 1.03141 0.95098 1.20671 0.93832 0.97101 0.96228 1.20891 0.94370 1.01654 0.98057 1.21325 1.00879 0.99621 0.92271 1.21307 0.93494 1.01126 0.99809 1.20967 0.95777 0.99884 0.96293 1.19963 0.94444 1.02163 0.93630 1.22294 0.93385 0.99130 0.96081 0.82987 0.88872 0.91262 0.90488 0.75115 0.92890 0.92042 0.90546 0.91002 0.96340 0.96013 0.79190 0.93812 0.89541 0.88899 0.85740 0.84175 0.84077 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.79 71.98 0.70 -0.46 16 2 C -0.13 -2.33 2.68 -51.76 -0.14 -2.47 16 3 C 0.54 13.70 6.82 87.66 0.60 14.29 16 4 O -0.57 -18.42 12.60 -3.03 -0.04 -18.46 16 5 N -0.72 -16.94 5.45 -463.05 -2.53 -19.47 16 6 C 0.14 3.88 5.67 86.38 0.49 4.38 16 7 C -0.12 -3.60 5.44 30.60 0.17 -3.43 16 8 C 0.15 6.23 6.26 86.38 0.54 6.77 16 9 N -0.75 -38.59 5.60 -343.44 -1.92 -40.52 16 10 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 11 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 12 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 13 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 14 Si 0.98 46.40 29.55 68.60 2.03 48.42 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 C -0.11 -1.77 6.66 -10.49 -0.07 -1.84 16 19 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 20 C -0.07 -1.37 5.77 30.08 0.17 -1.20 16 21 C -0.08 -1.87 4.97 -19.75 -0.10 -1.97 16 22 C -0.13 -3.08 10.04 22.35 0.22 -2.86 16 23 C -0.12 -2.60 10.05 22.22 0.22 -2.38 16 24 C -0.14 -2.86 10.05 22.22 0.22 -2.64 16 25 C -0.11 -2.37 10.04 22.35 0.22 -2.14 16 26 C -0.10 -2.27 5.40 -19.75 -0.11 -2.37 16 27 C -0.09 -1.50 6.61 -10.17 -0.07 -1.57 16 28 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 0.58 7.96 -2.39 -0.02 0.56 16 30 H 0.07 0.71 6.39 -2.38 -0.02 0.69 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.41 7.58 6.77 -92.71 -0.63 6.95 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.38 20.25 7.67 -92.71 -0.71 19.54 16 40 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 41 H 0.09 2.25 6.09 -2.39 -0.01 2.23 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -73.16 374.00 1.87 -71.29 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.35 Total: 35.03 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.39 Total: -17.29 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -4.17 Total: -118.99 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.04 Total: -18.46 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -73.16 1.87 -71.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161446649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.774 kcal (2) G-P(sol) polarization free energy of solvation -73.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds