Wall clock time and date at job start Tue Mar 31 2020 11:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 115.53530 * 2 1 4 4 O 1.21283 * 119.99488 * 214.41512 * 3 2 1 5 5 N 1.34777 * 120.00290 * 34.41952 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27728 * 5 3 2 7 7 C 1.52996 * 109.47059 * 179.72339 * 6 5 3 8 8 C 1.53003 * 109.47301 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47060 * 179.97438 * 8 7 6 10 10 C 1.36937 * 119.99660 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00031 * 0.02562 * 10 9 8 12 12 C 1.38810 * 119.99679 * 179.97438 * 10 9 8 13 13 N 1.31616 * 120.00282 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99813 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46685 * 60.00598 * 14 12 10 16 16 H 1.48502 * 109.46942 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47020 * 300.00306 * 14 12 10 18 18 C 1.53039 * 117.48143 * 214.41227 * 2 1 3 19 19 H 1.08998 * 119.41546 * 139.49441 * 18 2 1 20 20 C 1.53439 * 118.57150 * 343.84315 * 18 2 1 21 21 C 1.50965 * 107.03610 * 296.99681 * 20 18 2 22 22 C 1.38785 * 129.72258 * 179.68579 * 21 20 18 23 23 C 1.38013 * 120.31346 * 180.02562 * 22 21 20 24 24 C 1.38248 * 119.87749 * 0.02562 * 23 22 21 25 25 C 1.38011 * 119.89004 * 359.97438 * 24 23 22 26 26 C 1.37809 * 110.46523 * 359.71011 * 21 20 18 27 27 C 1.50944 * 110.47914 * 359.91871 * 26 21 20 28 28 H 1.09001 * 117.44038 * 220.72595 * 27 26 21 29 29 H 1.09000 * 109.47509 * 85.58452 * 1 2 3 30 30 H 1.09005 * 109.47045 * 205.58794 * 1 2 3 31 31 H 1.09003 * 109.47598 * 325.58269 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 33 33 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 34 34 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 35 35 H 1.09004 * 109.47066 * 299.99732 * 7 6 5 36 36 H 1.09000 * 109.47665 * 59.99541 * 7 6 5 37 37 H 1.08990 * 109.47021 * 299.99845 * 8 7 6 38 38 H 1.09002 * 109.46620 * 60.00037 * 8 7 6 39 39 H 0.96995 * 119.99904 * 0.02562 * 9 8 7 40 40 H 0.96997 * 120.00383 * 179.97438 * 13 12 10 41 41 H 1.08994 * 109.92276 * 56.34370 * 20 18 2 42 42 H 1.09003 * 109.92106 * 177.65609 * 20 18 2 43 43 H 1.08004 * 119.84053 * 0.04880 * 22 21 20 44 44 H 1.08001 * 120.06222 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.05860 * 180.02562 * 24 23 22 46 46 H 1.07994 * 119.84766 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1796 1.3598 0.0000 4 8 3.2229 1.5334 -0.5937 5 7 1.6014 2.3830 0.6597 6 6 2.2298 3.7063 0.6546 7 6 1.3732 4.6808 1.4653 8 6 2.0298 6.0628 1.4605 9 7 1.2091 6.9961 2.2363 10 6 1.6006 8.3011 2.3733 11 1 2.5141 8.6424 1.9092 12 6 0.8228 9.1855 3.1080 13 7 -0.2907 8.7697 3.6732 14 14 1.3564 10.9660 3.2943 15 1 1.4488 11.5979 1.9536 16 1 0.3613 11.6973 4.1191 17 1 2.6835 11.0181 3.9587 18 6 2.2362 -1.1201 -0.7673 19 1 3.1237 -0.8885 -1.3562 20 6 1.4266 -2.3618 -1.1634 21 6 0.9781 -3.0244 0.1168 22 6 0.2179 -4.1704 0.3033 23 6 -0.0820 -4.6077 1.5775 24 6 0.3763 -3.9010 2.6738 25 6 1.1325 -2.7612 2.4903 26 6 1.4355 -2.3202 1.2096 27 6 2.2359 -1.1195 0.7669 28 1 3.1427 -0.8867 1.3251 29 1 -0.3634 0.0791 -1.0246 30 1 -0.3633 -0.9269 0.4439 31 1 -0.3634 0.8478 0.5808 32 1 0.7668 2.2442 1.1343 33 1 3.2227 3.6387 1.0993 34 1 2.3149 4.0642 -0.3714 35 1 0.3803 4.7484 1.0206 36 1 1.2880 4.3230 2.4914 37 1 3.0224 5.9949 1.9055 38 1 2.1151 6.4208 0.4345 39 1 0.3889 6.6894 2.6535 40 1 -0.8340 9.3876 4.1869 41 1 0.5585 -2.0668 -1.7527 42 1 2.0525 -3.0462 -1.7362 43 1 -0.1405 -4.7228 -0.5528 44 1 -0.6743 -5.4998 1.7180 45 1 0.1437 -4.2408 3.6723 46 1 1.4898 -2.2095 3.3472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161446650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:42 Heat of formation + Delta-G solvation = 21.408777 kcal Electronic energy + Delta-G solvation = -24729.109009 eV Core-core repulsion = 21198.147783 eV Total energy + Delta-G solvation = -3530.961225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66696 -39.52341 -37.39721 -35.99299 -34.39718 -32.56351 -31.91096 -31.21345 -29.64196 -28.71345 -27.89677 -25.54664 -23.94393 -22.81469 -22.09321 -21.28526 -21.05490 -20.76798 -19.05099 -17.57427 -16.96716 -16.57801 -16.18528 -15.69764 -15.48843 -15.36898 -14.87141 -14.46865 -14.31919 -13.96151 -13.78383 -13.59333 -13.28018 -13.26383 -13.01035 -12.77253 -12.59213 -12.43356 -12.35840 -12.03020 -11.67175 -11.65367 -11.20548 -10.96117 -10.91906 -10.80118 -10.65480 -10.61094 -10.26645 -10.12986 -9.86842 -9.69042 -9.12378 -9.08928 -8.88020 -8.82548 -6.94161 -5.77472 -3.06527 0.91222 1.01461 2.33179 2.93704 3.22608 3.44524 3.48447 3.49761 3.55610 4.01877 4.14765 4.31082 4.49573 4.58400 4.62116 4.66453 4.71846 4.73698 4.92059 5.10054 5.11885 5.20873 5.29296 5.32240 5.38849 5.44525 5.47119 5.52383 5.56975 5.61510 5.63877 5.67885 5.82580 5.90483 5.97841 6.04967 6.07991 6.15935 6.18150 6.29592 6.31058 6.42732 6.61930 6.77922 6.82231 7.43178 7.69305 8.12785 8.41473 9.52473 10.09483 10.44235 11.45453 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025716 B = 0.001995 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.563839 B =14028.714266 C =14689.141451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.550 3.450 4 O -0.539 6.539 5 N -0.720 5.720 6 C 0.122 3.878 7 C -0.138 4.138 8 C 0.157 3.843 9 N -0.734 5.734 10 C -0.241 4.241 11 H 0.071 0.929 12 C -0.015 4.015 13 N -0.935 5.935 14 Si 0.909 3.091 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.286 1.286 18 C -0.120 4.120 19 H 0.135 0.865 20 C -0.056 4.056 21 C -0.089 4.089 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.098 4.098 26 C -0.064 4.064 27 C -0.096 4.096 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.402 0.598 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 -30.325 -6.905 31.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.125 4.125 3 C 0.336 3.664 4 O -0.416 6.416 5 N -0.372 5.372 6 C -0.001 4.001 7 C -0.176 4.176 8 C 0.028 3.972 9 N -0.378 5.378 10 C -0.372 4.372 11 H 0.089 0.911 12 C -0.211 4.211 13 N -0.583 5.583 14 Si 0.740 3.260 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.212 1.212 18 C -0.139 4.139 19 H 0.153 0.847 20 C -0.092 4.092 21 C -0.089 4.089 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.116 4.116 26 C -0.064 4.064 27 C -0.115 4.115 28 H 0.139 0.861 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.237 0.763 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.217 0.783 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.631 -30.013 -7.341 30.904 hybrid contribution -0.438 0.906 0.670 1.209 sum 0.193 -29.107 -6.671 29.862 Atomic orbital electron populations 1.21431 0.90480 1.03162 1.02800 1.21483 0.96051 0.88959 1.05984 1.19238 0.84252 0.84461 0.78469 1.90705 1.23102 1.83960 1.43837 1.46022 1.27528 1.10205 1.53396 1.21394 0.96905 0.80661 1.01169 1.21948 0.99579 0.95939 1.00132 1.20518 0.94062 0.87318 0.95268 1.42329 1.26802 1.07107 1.61553 1.19202 1.05305 0.86011 1.26669 0.91135 1.24759 0.97282 0.98405 1.00637 1.69646 1.15039 1.34780 1.38875 0.86235 0.77457 0.84749 0.77556 1.21219 1.21667 1.21226 1.22980 1.01848 0.94712 0.94342 0.84746 1.20325 0.99813 0.94132 0.94973 1.20487 0.97797 0.95221 0.95405 1.20641 0.98842 0.95851 0.97434 1.21051 1.00061 0.99973 0.92362 1.21051 0.98447 0.95409 0.99061 1.20752 0.98213 0.96586 0.96030 1.19580 0.98196 0.95196 0.93394 1.21516 1.00161 0.94281 0.95543 0.86053 0.91313 0.90967 0.91687 0.76301 0.91273 0.91223 0.91259 0.91270 0.96044 0.96036 0.78297 0.93446 0.89530 0.89249 0.86093 0.85795 0.85722 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 8.85 37.16 0.33 -0.68 16 2 C -0.12 -1.22 2.60 -155.66 -0.41 -1.62 16 3 C 0.55 7.12 7.39 -10.98 -0.08 7.04 16 4 O -0.54 -8.86 16.33 5.55 0.09 -8.77 16 5 N -0.72 -8.60 5.45 -60.30 -0.33 -8.93 16 6 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 7 C -0.14 -2.11 5.44 -26.73 -0.15 -2.26 16 8 C 0.16 3.14 6.26 -4.04 -0.03 3.11 16 9 N -0.73 -18.76 5.60 -59.91 -0.34 -19.09 16 10 C -0.24 -6.83 9.99 -15.06 -0.15 -6.99 16 11 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 12 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 13 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 14 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 C -0.12 -1.12 6.52 -90.16 -0.59 -1.71 16 19 H 0.13 1.34 7.80 -51.93 -0.40 0.94 16 20 C -0.06 -0.41 5.99 -27.53 -0.16 -0.57 16 21 C -0.09 -0.72 5.19 -104.45 -0.54 -1.27 16 22 C -0.11 -0.78 10.04 -39.46 -0.40 -1.18 16 23 C -0.12 -0.78 10.05 -39.66 -0.40 -1.18 16 24 C -0.12 -0.87 10.04 -39.66 -0.40 -1.27 16 25 C -0.10 -0.81 10.04 -39.46 -0.40 -1.20 16 26 C -0.06 -0.57 4.72 -104.45 -0.49 -1.06 16 27 C -0.10 -0.93 6.55 -91.46 -0.60 -1.53 16 28 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.60 5.85 -51.93 -0.30 0.30 16 31 H 0.06 0.50 6.39 -51.93 -0.33 0.16 16 32 H 0.40 3.95 6.77 -40.82 -0.28 3.67 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -33.31 376.24 -10.86 -44.17 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.08 Total: 8.32 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -4.57 Total: -11.24 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.06 Total: -55.69 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.31 -10.86 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161446650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.581 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds