Wall clock time and date at job start Tue Mar 31 2020 11:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 115.53530 * 2 1 4 4 O 1.21283 * 119.99488 * 214.41512 * 3 2 1 5 5 N 1.34777 * 120.00290 * 34.41952 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27728 * 5 3 2 7 7 C 1.52996 * 109.47059 * 179.72339 * 6 5 3 8 8 C 1.53003 * 109.47301 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47060 * 179.97438 * 8 7 6 10 10 C 1.36937 * 119.99660 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00031 * 0.02562 * 10 9 8 12 12 C 1.38810 * 119.99679 * 179.97438 * 10 9 8 13 13 N 1.31616 * 120.00282 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99813 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46685 * 60.00598 * 14 12 10 16 16 H 1.48502 * 109.46942 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47020 * 300.00306 * 14 12 10 18 18 C 1.53039 * 117.48143 * 214.41227 * 2 1 3 19 19 H 1.08998 * 119.41546 * 139.49441 * 18 2 1 20 20 C 1.53439 * 118.57150 * 343.84315 * 18 2 1 21 21 C 1.50965 * 107.03610 * 296.99681 * 20 18 2 22 22 C 1.38785 * 129.72258 * 179.68579 * 21 20 18 23 23 C 1.38013 * 120.31346 * 180.02562 * 22 21 20 24 24 C 1.38248 * 119.87749 * 0.02562 * 23 22 21 25 25 C 1.38011 * 119.89004 * 359.97438 * 24 23 22 26 26 C 1.37809 * 110.46523 * 359.71011 * 21 20 18 27 27 C 1.50944 * 110.47914 * 359.91871 * 26 21 20 28 28 H 1.09001 * 117.44038 * 220.72595 * 27 26 21 29 29 H 1.09000 * 109.47509 * 85.58452 * 1 2 3 30 30 H 1.09005 * 109.47045 * 205.58794 * 1 2 3 31 31 H 1.09003 * 109.47598 * 325.58269 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 33 33 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 34 34 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 35 35 H 1.09004 * 109.47066 * 299.99732 * 7 6 5 36 36 H 1.09000 * 109.47665 * 59.99541 * 7 6 5 37 37 H 1.08990 * 109.47021 * 299.99845 * 8 7 6 38 38 H 1.09002 * 109.46620 * 60.00037 * 8 7 6 39 39 H 0.96995 * 119.99904 * 0.02562 * 9 8 7 40 40 H 0.96997 * 120.00383 * 179.97438 * 13 12 10 41 41 H 1.08994 * 109.92276 * 56.34370 * 20 18 2 42 42 H 1.09003 * 109.92106 * 177.65609 * 20 18 2 43 43 H 1.08004 * 119.84053 * 0.04880 * 22 21 20 44 44 H 1.08001 * 120.06222 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.05860 * 180.02562 * 24 23 22 46 46 H 1.07994 * 119.84766 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1796 1.3598 0.0000 4 8 3.2229 1.5334 -0.5937 5 7 1.6014 2.3830 0.6597 6 6 2.2298 3.7063 0.6546 7 6 1.3732 4.6808 1.4653 8 6 2.0298 6.0628 1.4605 9 7 1.2091 6.9961 2.2363 10 6 1.6006 8.3011 2.3733 11 1 2.5141 8.6424 1.9092 12 6 0.8228 9.1855 3.1080 13 7 -0.2907 8.7697 3.6732 14 14 1.3564 10.9660 3.2943 15 1 1.4488 11.5979 1.9536 16 1 0.3613 11.6973 4.1191 17 1 2.6835 11.0181 3.9587 18 6 2.2362 -1.1201 -0.7673 19 1 3.1237 -0.8885 -1.3562 20 6 1.4266 -2.3618 -1.1634 21 6 0.9781 -3.0244 0.1168 22 6 0.2179 -4.1704 0.3033 23 6 -0.0820 -4.6077 1.5775 24 6 0.3763 -3.9010 2.6738 25 6 1.1325 -2.7612 2.4903 26 6 1.4355 -2.3202 1.2096 27 6 2.2359 -1.1195 0.7669 28 1 3.1427 -0.8867 1.3251 29 1 -0.3634 0.0791 -1.0246 30 1 -0.3633 -0.9269 0.4439 31 1 -0.3634 0.8478 0.5808 32 1 0.7668 2.2442 1.1343 33 1 3.2227 3.6387 1.0993 34 1 2.3149 4.0642 -0.3714 35 1 0.3803 4.7484 1.0206 36 1 1.2880 4.3230 2.4914 37 1 3.0224 5.9949 1.9055 38 1 2.1151 6.4208 0.4345 39 1 0.3889 6.6894 2.6535 40 1 -0.8340 9.3876 4.1869 41 1 0.5585 -2.0668 -1.7527 42 1 2.0525 -3.0462 -1.7362 43 1 -0.1405 -4.7228 -0.5528 44 1 -0.6743 -5.4998 1.7180 45 1 0.1437 -4.2408 3.6723 46 1 1.4898 -2.2095 3.3472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161446650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:41 Heat of formation + Delta-G solvation = 1.986131 kcal Electronic energy + Delta-G solvation = -24729.951238 eV Core-core repulsion = 21198.147783 eV Total energy + Delta-G solvation = -3531.803454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38588 -40.45494 -38.13051 -37.43546 -35.97173 -33.89028 -32.97891 -31.94874 -31.14433 -29.47230 -28.49445 -27.12652 -25.12647 -24.10675 -22.91752 -22.62162 -21.94745 -21.43127 -20.02134 -19.12075 -18.29483 -17.33317 -17.20901 -16.81247 -16.58796 -16.11736 -16.04017 -15.63433 -15.47276 -15.29413 -14.84946 -14.65143 -14.41017 -14.33040 -13.84652 -13.78637 -13.47577 -13.34223 -13.23202 -12.97809 -12.79611 -12.71620 -12.60503 -12.44776 -12.23409 -12.10978 -12.08173 -11.81114 -11.74195 -11.35951 -11.04038 -10.94800 -10.84328 -10.19178 -9.66663 -9.41821 -9.03216 -7.97264 -5.26735 0.33387 0.47294 1.37193 1.47116 1.50353 1.56487 1.95895 2.50216 2.55580 2.92627 3.29594 3.36256 3.46592 3.58093 3.72519 3.78458 3.87919 4.04743 4.07061 4.16117 4.20280 4.25547 4.33271 4.43913 4.55324 4.63579 4.69079 4.69952 4.71967 4.78158 4.81459 4.85579 4.87026 4.89938 5.04217 5.09927 5.20388 5.24672 5.27466 5.28999 5.35768 5.47650 5.55343 5.63511 5.72213 6.09954 6.25173 6.44205 7.11407 7.31618 8.06064 8.30103 9.25975 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025716 B = 0.001995 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.563839 B =14028.714266 C =14689.141451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.123 4.123 3 C 0.548 3.452 4 O -0.578 6.578 5 N -0.711 5.711 6 C 0.133 3.867 7 C -0.118 4.118 8 C 0.152 3.848 9 N -0.747 5.747 10 C -0.251 4.251 11 H 0.075 0.925 12 C -0.076 4.076 13 N -0.968 5.968 14 Si 0.976 3.024 15 H -0.277 1.277 16 H -0.293 1.293 17 H -0.278 1.278 18 C -0.121 4.121 19 H 0.123 0.877 20 C -0.050 4.050 21 C -0.096 4.096 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.080 4.080 27 C -0.098 4.098 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.023 0.977 39 H 0.376 0.624 40 H 0.253 0.747 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -31.745 -7.292 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.126 4.126 3 C 0.335 3.665 4 O -0.459 6.459 5 N -0.363 5.363 6 C 0.009 3.991 7 C -0.157 4.157 8 C 0.025 3.975 9 N -0.390 5.390 10 C -0.383 4.383 11 H 0.093 0.907 12 C -0.268 4.268 13 N -0.619 5.619 14 Si 0.804 3.196 15 H -0.203 1.203 16 H -0.219 1.219 17 H -0.204 1.204 18 C -0.139 4.139 19 H 0.141 0.859 20 C -0.087 4.087 21 C -0.096 4.096 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.130 4.130 26 C -0.081 4.081 27 C -0.116 4.116 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.251 0.749 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.208 0.792 40 H 0.061 0.939 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.159 0.841 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.021 -31.458 -7.737 32.395 hybrid contribution -0.183 1.275 0.785 1.508 sum -0.204 -30.183 -6.952 30.974 Atomic orbital electron populations 1.21427 0.88934 1.03578 1.03441 1.21395 0.96934 0.87344 1.06951 1.19726 0.83724 0.85470 0.77542 1.90682 1.24907 1.84717 1.45547 1.45897 1.27825 1.09389 1.53180 1.21135 0.96355 0.81197 1.00444 1.21702 0.99543 0.93619 1.00786 1.20672 0.93739 0.88756 0.94290 1.42532 1.27119 1.07221 1.62110 1.19613 1.05264 0.87395 1.26028 0.90709 1.25608 0.97607 1.02643 1.00948 1.69797 1.16192 1.35973 1.39903 0.85180 0.77075 0.79681 0.77628 1.20347 1.21925 1.20384 1.23036 1.01714 0.95090 0.94105 0.85942 1.20328 1.00130 0.93201 0.95005 1.20625 0.98051 0.95650 0.95242 1.20930 0.98337 0.95506 0.98452 1.21397 0.99628 1.00469 0.92037 1.21325 0.97945 0.94957 1.00289 1.20928 0.98820 0.97343 0.95957 1.19593 0.99099 0.95220 0.94140 1.21489 0.99868 0.94453 0.95810 0.87289 0.90566 0.90670 0.91089 0.74873 0.91888 0.91680 0.90657 0.90830 0.96010 0.95919 0.79229 0.93862 0.88348 0.87918 0.84076 0.83481 0.83993 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.85 71.98 0.64 -1.14 16 2 C -0.12 -2.41 2.60 -52.93 -0.14 -2.55 16 3 C 0.55 14.15 7.39 87.66 0.65 14.80 16 4 O -0.58 -19.39 16.33 -3.04 -0.05 -19.43 16 5 N -0.71 -16.52 5.45 -463.07 -2.53 -19.05 16 6 C 0.13 3.59 5.67 86.38 0.49 4.08 16 7 C -0.12 -3.54 5.44 30.59 0.17 -3.37 16 8 C 0.15 6.05 6.26 86.38 0.54 6.59 16 9 N -0.75 -38.22 5.60 -343.45 -1.92 -40.14 16 10 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 11 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 12 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 13 N -0.97 -59.22 13.06 21.65 0.28 -58.93 16 14 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 16 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 C -0.12 -2.21 6.52 -10.49 -0.07 -2.28 16 19 H 0.12 2.52 7.80 -2.39 -0.02 2.50 16 20 C -0.05 -0.66 5.99 30.08 0.18 -0.48 16 21 C -0.10 -1.40 5.19 -19.75 -0.10 -1.50 16 22 C -0.11 -1.35 10.04 22.35 0.22 -1.12 16 23 C -0.12 -1.28 10.05 22.22 0.22 -1.06 16 24 C -0.13 -1.59 10.04 22.22 0.22 -1.36 16 25 C -0.11 -1.76 10.04 22.35 0.22 -1.53 16 26 C -0.08 -1.38 4.72 -19.75 -0.09 -1.47 16 27 C -0.10 -1.88 6.55 -11.34 -0.07 -1.95 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.13 5.85 -2.38 -0.01 1.12 16 31 H 0.07 0.97 6.39 -2.39 -0.02 0.96 16 32 H 0.41 7.63 6.77 -92.71 -0.63 7.00 16 33 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.38 20.09 7.67 -92.71 -0.71 19.38 16 40 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.10 1.06 7.93 -2.39 -0.02 1.04 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 44 H 0.15 0.87 8.06 -2.91 -0.02 0.84 16 45 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 46 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -70.95 376.24 1.85 -69.10 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.35 Total: 31.79 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 4.39 Total: -11.67 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -4.17 Total: -118.12 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -70.95 1.85 -69.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161446650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.085 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds