Wall clock time and date at job start Tue Mar 31 2020 10:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38363 * 119.85893 * 2 1 4 4 C 1.37954 * 120.14659 * 179.97438 * 3 2 1 5 5 C 1.39570 * 119.85160 * 359.97438 * 4 3 2 6 6 C 1.47850 * 120.14184 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00283 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99863 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99627 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46653 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46625 * 180.02562 * 10 9 8 12 12 C 1.29449 * 117.69823 * 95.00277 * 11 10 9 13 13 C 1.50324 * 123.65415 * 181.13891 * 12 11 10 14 14 N 1.47112 * 109.10493 * 348.53287 * 13 12 11 15 15 C 1.36941 * 121.51266 * 223.16067 * 14 13 12 16 16 H 1.07998 * 119.99815 * 156.19092 * 15 14 13 17 17 C 1.38811 * 120.00024 * 336.18756 * 15 14 13 18 18 N 1.31620 * 119.99972 * 344.48080 * 17 15 14 19 19 Si 1.86793 * 120.00126 * 164.48826 * 17 15 14 20 20 H 1.48501 * 109.47376 * 59.99793 * 19 17 15 21 21 H 1.48500 * 109.47635 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47046 * 300.00142 * 19 17 15 23 23 C 1.47344 * 117.11151 * 43.35151 * 14 13 12 24 24 C 1.49977 * 117.69151 * 274.97417 * 11 10 9 25 25 C 1.39578 * 119.71772 * 0.25514 * 5 4 3 26 26 C 1.37961 * 119.84679 * 359.50965 * 25 5 4 27 27 H 1.09009 * 109.46801 * 89.99852 * 1 2 3 28 28 H 1.08995 * 109.47710 * 209.99763 * 1 2 3 29 29 H 1.09001 * 109.47224 * 330.00824 * 1 2 3 30 30 H 1.07998 * 119.91928 * 359.97048 * 3 2 1 31 31 H 1.08001 * 120.07055 * 179.97438 * 4 3 2 32 32 H 0.96995 * 119.99900 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.46857 * 60.00329 * 9 8 6 34 34 H 1.08993 * 109.47459 * 299.99762 * 9 8 6 35 35 H 1.08992 * 109.46993 * 60.00173 * 10 9 8 36 36 H 1.09004 * 109.47004 * 299.99673 * 10 9 8 37 37 H 1.08002 * 118.17287 * 0.85287 * 12 11 10 38 38 H 1.08995 * 109.52453 * 108.64505 * 13 12 11 39 39 H 1.08998 * 109.52251 * 228.83655 * 13 12 11 40 40 H 0.97000 * 119.99856 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.77728 * 178.43237 * 23 14 13 42 42 H 1.08993 * 109.77708 * 57.62166 * 23 14 13 43 43 H 1.08991 * 109.31402 * 281.29457 * 24 11 10 44 44 H 1.08996 * 109.31268 * 40.72531 * 24 11 10 45 45 H 1.08000 * 120.07677 * 179.72740 * 25 5 4 46 46 H 1.08000 * 119.92900 * 180.23090 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5754 1.2069 0.0005 5 6 4.2762 -0.0001 0.0016 6 6 5.7547 -0.0002 0.0016 7 8 6.3625 1.0524 0.0002 8 7 6.4285 -1.1675 0.0021 9 6 7.8935 -1.1675 0.0016 10 6 8.4034 -2.6101 0.0030 11 6 9.9104 -2.6101 0.0031 12 6 10.5121 -2.7089 1.1450 13 6 12.0070 -2.6976 1.3027 14 7 12.6319 -2.8372 -0.0218 15 6 13.7042 -3.6647 -0.2236 16 1 13.9079 -4.0537 -1.2102 17 6 14.5294 -4.0034 0.8400 18 7 14.4802 -3.3102 1.9578 19 14 15.7098 -5.4428 0.6849 20 1 16.6525 -5.1915 -0.4347 21 1 16.4733 -5.5955 1.9494 22 1 14.9424 -6.6855 0.4162 23 6 12.0569 -2.0444 -1.1225 24 6 10.6074 -2.4962 -1.3200 25 6 3.5753 -1.2072 -0.0032 26 6 2.1957 -1.2001 0.0012 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8901 0.5137 30 1 1.6522 2.1332 -0.0005 31 1 4.1118 2.1442 0.0001 32 1 5.9434 -2.0074 0.0029 33 1 8.2571 -0.6531 0.8911 34 1 8.2565 -0.6543 -0.8888 35 1 8.0397 -3.1248 -0.8862 36 1 8.0404 -3.1229 0.8938 37 1 9.9062 -2.8001 2.0344 38 1 12.3180 -1.7578 1.7589 39 1 12.3127 -3.5300 1.9364 40 1 15.0566 -3.5471 2.7012 41 1 12.6247 -2.2167 -2.0369 42 1 12.0815 -0.9853 -0.8662 43 1 10.5966 -3.4657 -1.8178 44 1 10.0847 -1.7691 -1.9414 45 1 4.1117 -2.1445 -0.0069 46 1 1.6520 -2.1333 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161766394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:55 Heat of formation + Delta-G solvation = 15.537278 kcal Electronic energy + Delta-G solvation = -24608.539024 eV Core-core repulsion = 21077.323191 eV Total energy + Delta-G solvation = -3531.215833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43243 -38.81030 -37.84059 -35.46116 -33.73889 -33.12510 -31.52777 -31.17551 -29.84561 -28.93022 -27.55307 -25.29936 -23.34834 -23.04999 -22.68150 -22.15392 -20.95193 -20.43253 -18.20622 -17.58561 -16.52894 -15.79710 -15.66925 -15.56606 -15.11499 -15.10078 -14.91952 -14.30282 -14.04218 -13.94868 -13.91788 -13.64617 -13.47500 -13.28529 -12.69938 -12.62623 -12.34858 -12.15860 -12.03246 -11.93738 -11.56068 -11.42993 -11.37326 -10.99212 -10.88394 -10.71083 -10.33248 -10.27723 -10.04199 -9.79071 -9.52697 -9.38395 -9.25532 -8.98810 -8.63224 -7.90487 -6.70629 -5.76446 -3.15041 0.50694 0.99086 2.64373 2.81774 3.15519 3.40236 3.45626 3.46862 3.55506 4.32083 4.35556 4.51252 4.51656 4.64310 4.84986 4.95838 5.11827 5.12425 5.17669 5.23685 5.29451 5.33007 5.41863 5.56345 5.58983 5.62677 5.66216 5.80503 5.90249 5.99479 6.02270 6.07804 6.12790 6.16901 6.23355 6.33987 6.42376 6.51176 6.57948 6.81441 6.93160 7.25389 7.32637 7.37225 7.43676 7.76814 7.90410 8.07386 8.41454 9.22749 9.85697 10.44826 11.33941 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.039923 B = 0.001957 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.176913 B =14301.676406 C =14481.385201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.130 4.130 4 C -0.056 4.056 5 C -0.138 4.138 6 C 0.554 3.446 7 O -0.536 6.536 8 N -0.725 5.725 9 C 0.124 3.876 10 C -0.092 4.092 11 C -0.143 4.143 12 C -0.146 4.146 13 C 0.196 3.804 14 N -0.595 5.595 15 C -0.245 4.245 16 H 0.068 0.932 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.142 3.858 24 C -0.091 4.091 25 C -0.082 4.082 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.023 0.977 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.127 0.873 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.117 4.166 -3.611 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.141 4.141 6 C 0.341 3.659 7 O -0.414 6.414 8 N -0.377 5.377 9 C 0.001 3.999 10 C -0.129 4.129 11 C -0.144 4.144 12 C -0.165 4.165 13 C 0.071 3.929 14 N -0.318 5.318 15 C -0.375 4.375 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.016 3.984 24 C -0.130 4.130 25 C -0.101 4.101 26 C -0.147 4.147 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.145 0.855 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -27.510 4.881 -3.461 28.153 hybrid contribution 0.359 -1.236 0.079 1.289 sum -27.151 3.645 -3.383 27.602 Atomic orbital electron populations 1.20870 0.90847 1.03150 1.02685 1.20172 0.96401 0.93192 0.96676 1.21056 0.93846 0.97896 1.01972 1.21300 0.93844 0.97881 0.94467 1.20000 0.92963 0.94532 1.06637 1.18293 0.87050 0.83966 0.76571 1.90790 1.69861 1.31155 1.49597 1.46029 1.08165 1.08264 1.75201 1.21479 0.77573 0.97874 1.02960 1.20913 0.95146 0.94747 1.02142 1.20216 0.92279 1.05909 0.95946 1.23123 0.99901 0.97476 0.96032 1.19728 0.84154 1.00983 0.88060 1.44156 1.34044 1.49038 1.04596 1.19143 1.02590 1.20216 0.95511 0.91434 1.24988 0.97940 0.99624 0.97448 1.70009 1.41335 1.39151 1.05008 0.86323 0.80633 0.82726 0.76818 1.20947 1.21646 1.21139 1.20958 0.91248 0.93782 0.92433 1.20759 0.97910 1.00493 0.93847 1.21317 0.94544 0.97031 0.97228 1.20992 0.93835 0.97885 1.02005 0.90741 0.91223 0.91219 0.85331 0.84549 0.76718 0.91103 0.91081 0.91454 0.91527 0.89079 0.94392 0.89119 0.93590 0.92552 0.95849 0.91953 0.92883 0.85546 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.01 36.01 0.36 -0.15 16 2 C -0.06 -0.44 5.89 -104.53 -0.62 -1.06 16 3 C -0.13 -1.00 9.68 -39.64 -0.38 -1.38 16 4 C -0.06 -0.55 9.60 -39.19 -0.38 -0.93 16 5 C -0.14 -1.46 5.87 -104.97 -0.62 -2.07 16 6 C 0.55 7.28 7.77 -12.33 -0.10 7.18 16 7 O -0.54 -9.14 16.35 5.32 0.09 -9.06 16 8 N -0.72 -8.13 5.51 -61.25 -0.34 -8.47 16 9 C 0.12 1.64 5.66 -4.04 -0.02 1.62 16 10 C -0.09 -1.19 5.32 -27.88 -0.15 -1.34 16 11 C -0.14 -2.48 5.11 -100.99 -0.52 -2.99 16 12 C -0.15 -2.85 9.47 -35.78 -0.34 -3.18 16 13 C 0.20 4.76 5.25 -5.04 -0.03 4.74 16 14 N -0.60 -15.22 3.01 -173.59 -0.52 -15.74 16 15 C -0.25 -6.81 9.71 -15.06 -0.15 -6.96 16 16 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 17 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 18 N -0.91 -26.57 11.07 55.49 0.61 -25.95 16 19 Si 0.90 21.88 29.58 -169.99 -5.03 16.86 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 C 0.14 3.05 6.57 -3.53 -0.02 3.02 16 24 C -0.09 -1.62 5.95 -28.18 -0.17 -1.79 16 25 C -0.08 -0.66 9.54 -39.18 -0.37 -1.03 16 26 C -0.13 -0.89 9.68 -39.64 -0.38 -1.27 16 27 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 28 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 29 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 30 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.14 1.39 7.65 -52.49 -0.40 0.98 16 32 H 0.40 3.25 6.51 -40.82 -0.27 2.98 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 36 H 0.07 0.80 7.78 -51.93 -0.40 0.40 16 37 H 0.09 1.58 7.73 -52.49 -0.41 1.17 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.09 2.44 6.40 -51.93 -0.33 2.10 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 45 H 0.13 0.72 6.41 -52.49 -0.34 0.38 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -32.86 376.82 -10.64 -43.50 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.17 Total: 0.93 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.96 Total: -7.75 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.25 Total: -50.16 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.86 -10.64 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161766394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.036 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds