Wall clock time and date at job start Tue Mar 31 2020 10:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38363 * 119.85893 * 2 1 4 4 C 1.37954 * 120.14659 * 179.97438 * 3 2 1 5 5 C 1.39570 * 119.85160 * 359.97438 * 4 3 2 6 6 C 1.47850 * 120.14184 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00283 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99863 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99627 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46653 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46625 * 180.02562 * 10 9 8 12 12 C 1.29449 * 117.69823 * 95.00277 * 11 10 9 13 13 C 1.50324 * 123.65415 * 181.13891 * 12 11 10 14 14 N 1.47112 * 109.10493 * 348.53287 * 13 12 11 15 15 C 1.36941 * 121.51266 * 223.16067 * 14 13 12 16 16 H 1.07998 * 119.99815 * 156.19092 * 15 14 13 17 17 C 1.38811 * 120.00024 * 336.18756 * 15 14 13 18 18 N 1.31620 * 119.99972 * 344.48080 * 17 15 14 19 19 Si 1.86793 * 120.00126 * 164.48826 * 17 15 14 20 20 H 1.48501 * 109.47376 * 59.99793 * 19 17 15 21 21 H 1.48500 * 109.47635 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47046 * 300.00142 * 19 17 15 23 23 C 1.47344 * 117.11151 * 43.35151 * 14 13 12 24 24 C 1.49977 * 117.69151 * 274.97417 * 11 10 9 25 25 C 1.39578 * 119.71772 * 0.25514 * 5 4 3 26 26 C 1.37961 * 119.84679 * 359.50965 * 25 5 4 27 27 H 1.09009 * 109.46801 * 89.99852 * 1 2 3 28 28 H 1.08995 * 109.47710 * 209.99763 * 1 2 3 29 29 H 1.09001 * 109.47224 * 330.00824 * 1 2 3 30 30 H 1.07998 * 119.91928 * 359.97048 * 3 2 1 31 31 H 1.08001 * 120.07055 * 179.97438 * 4 3 2 32 32 H 0.96995 * 119.99900 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.46857 * 60.00329 * 9 8 6 34 34 H 1.08993 * 109.47459 * 299.99762 * 9 8 6 35 35 H 1.08992 * 109.46993 * 60.00173 * 10 9 8 36 36 H 1.09004 * 109.47004 * 299.99673 * 10 9 8 37 37 H 1.08002 * 118.17287 * 0.85287 * 12 11 10 38 38 H 1.08995 * 109.52453 * 108.64505 * 13 12 11 39 39 H 1.08998 * 109.52251 * 228.83655 * 13 12 11 40 40 H 0.97000 * 119.99856 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.77728 * 178.43237 * 23 14 13 42 42 H 1.08993 * 109.77708 * 57.62166 * 23 14 13 43 43 H 1.08991 * 109.31402 * 281.29457 * 24 11 10 44 44 H 1.08996 * 109.31268 * 40.72531 * 24 11 10 45 45 H 1.08000 * 120.07677 * 179.72740 * 25 5 4 46 46 H 1.08000 * 119.92900 * 180.23090 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5754 1.2069 0.0005 5 6 4.2762 -0.0001 0.0016 6 6 5.7547 -0.0002 0.0016 7 8 6.3625 1.0524 0.0002 8 7 6.4285 -1.1675 0.0021 9 6 7.8935 -1.1675 0.0016 10 6 8.4034 -2.6101 0.0030 11 6 9.9104 -2.6101 0.0031 12 6 10.5121 -2.7089 1.1450 13 6 12.0070 -2.6976 1.3027 14 7 12.6319 -2.8372 -0.0218 15 6 13.7042 -3.6647 -0.2236 16 1 13.9079 -4.0537 -1.2102 17 6 14.5294 -4.0034 0.8400 18 7 14.4802 -3.3102 1.9578 19 14 15.7098 -5.4428 0.6849 20 1 16.6525 -5.1915 -0.4347 21 1 16.4733 -5.5955 1.9494 22 1 14.9424 -6.6855 0.4162 23 6 12.0569 -2.0444 -1.1225 24 6 10.6074 -2.4962 -1.3200 25 6 3.5753 -1.2072 -0.0032 26 6 2.1957 -1.2001 0.0012 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8901 0.5137 30 1 1.6522 2.1332 -0.0005 31 1 4.1118 2.1442 0.0001 32 1 5.9434 -2.0074 0.0029 33 1 8.2571 -0.6531 0.8911 34 1 8.2565 -0.6543 -0.8888 35 1 8.0397 -3.1248 -0.8862 36 1 8.0404 -3.1229 0.8938 37 1 9.9062 -2.8001 2.0344 38 1 12.3180 -1.7578 1.7589 39 1 12.3127 -3.5300 1.9364 40 1 15.0566 -3.5471 2.7012 41 1 12.6247 -2.2167 -2.0369 42 1 12.0815 -0.9853 -0.8662 43 1 10.5966 -3.4657 -1.8178 44 1 10.0847 -1.7691 -1.9414 45 1 4.1117 -2.1445 -0.0069 46 1 1.6520 -2.1333 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161766394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:54 Heat of formation + Delta-G solvation = -3.436072 kcal Electronic energy + Delta-G solvation = -24609.361770 eV Core-core repulsion = 21077.323191 eV Total energy + Delta-G solvation = -3532.038579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27755 -39.71165 -39.28708 -36.78946 -35.20800 -33.90004 -33.08598 -31.94687 -31.48851 -30.29824 -28.34639 -26.94231 -24.78775 -24.13869 -23.64800 -23.15359 -22.47798 -21.31694 -19.47476 -19.01781 -17.71767 -17.19925 -16.98370 -16.56212 -16.24179 -16.00318 -15.83990 -15.60701 -15.48176 -15.18557 -15.00588 -14.59529 -14.51764 -14.29943 -14.24893 -13.87598 -13.38934 -13.22576 -13.01972 -12.89536 -12.82360 -12.76592 -12.57626 -12.54490 -12.37163 -12.20709 -11.94233 -11.90403 -11.67954 -11.29270 -11.03466 -10.67956 -10.24793 -9.96837 -9.64422 -9.49534 -8.75938 -7.88124 -5.30370 -0.16947 0.40860 1.40492 1.46503 1.49231 1.56126 1.80515 2.14121 2.51080 2.86064 3.28403 3.62508 3.68369 3.83116 3.95268 3.99151 4.02096 4.10280 4.11938 4.28191 4.38835 4.44284 4.54480 4.57644 4.67516 4.76418 4.81195 4.85899 4.87562 4.90079 4.96385 5.06022 5.08121 5.16722 5.22924 5.24209 5.29997 5.36464 5.40323 5.41464 5.49770 5.60102 5.60262 5.87226 5.95203 6.27685 6.33220 6.48388 7.12548 7.14537 7.82571 8.38122 9.20412 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.039923 B = 0.001957 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.176913 B =14301.676406 C =14481.385201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.075 4.075 5 C -0.163 4.163 6 C 0.551 3.449 7 O -0.588 6.588 8 N -0.710 5.710 9 C 0.132 3.868 10 C -0.078 4.078 11 C -0.121 4.121 12 C -0.174 4.174 13 C 0.205 3.795 14 N -0.614 5.614 15 C -0.259 4.259 16 H 0.072 0.928 17 C -0.057 4.057 18 N -0.942 5.942 19 Si 0.973 3.027 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.277 1.277 23 C 0.134 3.866 24 C -0.087 4.087 25 C -0.079 4.079 26 C -0.131 4.131 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.120 0.880 32 H 0.416 0.584 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.002 0.998 39 H 0.056 0.944 40 H 0.250 0.750 41 H 0.059 0.941 42 H 0.016 0.984 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.151 0.849 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.499 2.260 -4.961 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.062 4.062 3 C -0.153 4.153 4 C -0.094 4.094 5 C -0.166 4.166 6 C 0.340 3.660 7 O -0.469 6.469 8 N -0.362 5.362 9 C 0.008 3.992 10 C -0.116 4.116 11 C -0.121 4.121 12 C -0.193 4.193 13 C 0.080 3.920 14 N -0.338 5.338 15 C -0.389 4.389 16 H 0.090 0.910 17 C -0.252 4.252 18 N -0.589 5.589 19 Si 0.800 3.200 20 H -0.201 1.201 21 H -0.221 1.221 22 H -0.203 1.203 23 C 0.009 3.991 24 C -0.126 4.126 25 C -0.097 4.097 26 C -0.149 4.149 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.164 0.836 31 H 0.138 0.862 32 H 0.254 0.746 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.168 0.832 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -30.933 2.945 -4.839 31.448 hybrid contribution 1.320 -0.573 0.422 1.500 sum -29.613 2.371 -4.418 30.034 Atomic orbital electron populations 1.20942 0.88740 1.04207 1.03599 1.20577 0.97977 0.92823 0.94780 1.21277 0.92948 0.99383 1.01679 1.21338 0.94993 0.97347 0.95766 1.19893 0.91318 0.95943 1.09439 1.18776 0.88260 0.83523 0.75444 1.90758 1.71057 1.32955 1.52146 1.45808 1.07284 1.08755 1.74339 1.21220 0.78810 0.97647 1.01532 1.20807 0.91461 0.94799 1.04483 1.20568 0.94975 1.01837 0.94769 1.22829 0.96918 1.01385 0.98165 1.19383 0.87576 0.97880 0.87145 1.44447 1.34067 1.49527 1.05808 1.19518 1.03137 1.20467 0.95747 0.91039 1.25813 0.99986 1.02154 0.97247 1.70195 1.42327 1.40705 1.05645 0.85259 0.78530 0.79579 0.76592 1.20062 1.22063 1.20321 1.21158 0.93659 0.93015 0.91278 1.20717 0.95466 1.01629 0.94752 1.21573 0.95246 0.96787 0.96103 1.21381 0.93508 0.99098 1.00871 0.89726 0.89916 0.90517 0.83624 0.86216 0.74589 0.93206 0.92176 0.88670 0.89642 0.86882 0.98025 0.92564 0.94142 0.92209 0.96595 0.91161 0.89686 0.83183 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 71.24 0.71 0.11 16 2 C -0.06 -0.67 5.89 -19.80 -0.12 -0.79 16 3 C -0.14 -1.89 9.68 22.23 0.22 -1.68 16 4 C -0.08 -1.50 9.60 22.52 0.22 -1.28 16 5 C -0.16 -3.30 5.87 -20.09 -0.12 -3.42 16 6 C 0.55 14.33 7.77 86.79 0.67 15.00 16 7 O -0.59 -20.79 16.35 -3.88 -0.06 -20.86 16 8 N -0.71 -14.54 5.51 -465.96 -2.57 -17.11 16 9 C 0.13 3.26 5.66 86.38 0.49 3.75 16 10 C -0.08 -1.76 5.32 29.85 0.16 -1.60 16 11 C -0.12 -3.96 5.11 -15.13 -0.08 -4.04 16 12 C -0.17 -6.77 9.47 27.11 0.26 -6.52 16 13 C 0.21 10.46 5.25 85.40 0.45 10.91 16 14 N -0.61 -32.19 3.01 -703.11 -2.12 -34.31 16 15 C -0.26 -14.63 9.71 84.03 0.82 -13.82 16 16 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 17 C -0.06 -3.29 5.01 84.86 0.43 -2.86 16 18 N -0.94 -57.27 11.07 21.65 0.24 -57.03 16 19 Si 0.97 45.70 29.58 68.60 2.03 47.73 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 C 0.13 5.75 6.57 86.25 0.57 6.32 16 24 C -0.09 -2.92 5.95 29.66 0.18 -2.74 16 25 C -0.08 -1.03 9.54 22.53 0.21 -0.82 16 26 C -0.13 -1.35 9.68 22.23 0.22 -1.13 16 27 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 28 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 29 H 0.08 0.31 8.08 -2.39 -0.02 0.29 16 30 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.12 2.66 7.65 -2.91 -0.02 2.64 16 32 H 0.42 5.36 6.51 -92.71 -0.60 4.76 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.64 8.09 -2.39 -0.02 1.62 16 35 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 36 H 0.09 1.70 7.78 -2.38 -0.02 1.68 16 37 H 0.11 3.85 7.73 -2.91 -0.02 3.82 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.06 3.19 6.40 -2.39 -0.02 3.18 16 40 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 41 H 0.06 2.46 7.96 -2.39 -0.02 2.44 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.08 2.36 8.08 -2.39 -0.02 2.34 16 45 H 0.15 1.12 6.41 -2.91 -0.02 1.10 16 46 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -75.64 376.82 3.16 -72.48 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.37 Total: 13.69 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 5.27 Total: -4.60 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -4.44 Total: -108.44 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.86 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -75.64 3.16 -72.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161766394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.042 kcal (2) G-P(sol) polarization free energy of solvation -75.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds