Wall clock time and date at job start Tue Mar 31 2020 10:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38682 * 119.27437 * 2 1 4 4 C 1.38008 * 119.62577 * 180.02562 * 3 2 1 5 5 C 1.40996 * 118.28282 * 0.02562 * 4 3 2 6 6 C 1.41013 * 120.70959 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00698 * 208.33470 * 6 5 4 8 8 C 1.39954 * 119.99795 * 28.33101 * 6 5 4 9 9 N 1.30863 * 119.99723 * 10.72668 * 8 6 5 10 10 Si 1.86798 * 119.99934 * 190.73164 * 8 6 5 11 11 H 1.48504 * 109.47185 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47614 * 119.99904 * 10 8 6 13 13 H 1.48510 * 109.46846 * 239.99873 * 10 8 6 14 14 C 1.41713 * 118.58794 * 0.02562 * 5 4 3 15 15 N 1.38093 * 119.90650 * 179.97438 * 14 5 4 16 16 C 1.46901 * 110.99709 * 93.18279 * 15 14 5 17 17 C 1.53260 * 109.54416 * 189.03761 * 16 15 14 18 18 C 1.51450 * 108.41943 * 306.57895 * 17 16 15 19 19 O 1.20756 * 121.25233 * 229.35047 * 18 17 16 20 20 C 1.51707 * 117.49468 * 49.31951 * 18 17 16 21 21 H 1.08992 * 110.13085 * 190.00883 * 20 18 17 22 22 C 1.53067 * 109.13567 * 69.01170 * 20 18 17 23 23 C 1.52926 * 109.71597 * 183.03052 * 22 20 18 24 24 C 1.53042 * 109.33528 * 60.48226 * 23 22 20 25 25 C 1.51349 * 109.47012 * 299.88956 * 24 23 22 26 26 C 1.46637 * 111.00599 * 217.68450 * 15 14 5 27 27 H 1.09004 * 109.20628 * 289.57944 * 26 15 14 28 28 N 1.31965 * 119.27707 * 179.73854 * 2 1 3 29 29 H 1.08999 * 109.47221 * 89.99768 * 1 2 3 30 30 H 1.09003 * 109.46664 * 209.99605 * 1 2 3 31 31 H 1.09000 * 109.47256 * 329.99134 * 1 2 3 32 32 H 1.08001 * 120.18489 * 0.03200 * 3 2 1 33 33 H 1.08000 * 120.85515 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99593 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.45383 * 309.06195 * 16 15 14 36 36 H 1.09000 * 109.45490 * 69.01170 * 16 15 14 37 37 H 1.08998 * 109.67426 * 186.84311 * 17 16 15 38 38 H 1.08996 * 109.70210 * 66.32697 * 17 16 15 39 39 H 1.08996 * 109.43280 * 303.10500 * 22 20 18 40 40 H 1.08997 * 109.43076 * 62.95225 * 22 20 18 41 41 H 1.08998 * 109.49109 * 180.44345 * 23 22 20 42 42 H 1.09002 * 109.48989 * 300.52286 * 23 22 20 43 43 H 1.08996 * 109.50733 * 59.39730 * 24 23 22 44 44 H 1.08995 * 109.50802 * 179.49406 * 24 23 22 45 45 H 1.09003 * 108.28451 * 299.19643 * 25 24 23 46 46 H 1.09000 * 109.65748 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 -0.0005 5 6 4.2409 -0.0193 -0.0016 6 6 5.6501 -0.0704 -0.0017 7 1 6.1601 -0.9122 -0.4463 8 6 6.3880 0.9699 0.5744 9 7 5.7834 1.8805 1.2940 10 14 8.2359 1.0587 0.3161 11 1 8.6730 -0.0814 -0.5291 12 1 8.5808 2.3361 -0.3582 13 1 8.9233 0.9917 1.6308 14 6 3.4737 -1.2108 -0.0027 15 7 4.1074 -2.4378 -0.0043 16 6 4.2818 -2.9419 1.3644 17 6 5.1801 -4.1835 1.3429 18 6 4.6007 -5.1763 0.3568 19 8 4.4343 -6.3339 0.6577 20 6 4.2366 -4.6616 -1.0231 21 1 3.6740 -5.4186 -1.5694 22 6 5.5186 -4.3090 -1.7815 23 6 5.1644 -3.7179 -3.1467 24 6 4.3360 -2.4463 -2.9488 25 6 3.0645 -2.7839 -2.2005 26 6 3.3858 -3.4010 -0.8419 27 1 2.4480 -3.6682 -0.3546 28 7 2.1524 -1.1511 0.0053 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6364 2.1399 0.0005 33 1 4.1134 2.1487 -0.0010 34 1 6.2948 2.6017 1.6930 35 1 4.7441 -2.1699 1.9796 36 1 3.3095 -3.2043 1.7813 37 1 5.2129 -4.6300 2.3367 38 1 6.1868 -3.9034 1.0330 39 1 6.0902 -3.5795 -1.2078 40 1 6.1170 -5.2093 -1.9204 41 1 6.0797 -3.4754 -3.6866 42 1 4.5858 -4.4436 -3.7182 43 1 4.9100 -1.7248 -2.3674 44 1 4.0895 -2.0176 -3.9201 45 1 2.4958 -3.4973 -2.7971 46 1 2.4722 -1.8801 -2.0575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163791791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:00 Heat of formation + Delta-G solvation = -15.399181 kcal Electronic energy + Delta-G solvation = -28188.297159 eV Core-core repulsion = 24655.739821 eV Total energy + Delta-G solvation = -3532.557338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56659 -38.74381 -37.42132 -35.19371 -34.25139 -32.33096 -31.00133 -30.07929 -29.93887 -28.56412 -27.62965 -24.24125 -23.15142 -22.84904 -22.34074 -20.85820 -20.52302 -19.40545 -17.94855 -17.33605 -16.10292 -15.76591 -15.58510 -15.03701 -14.92518 -14.66762 -14.31373 -14.01913 -13.91925 -13.49000 -13.09186 -12.83139 -12.74059 -12.60507 -12.11262 -12.03640 -11.92617 -11.76863 -11.57575 -11.44716 -11.33742 -11.23944 -11.06423 -10.96709 -10.86294 -10.75017 -10.54410 -10.21570 -10.15772 -9.81713 -9.63958 -9.39995 -8.95169 -8.48319 -8.12372 -7.82970 -7.22535 -6.80670 -4.45164 2.18887 2.51473 2.83123 3.01947 3.06804 3.11579 3.84181 4.28789 4.46409 4.56024 4.98523 5.06948 5.12856 5.38191 5.48094 5.49218 5.54298 5.64230 5.71518 5.73408 5.81176 5.87838 5.96091 6.03467 6.05282 6.11233 6.19486 6.27686 6.31209 6.34170 6.38666 6.42024 6.48025 6.56324 6.58770 6.67331 6.80966 6.85915 6.86931 7.01883 7.05571 7.11874 7.52709 7.64389 7.71988 7.75794 7.96697 8.22581 8.55802 8.66923 8.85444 9.52484 10.06063 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.007102 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.790859 B = 3941.617312 C = 5187.754415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.001 4.001 3 C -0.151 4.151 4 C -0.128 4.128 5 C 0.089 3.911 6 C -0.420 4.420 7 H 0.093 0.907 8 C 0.068 3.932 9 N -0.798 5.798 10 Si 0.909 3.091 11 H -0.257 1.257 12 H -0.274 1.274 13 H -0.275 1.275 14 C 0.171 3.829 15 N -0.444 5.444 16 C 0.073 3.927 17 C -0.164 4.164 18 C 0.370 3.630 19 O -0.472 6.472 20 C -0.125 4.125 21 H 0.089 0.911 22 C -0.099 4.099 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.104 4.104 26 C 0.109 3.891 27 H 0.046 0.954 28 N -0.489 5.489 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.281 0.719 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -4.448 -3.902 5.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.141 4.141 3 C -0.171 4.171 4 C -0.154 4.154 5 C 0.083 3.917 6 C -0.450 4.450 7 H 0.111 0.889 8 C -0.149 4.149 9 N -0.423 5.423 10 Si 0.734 3.266 11 H -0.181 1.181 12 H -0.199 1.199 13 H -0.201 1.201 14 C -0.061 4.061 15 N -0.166 5.166 16 C -0.054 4.054 17 C -0.202 4.202 18 C 0.247 3.753 19 O -0.346 6.346 20 C -0.145 4.145 21 H 0.107 0.893 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.155 4.155 25 C -0.142 4.142 26 C 0.001 3.999 27 H 0.064 0.936 28 N -0.202 5.202 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.002 -5.560 -3.777 6.722 hybrid contribution 0.488 0.979 0.385 1.159 sum 0.486 -4.582 -3.392 5.721 Atomic orbital electron populations 1.20282 0.91918 1.00711 1.00248 1.20004 0.94403 0.88295 1.11402 1.21423 0.95448 0.96881 1.03377 1.21672 0.92231 0.98921 1.02570 1.18021 0.94107 0.89590 0.90013 1.19547 0.90794 1.04112 1.30511 0.88936 1.26026 1.01357 0.94407 0.93103 1.69796 1.38341 1.10990 1.23195 0.86224 0.81915 0.79401 0.79079 1.18089 1.19911 1.20065 1.19162 0.86469 0.89418 1.11025 1.59084 1.47710 1.00614 1.09160 1.21972 0.97441 0.95224 0.90806 1.22401 1.02150 0.96307 0.99375 1.25163 0.72022 0.87839 0.90316 1.90344 1.43642 1.20521 1.80105 1.22120 0.99148 0.98441 0.94765 0.89300 1.21363 0.95185 1.00609 0.96531 1.21428 0.99664 0.97519 0.96041 1.21197 0.97011 0.97802 0.99466 1.21144 0.97853 1.01267 0.93922 1.21169 0.93792 0.90080 0.94904 0.93644 1.66792 1.10801 1.30118 1.12455 0.93351 0.92902 0.93018 0.88588 0.85378 0.90842 0.89018 0.94940 0.89603 0.87428 0.89476 0.92917 0.92185 0.92975 0.89599 0.93193 0.93217 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.15 36.01 0.37 -0.91 16 2 C 0.00 -0.02 6.79 -82.37 -0.56 -0.58 16 3 C -0.15 -3.27 9.69 -39.50 -0.38 -3.66 16 4 C -0.13 -3.01 8.76 -38.62 -0.34 -3.35 16 5 C 0.09 2.09 5.58 -106.47 -0.59 1.49 16 6 C -0.42 -9.67 8.68 -37.89 -0.33 -10.00 16 7 H 0.09 2.08 7.64 -52.49 -0.40 1.68 16 8 C 0.07 1.54 5.28 -17.32 -0.09 1.45 16 9 N -0.80 -18.75 10.85 55.55 0.60 -18.14 16 10 Si 0.91 17.20 29.57 -169.99 -5.03 12.17 16 11 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 12 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 13 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 14 C 0.17 3.72 4.03 -155.02 -0.62 3.09 16 15 N -0.44 -8.37 2.63 -165.27 -0.43 -8.81 16 16 C 0.07 1.30 5.43 -3.69 -0.02 1.28 16 17 C -0.16 -2.49 6.01 -27.38 -0.16 -2.65 16 18 C 0.37 6.01 6.13 -28.17 -0.17 5.84 16 19 O -0.47 -8.74 17.91 6.00 0.11 -8.64 16 20 C -0.12 -1.92 2.64 -91.16 -0.24 -2.16 16 21 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 22 C -0.10 -1.40 4.97 -26.73 -0.13 -1.53 16 23 C -0.11 -1.47 5.93 -26.75 -0.16 -1.63 16 24 C -0.12 -1.86 5.76 -27.54 -0.16 -2.02 16 25 C -0.10 -1.76 4.83 -27.75 -0.13 -1.90 16 26 C 0.11 1.89 1.51 -67.96 -0.10 1.79 16 27 H 0.05 0.87 7.88 -51.93 -0.41 0.46 16 28 N -0.49 -10.72 7.89 -8.11 -0.06 -10.79 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.13 3.13 6.29 -52.49 -0.33 2.80 16 34 H 0.28 6.08 8.30 -40.82 -0.34 5.74 16 35 H 0.09 1.76 8.07 -51.93 -0.42 1.34 16 36 H 0.03 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.11 1.52 7.73 -51.93 -0.40 1.12 16 39 H 0.09 1.33 7.08 -51.93 -0.37 0.96 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.60 7.49 -51.93 -0.39 1.21 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 1.56 5.95 -51.93 -0.31 1.26 16 LS Contribution 356.26 15.07 5.37 5.37 Total: -1.00 -25.26 356.26 -10.51 -35.77 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.23 Total: 8.50 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.84 Total: -15.44 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.10 Total: -37.74 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.11 Total: -8.64 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -25.26 -10.51 -35.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163791791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.372 kcal (2) G-P(sol) polarization free energy of solvation -25.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds