Wall clock time and date at job start Tue Mar 31 2020 10:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38682 * 119.27437 * 2 1 4 4 C 1.38008 * 119.62577 * 180.02562 * 3 2 1 5 5 C 1.40996 * 118.28282 * 0.02562 * 4 3 2 6 6 C 1.41013 * 120.70959 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00698 * 208.33470 * 6 5 4 8 8 C 1.39954 * 119.99795 * 28.33101 * 6 5 4 9 9 N 1.30863 * 119.99723 * 10.72668 * 8 6 5 10 10 Si 1.86798 * 119.99934 * 190.73164 * 8 6 5 11 11 H 1.48504 * 109.47185 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47614 * 119.99904 * 10 8 6 13 13 H 1.48510 * 109.46846 * 239.99873 * 10 8 6 14 14 C 1.41713 * 118.58794 * 0.02562 * 5 4 3 15 15 N 1.38093 * 119.90650 * 179.97438 * 14 5 4 16 16 C 1.46901 * 110.99709 * 93.18279 * 15 14 5 17 17 C 1.53260 * 109.54416 * 189.03761 * 16 15 14 18 18 C 1.51450 * 108.41943 * 306.57895 * 17 16 15 19 19 O 1.20756 * 121.25233 * 229.35047 * 18 17 16 20 20 C 1.51707 * 117.49468 * 49.31951 * 18 17 16 21 21 H 1.08992 * 110.13085 * 190.00883 * 20 18 17 22 22 C 1.53067 * 109.13567 * 69.01170 * 20 18 17 23 23 C 1.52926 * 109.71597 * 183.03052 * 22 20 18 24 24 C 1.53042 * 109.33528 * 60.48226 * 23 22 20 25 25 C 1.51349 * 109.47012 * 299.88956 * 24 23 22 26 26 C 1.46637 * 111.00599 * 217.68450 * 15 14 5 27 27 H 1.09004 * 109.20628 * 289.57944 * 26 15 14 28 28 N 1.31965 * 119.27707 * 179.73854 * 2 1 3 29 29 H 1.08999 * 109.47221 * 89.99768 * 1 2 3 30 30 H 1.09003 * 109.46664 * 209.99605 * 1 2 3 31 31 H 1.09000 * 109.47256 * 329.99134 * 1 2 3 32 32 H 1.08001 * 120.18489 * 0.03200 * 3 2 1 33 33 H 1.08000 * 120.85515 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99593 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.45383 * 309.06195 * 16 15 14 36 36 H 1.09000 * 109.45490 * 69.01170 * 16 15 14 37 37 H 1.08998 * 109.67426 * 186.84311 * 17 16 15 38 38 H 1.08996 * 109.70210 * 66.32697 * 17 16 15 39 39 H 1.08996 * 109.43280 * 303.10500 * 22 20 18 40 40 H 1.08997 * 109.43076 * 62.95225 * 22 20 18 41 41 H 1.08998 * 109.49109 * 180.44345 * 23 22 20 42 42 H 1.09002 * 109.48989 * 300.52286 * 23 22 20 43 43 H 1.08996 * 109.50733 * 59.39730 * 24 23 22 44 44 H 1.08995 * 109.50802 * 179.49406 * 24 23 22 45 45 H 1.09003 * 108.28451 * 299.19643 * 25 24 23 46 46 H 1.09000 * 109.65748 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 -0.0005 5 6 4.2409 -0.0193 -0.0016 6 6 5.6501 -0.0704 -0.0017 7 1 6.1601 -0.9122 -0.4463 8 6 6.3880 0.9699 0.5744 9 7 5.7834 1.8805 1.2940 10 14 8.2359 1.0587 0.3161 11 1 8.6730 -0.0814 -0.5291 12 1 8.5808 2.3361 -0.3582 13 1 8.9233 0.9917 1.6308 14 6 3.4737 -1.2108 -0.0027 15 7 4.1074 -2.4378 -0.0043 16 6 4.2818 -2.9419 1.3644 17 6 5.1801 -4.1835 1.3429 18 6 4.6007 -5.1763 0.3568 19 8 4.4343 -6.3339 0.6577 20 6 4.2366 -4.6616 -1.0231 21 1 3.6740 -5.4186 -1.5694 22 6 5.5186 -4.3090 -1.7815 23 6 5.1644 -3.7179 -3.1467 24 6 4.3360 -2.4463 -2.9488 25 6 3.0645 -2.7839 -2.2005 26 6 3.3858 -3.4010 -0.8419 27 1 2.4480 -3.6682 -0.3546 28 7 2.1524 -1.1511 0.0053 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6364 2.1399 0.0005 33 1 4.1134 2.1487 -0.0010 34 1 6.2948 2.6017 1.6930 35 1 4.7441 -2.1699 1.9796 36 1 3.3095 -3.2043 1.7813 37 1 5.2129 -4.6300 2.3367 38 1 6.1868 -3.9034 1.0330 39 1 6.0902 -3.5795 -1.2078 40 1 6.1170 -5.2093 -1.9204 41 1 6.0797 -3.4754 -3.6866 42 1 4.5858 -4.4436 -3.7182 43 1 4.9100 -1.7248 -2.3674 44 1 4.0895 -2.0176 -3.9201 45 1 2.4958 -3.4973 -2.7971 46 1 2.4722 -1.8801 -2.0575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163791791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:59 Heat of formation + Delta-G solvation = -25.517790 kcal Electronic energy + Delta-G solvation = -28188.735935 eV Core-core repulsion = 24655.739821 eV Total energy + Delta-G solvation = -3532.996114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.99181 -40.29656 -38.86291 -36.58937 -35.95641 -33.76302 -32.67239 -31.45294 -31.35787 -29.98096 -29.26249 -25.87168 -24.57015 -24.20767 -23.73776 -22.46078 -22.07690 -20.75497 -19.31613 -19.07148 -17.55821 -17.35252 -17.00155 -16.48047 -16.37873 -16.10798 -15.74538 -15.52619 -15.42937 -14.90277 -14.52322 -14.29564 -14.11013 -13.95994 -13.73900 -13.41762 -13.30293 -13.23901 -13.03512 -12.95556 -12.78687 -12.60013 -12.56982 -12.48442 -12.29333 -12.09808 -11.99144 -11.63310 -11.47751 -11.27889 -11.10062 -10.94616 -10.28783 -10.13592 -9.87467 -9.47212 -8.89992 -8.49283 -6.21686 0.82127 0.86817 1.10455 1.46091 1.55314 1.59061 2.25759 2.80534 2.92368 3.10474 3.64894 3.72304 3.81042 3.90419 4.04466 4.16498 4.23808 4.29715 4.35029 4.45474 4.49767 4.54623 4.61127 4.67444 4.69508 4.79266 4.86050 4.88820 4.95732 4.96631 5.02094 5.09705 5.11690 5.15509 5.21292 5.32783 5.35691 5.38264 5.41467 5.42622 5.53390 5.72344 5.83750 5.92076 6.19256 6.27697 6.39431 6.50568 6.82037 6.93179 7.14420 7.80337 8.38552 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.007102 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.790859 B = 3941.617312 C = 5187.754415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.011 4.011 3 C -0.158 4.158 4 C -0.151 4.151 5 C 0.063 3.937 6 C -0.434 4.434 7 H 0.092 0.908 8 C 0.032 3.968 9 N -0.830 5.830 10 Si 0.974 3.026 11 H -0.251 1.251 12 H -0.273 1.273 13 H -0.273 1.273 14 C 0.178 3.822 15 N -0.443 5.443 16 C 0.077 3.923 17 C -0.155 4.155 18 C 0.375 3.625 19 O -0.492 6.492 20 C -0.118 4.118 21 H 0.102 0.898 22 C -0.096 4.096 23 C -0.102 4.102 24 C -0.112 4.112 25 C -0.100 4.100 26 C 0.112 3.888 27 H 0.025 0.975 28 N -0.501 5.501 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.285 0.715 35 H 0.073 0.927 36 H 0.020 0.980 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 -5.886 -4.914 7.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.150 4.150 3 C -0.178 4.178 4 C -0.178 4.178 5 C 0.057 3.943 6 C -0.464 4.464 7 H 0.110 0.890 8 C -0.182 4.182 9 N -0.457 5.457 10 Si 0.796 3.204 11 H -0.174 1.174 12 H -0.198 1.198 13 H -0.198 1.198 14 C -0.054 4.054 15 N -0.164 5.164 16 C -0.050 4.050 17 C -0.193 4.193 18 C 0.253 3.747 19 O -0.368 6.368 20 C -0.138 4.138 21 H 0.120 0.880 22 C -0.134 4.134 23 C -0.139 4.139 24 C -0.150 4.150 25 C -0.138 4.138 26 C 0.004 3.996 27 H 0.043 0.957 28 N -0.214 5.214 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.038 0.962 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.597 -6.998 -4.793 8.503 hybrid contribution 0.166 1.434 0.702 1.605 sum 0.763 -5.564 -4.091 6.948 Atomic orbital electron populations 1.20306 0.88950 1.01744 1.01549 1.20700 0.96520 0.87920 1.09865 1.21664 0.94961 0.98171 1.03038 1.21672 0.93211 0.98582 1.04338 1.18312 0.94872 0.90238 0.90865 1.19634 0.90848 1.04712 1.31238 0.88961 1.26738 1.05242 0.93788 0.92420 1.69862 1.39954 1.11722 1.24133 0.85247 0.76865 0.79370 0.78912 1.17379 1.19835 1.19848 1.19368 0.86501 0.90214 1.09367 1.59097 1.47441 1.00114 1.09776 1.21884 0.97281 0.95882 0.89950 1.22352 1.02022 0.94600 1.00297 1.25300 0.71226 0.87488 0.90690 1.90348 1.44578 1.21385 1.80476 1.22100 0.99646 0.97295 0.94719 0.88001 1.21364 0.94377 1.01226 0.96413 1.21396 1.00125 0.96379 0.96047 1.21121 0.96331 0.98528 0.99026 1.21083 0.98293 1.00289 0.94149 1.21167 0.93239 0.90601 0.94587 0.95701 1.66945 1.10902 1.30518 1.12988 0.91806 0.92780 0.91044 0.86533 0.86936 0.90447 0.90815 0.96187 0.88006 0.85952 0.90817 0.90722 0.90682 0.91059 0.92798 0.92392 0.91222 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 10.15 71.24 0.72 -1.53 16 2 C -0.01 -0.45 6.79 42.65 0.29 -0.16 16 3 C -0.16 -6.97 9.69 22.32 0.22 -6.75 16 4 C -0.15 -7.43 8.76 22.89 0.20 -7.23 16 5 C 0.06 3.07 5.58 -21.06 -0.12 2.95 16 6 C -0.43 -20.56 8.68 23.37 0.20 -20.36 16 7 H 0.09 4.24 7.64 -2.91 -0.02 4.21 16 8 C 0.03 1.47 5.28 85.25 0.45 1.92 16 9 N -0.83 -40.19 10.85 21.83 0.24 -39.95 16 10 Si 0.97 35.36 29.57 68.60 2.03 37.39 16 11 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 12 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 13 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 14 C 0.18 7.93 4.03 134.05 0.54 8.47 16 15 N -0.44 -16.84 2.63 -676.78 -1.78 -18.62 16 16 C 0.08 2.79 5.43 86.39 0.47 3.26 16 17 C -0.15 -4.49 6.01 30.17 0.18 -4.31 16 18 C 0.37 11.52 6.13 29.66 0.18 11.71 16 19 O -0.49 -17.29 17.91 -1.44 -0.03 -17.32 16 20 C -0.12 -3.38 2.64 -11.14 -0.03 -3.41 16 21 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 22 C -0.10 -2.45 4.97 30.59 0.15 -2.30 16 23 C -0.10 -2.46 5.93 30.58 0.18 -2.28 16 24 C -0.11 -3.44 5.76 30.07 0.17 -3.27 16 25 C -0.10 -3.33 4.83 29.93 0.14 -3.18 16 26 C 0.11 3.84 1.51 44.90 0.07 3.91 16 27 H 0.02 0.95 7.88 -2.38 -0.02 0.93 16 28 N -0.50 -22.30 7.89 -179.56 -1.42 -23.72 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 32 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 33 H 0.11 5.78 6.29 -2.91 -0.02 5.76 16 34 H 0.28 12.66 8.30 -92.71 -0.77 11.90 16 35 H 0.07 2.91 8.07 -2.39 -0.02 2.90 16 36 H 0.02 0.76 8.09 -2.39 -0.02 0.74 16 37 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.12 3.24 7.73 -2.39 -0.02 3.22 16 39 H 0.07 2.11 7.08 -2.39 -0.02 2.09 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 2.01 7.49 -2.39 -0.02 1.99 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.05 1.89 5.95 -2.39 -0.01 1.88 16 Total: -1.00 -55.57 356.26 4.04 -51.53 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.97 Total: 33.26 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.03 Total: -22.57 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -2.96 Total: -82.29 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.03 Total: -17.32 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -55.57 4.04 -51.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163791791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.013 kcal (2) G-P(sol) polarization free energy of solvation -55.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds