Wall clock time and date at job start Tue Mar 31 2020 10:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38684 * 119.27785 * 2 1 4 4 C 1.38001 * 119.62708 * 180.02562 * 3 2 1 5 5 C 1.41003 * 118.28577 * 359.74803 * 4 3 2 6 6 C 1.41013 * 120.71254 * 180.24605 * 5 4 3 7 7 H 1.07998 * 120.00604 * 155.36723 * 6 5 4 8 8 C 1.39949 * 119.99632 * 335.37237 * 6 5 4 9 9 N 1.30868 * 120.00227 * 343.87732 * 8 6 5 10 10 Si 1.86799 * 119.99934 * 163.87004 * 8 6 5 11 11 H 1.48506 * 109.47439 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46825 * 120.00068 * 10 8 6 13 13 H 1.48498 * 109.47610 * 240.00165 * 10 8 6 14 14 C 1.41708 * 118.57979 * 0.48814 * 5 4 3 15 15 N 1.38096 * 119.89880 * 179.77943 * 14 5 4 16 16 C 1.46999 * 111.00287 * 116.26455 * 15 14 5 17 17 C 1.53192 * 109.84595 * 188.42369 * 16 15 14 18 18 C 1.51630 * 108.62855 * 307.24274 * 17 16 15 19 19 O 1.20758 * 121.42570 * 228.86835 * 18 17 16 20 20 C 1.51188 * 117.15563 * 48.84951 * 18 17 16 21 21 H 1.09006 * 109.63747 * 69.06893 * 20 18 17 22 22 C 1.52763 * 110.53752 * 190.04795 * 20 18 17 23 23 C 1.53170 * 108.94745 * 179.57302 * 22 20 18 24 24 C 1.52905 * 109.92064 * 300.45898 * 23 22 20 25 25 C 1.53171 * 109.92550 * 58.87929 * 24 23 22 26 26 C 1.46318 * 110.86869 * 240.38365 * 15 14 5 27 27 H 1.09004 * 108.82914 * 289.10890 * 26 15 14 28 28 N 1.31966 * 119.27825 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47506 * 269.98629 * 1 2 3 30 30 H 1.09000 * 109.46426 * 29.98848 * 1 2 3 31 31 H 1.08997 * 109.46550 * 149.97748 * 1 2 3 32 32 H 1.08008 * 120.18208 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.85990 * 179.97438 * 4 3 2 34 34 H 0.97005 * 120.00428 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.39041 * 68.32825 * 16 15 14 36 36 H 1.08999 * 109.39327 * 308.51802 * 16 15 14 37 37 H 1.08997 * 109.61242 * 66.98901 * 17 16 15 38 38 H 1.08997 * 109.60768 * 187.32917 * 17 16 15 39 39 H 1.09000 * 109.55740 * 299.41375 * 22 20 18 40 40 H 1.09006 * 109.55567 * 59.72963 * 22 20 18 41 41 H 1.08999 * 109.39758 * 60.59594 * 23 22 20 42 42 H 1.08997 * 109.39850 * 180.41368 * 23 22 20 43 43 H 1.08999 * 109.39456 * 179.02562 * 24 23 22 44 44 H 1.09003 * 109.39361 * 298.74295 * 24 23 22 45 45 H 1.08999 * 109.55828 * 60.38173 * 25 24 23 46 46 H 1.09001 * 109.55373 * 180.58347 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2097 0.0000 4 6 3.5653 1.2181 -0.0005 5 6 4.2410 -0.0195 0.0044 6 6 5.6502 -0.0706 0.0093 7 1 6.1578 -0.9389 0.4027 8 6 6.3910 1.0041 -0.4955 9 7 5.8101 1.9030 -1.2485 10 14 8.2092 1.1554 -0.0944 11 1 8.6221 0.0192 0.7681 12 1 8.9972 1.1327 -1.3529 13 1 8.4538 2.4341 0.6199 14 6 3.4737 -1.2108 -0.0010 15 7 4.1074 -2.4378 -0.0009 16 6 3.8049 -3.1870 1.2271 17 6 4.6790 -4.4431 1.2986 18 6 4.5207 -5.2177 0.0047 19 8 4.2944 -6.4038 0.0047 20 6 4.6579 -4.4414 -1.2854 21 1 5.6932 -4.1256 -1.4146 22 6 4.2306 -5.2993 -2.4750 23 6 4.3735 -4.4760 -3.7587 24 6 3.4960 -3.2265 -3.6766 25 6 3.9037 -2.3809 -2.4663 26 6 3.7509 -3.2086 -1.1924 27 1 2.7131 -3.5305 -1.1057 28 7 2.1524 -1.1511 -0.0005 29 1 -0.3634 -0.0002 1.0276 30 1 -0.3632 0.8901 -0.5137 31 1 -0.3632 -0.8898 -0.5142 32 1 1.6364 2.1399 -0.0004 33 1 4.1136 2.1486 -0.0010 34 1 6.3237 2.6477 -1.5988 35 1 2.7541 -3.4768 1.2246 36 1 4.0046 -2.5571 2.0939 37 1 5.7225 -4.1558 1.4278 38 1 4.3631 -5.0611 2.1390 39 1 4.8666 -6.1824 -2.5352 40 1 3.1914 -5.6039 -2.3506 41 1 5.4148 -4.1794 -3.8845 42 1 4.0633 -5.0791 -4.6120 43 1 3.6174 -2.6386 -4.5864 44 1 2.4521 -3.5233 -3.5757 45 1 4.9448 -2.0749 -2.5689 46 1 3.2679 -1.4975 -2.4076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163791793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:05 Heat of formation + Delta-G solvation = -21.074248 kcal Electronic energy + Delta-G solvation = -27791.377003 eV Core-core repulsion = 24258.573575 eV Total energy + Delta-G solvation = -3532.803427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44010 -38.72572 -37.31848 -35.63646 -34.27167 -32.05504 -30.89289 -30.23290 -30.01167 -28.51478 -27.68882 -24.24309 -23.33919 -22.76723 -22.22697 -20.78175 -19.95396 -19.52071 -18.72358 -17.33198 -16.18033 -15.69571 -15.60209 -15.01990 -14.80988 -14.64475 -14.47709 -13.96370 -13.93613 -13.34529 -13.23897 -13.04334 -12.83477 -12.57712 -12.19073 -12.06480 -11.81225 -11.73308 -11.53142 -11.50937 -11.33474 -11.13384 -11.00747 -10.96178 -10.87440 -10.82797 -10.54461 -10.41681 -10.21130 -9.90559 -9.71329 -9.38083 -8.97589 -8.46271 -8.17901 -7.58609 -7.43761 -6.87732 -4.43805 2.21084 2.51604 2.83609 3.01240 3.06365 3.13405 3.83038 4.27858 4.41290 4.51307 4.96432 5.02175 5.20231 5.34768 5.41567 5.45166 5.51157 5.52853 5.69998 5.71564 5.72934 5.81489 5.90556 5.98788 6.05499 6.09963 6.19595 6.25008 6.27615 6.32017 6.36072 6.37283 6.40406 6.45735 6.47917 6.49736 6.78669 6.83564 6.90965 6.94924 7.06093 7.11844 7.53118 7.67463 7.74425 7.75367 7.96810 8.24142 8.54952 8.65706 8.87520 9.55165 10.01251 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.006313 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.905764 B = 4434.462739 C = 5405.168427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.009 4.009 3 C -0.144 4.144 4 C -0.136 4.136 5 C 0.094 3.906 6 C -0.412 4.412 7 H 0.093 0.907 8 C 0.070 3.930 9 N -0.788 5.788 10 Si 0.909 3.091 11 H -0.257 1.257 12 H -0.274 1.274 13 H -0.273 1.273 14 C 0.158 3.842 15 N -0.450 5.450 16 C 0.071 3.929 17 C -0.166 4.166 18 C 0.370 3.630 19 O -0.468 6.468 20 C -0.132 4.132 21 H 0.112 0.888 22 C -0.102 4.102 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.102 4.102 26 C 0.116 3.884 27 H 0.041 0.959 28 N -0.486 5.486 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.282 0.718 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -5.134 -1.080 5.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.150 4.150 3 C -0.164 4.164 4 C -0.163 4.163 5 C 0.088 3.912 6 C -0.441 4.441 7 H 0.111 0.889 8 C -0.148 4.148 9 N -0.413 5.413 10 Si 0.733 3.267 11 H -0.181 1.181 12 H -0.200 1.200 13 H -0.198 1.198 14 C -0.074 4.074 15 N -0.171 5.171 16 C -0.057 4.057 17 C -0.204 4.204 18 C 0.247 3.753 19 O -0.342 6.342 20 C -0.151 4.151 21 H 0.130 0.870 22 C -0.140 4.140 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.140 4.140 26 C 0.007 3.993 27 H 0.059 0.941 28 N -0.198 5.198 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.412 -6.225 -1.224 6.357 hybrid contribution 0.492 1.073 0.156 1.191 sum 0.080 -5.152 -1.069 5.262 Atomic orbital electron populations 1.20265 0.91971 1.00647 1.00157 1.19961 0.94370 0.88261 1.12390 1.21423 0.95389 0.96889 1.02745 1.21663 0.92321 0.98831 1.03452 1.18062 0.94090 0.89693 0.89367 1.19573 0.90860 1.01486 1.32225 0.88915 1.26064 1.01399 0.94597 0.92783 1.69823 1.38669 1.10418 1.22358 0.86235 0.81694 0.79421 0.79347 1.18086 1.19963 1.19809 1.19085 0.86204 0.89343 1.12730 1.59243 1.56076 1.01413 1.00377 1.21965 0.96642 0.92924 0.94194 1.22429 1.03573 0.97754 0.96627 1.24995 0.69245 0.87979 0.93128 1.90332 1.36243 1.17540 1.90126 1.21999 1.03131 0.96352 0.93621 0.87044 1.21354 1.01754 0.97451 0.93414 1.21541 1.00482 0.96530 0.96856 1.21533 0.99281 0.96173 0.98468 1.21391 1.03081 0.97762 0.91724 1.21223 0.95592 0.91144 0.91322 0.94091 1.66737 1.11145 1.30314 1.11570 0.93469 0.93067 0.92952 0.88579 0.85430 0.90719 0.94271 0.90113 0.87679 0.89630 0.91531 0.91950 0.91811 0.92288 0.92066 0.92531 0.90878 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.15 36.01 0.37 -0.91 16 2 C -0.01 -0.20 6.79 -82.37 -0.56 -0.76 16 3 C -0.14 -3.18 9.69 -39.50 -0.38 -3.56 16 4 C -0.14 -3.27 8.79 -38.62 -0.34 -3.61 16 5 C 0.09 2.27 5.60 -106.47 -0.60 1.67 16 6 C -0.41 -9.78 8.71 -37.89 -0.33 -10.11 16 7 H 0.09 2.16 7.60 -52.49 -0.40 1.77 16 8 C 0.07 1.59 5.20 -17.32 -0.09 1.50 16 9 N -0.79 -18.56 10.90 55.55 0.61 -17.95 16 10 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 11 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 13 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 14 C 0.16 3.55 3.61 -155.03 -0.56 2.99 16 15 N -0.45 -8.84 3.69 -165.34 -0.61 -9.45 16 16 C 0.07 1.24 5.27 -3.67 -0.02 1.22 16 17 C -0.17 -2.45 6.34 -27.33 -0.17 -2.62 16 18 C 0.37 5.97 6.66 -28.34 -0.19 5.78 16 19 O -0.47 -8.43 17.03 6.00 0.10 -8.32 16 20 C -0.13 -2.06 2.33 -91.48 -0.21 -2.28 16 21 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 22 C -0.10 -1.44 4.73 -26.77 -0.13 -1.57 16 23 C -0.12 -1.52 5.91 -26.69 -0.16 -1.68 16 24 C -0.12 -1.73 5.92 -26.69 -0.16 -1.89 16 25 C -0.10 -1.86 4.98 -26.81 -0.13 -2.00 16 26 C 0.12 2.09 1.39 -68.02 -0.09 1.99 16 27 H 0.04 0.81 7.99 -51.93 -0.41 0.40 16 28 N -0.49 -10.98 9.65 -8.11 -0.08 -11.06 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.13 3.14 6.21 -52.48 -0.33 2.81 16 34 H 0.28 6.07 8.30 -40.82 -0.34 5.73 16 35 H 0.04 0.73 8.02 -51.93 -0.42 0.31 16 36 H 0.08 1.43 8.07 -51.93 -0.42 1.02 16 37 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 46 H 0.07 1.53 7.06 -51.93 -0.37 1.16 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -25.87 361.31 -10.71 -36.58 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.39 Total: 8.32 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -3.76 Total: -15.83 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.08 Total: -38.46 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.10 Total: -8.32 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -25.87 -10.71 -36.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163791793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.509 kcal (2) G-P(sol) polarization free energy of solvation -25.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds