Wall clock time and date at job start Tue Mar 31 2020 10:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38684 * 119.27785 * 2 1 4 4 C 1.38001 * 119.62708 * 180.02562 * 3 2 1 5 5 C 1.41003 * 118.28577 * 359.74803 * 4 3 2 6 6 C 1.41013 * 120.71254 * 180.24605 * 5 4 3 7 7 H 1.07998 * 120.00604 * 155.36723 * 6 5 4 8 8 C 1.39949 * 119.99632 * 335.37237 * 6 5 4 9 9 N 1.30868 * 120.00227 * 343.87732 * 8 6 5 10 10 Si 1.86799 * 119.99934 * 163.87004 * 8 6 5 11 11 H 1.48506 * 109.47439 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46825 * 120.00068 * 10 8 6 13 13 H 1.48498 * 109.47610 * 240.00165 * 10 8 6 14 14 C 1.41708 * 118.57979 * 0.48814 * 5 4 3 15 15 N 1.38096 * 119.89880 * 179.77943 * 14 5 4 16 16 C 1.46999 * 111.00287 * 116.26455 * 15 14 5 17 17 C 1.53192 * 109.84595 * 188.42369 * 16 15 14 18 18 C 1.51630 * 108.62855 * 307.24274 * 17 16 15 19 19 O 1.20758 * 121.42570 * 228.86835 * 18 17 16 20 20 C 1.51188 * 117.15563 * 48.84951 * 18 17 16 21 21 H 1.09006 * 109.63747 * 69.06893 * 20 18 17 22 22 C 1.52763 * 110.53752 * 190.04795 * 20 18 17 23 23 C 1.53170 * 108.94745 * 179.57302 * 22 20 18 24 24 C 1.52905 * 109.92064 * 300.45898 * 23 22 20 25 25 C 1.53171 * 109.92550 * 58.87929 * 24 23 22 26 26 C 1.46318 * 110.86869 * 240.38365 * 15 14 5 27 27 H 1.09004 * 108.82914 * 289.10890 * 26 15 14 28 28 N 1.31966 * 119.27825 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47506 * 269.98629 * 1 2 3 30 30 H 1.09000 * 109.46426 * 29.98848 * 1 2 3 31 31 H 1.08997 * 109.46550 * 149.97748 * 1 2 3 32 32 H 1.08008 * 120.18208 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.85990 * 179.97438 * 4 3 2 34 34 H 0.97005 * 120.00428 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.39041 * 68.32825 * 16 15 14 36 36 H 1.08999 * 109.39327 * 308.51802 * 16 15 14 37 37 H 1.08997 * 109.61242 * 66.98901 * 17 16 15 38 38 H 1.08997 * 109.60768 * 187.32917 * 17 16 15 39 39 H 1.09000 * 109.55740 * 299.41375 * 22 20 18 40 40 H 1.09006 * 109.55567 * 59.72963 * 22 20 18 41 41 H 1.08999 * 109.39758 * 60.59594 * 23 22 20 42 42 H 1.08997 * 109.39850 * 180.41368 * 23 22 20 43 43 H 1.08999 * 109.39456 * 179.02562 * 24 23 22 44 44 H 1.09003 * 109.39361 * 298.74295 * 24 23 22 45 45 H 1.08999 * 109.55828 * 60.38173 * 25 24 23 46 46 H 1.09001 * 109.55373 * 180.58347 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2097 0.0000 4 6 3.5653 1.2181 -0.0005 5 6 4.2410 -0.0195 0.0044 6 6 5.6502 -0.0706 0.0093 7 1 6.1578 -0.9389 0.4027 8 6 6.3910 1.0041 -0.4955 9 7 5.8101 1.9030 -1.2485 10 14 8.2092 1.1554 -0.0944 11 1 8.6221 0.0192 0.7681 12 1 8.9972 1.1327 -1.3529 13 1 8.4538 2.4341 0.6199 14 6 3.4737 -1.2108 -0.0010 15 7 4.1074 -2.4378 -0.0009 16 6 3.8049 -3.1870 1.2271 17 6 4.6790 -4.4431 1.2986 18 6 4.5207 -5.2177 0.0047 19 8 4.2944 -6.4038 0.0047 20 6 4.6579 -4.4414 -1.2854 21 1 5.6932 -4.1256 -1.4146 22 6 4.2306 -5.2993 -2.4750 23 6 4.3735 -4.4760 -3.7587 24 6 3.4960 -3.2265 -3.6766 25 6 3.9037 -2.3809 -2.4663 26 6 3.7509 -3.2086 -1.1924 27 1 2.7131 -3.5305 -1.1057 28 7 2.1524 -1.1511 -0.0005 29 1 -0.3634 -0.0002 1.0276 30 1 -0.3632 0.8901 -0.5137 31 1 -0.3632 -0.8898 -0.5142 32 1 1.6364 2.1399 -0.0004 33 1 4.1136 2.1486 -0.0010 34 1 6.3237 2.6477 -1.5988 35 1 2.7541 -3.4768 1.2246 36 1 4.0046 -2.5571 2.0939 37 1 5.7225 -4.1558 1.4278 38 1 4.3631 -5.0611 2.1390 39 1 4.8666 -6.1824 -2.5352 40 1 3.1914 -5.6039 -2.3506 41 1 5.4148 -4.1794 -3.8845 42 1 4.0633 -5.0791 -4.6120 43 1 3.6174 -2.6386 -4.5864 44 1 2.4521 -3.5233 -3.5757 45 1 4.9448 -2.0749 -2.5689 46 1 3.2679 -1.4975 -2.4076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163791793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:04 Heat of formation + Delta-G solvation = -32.738081 kcal Electronic energy + Delta-G solvation = -27791.882785 eV Core-core repulsion = 24258.573575 eV Total energy + Delta-G solvation = -3533.309209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.87305 -40.31945 -38.74746 -37.04019 -36.00800 -33.52900 -32.60212 -31.61628 -31.40455 -29.96231 -29.36474 -25.90311 -24.72871 -24.07964 -23.77480 -22.47557 -21.50885 -20.82502 -20.07248 -19.10555 -17.67004 -17.33212 -17.05731 -16.42300 -16.31452 -16.11023 -15.86131 -15.57620 -15.30520 -14.80957 -14.58197 -14.45492 -14.30989 -14.06750 -13.74473 -13.49963 -13.30546 -13.16776 -13.04540 -13.02287 -12.72007 -12.59709 -12.57433 -12.44625 -12.22723 -12.12505 -12.09421 -11.70270 -11.60889 -11.46637 -11.10147 -11.08964 -10.29754 -10.18533 -9.96113 -9.23828 -9.16612 -8.59162 -6.23612 0.79507 0.89743 1.08431 1.44482 1.54768 1.58323 2.23740 2.78060 2.89621 3.04909 3.62269 3.68202 3.79294 3.90811 4.09437 4.13180 4.18282 4.23187 4.24439 4.37008 4.43648 4.47868 4.51647 4.55083 4.67041 4.78260 4.80926 4.86280 4.94758 4.97836 5.00048 5.01170 5.08649 5.13372 5.17313 5.21763 5.24285 5.24812 5.35432 5.37349 5.38454 5.51360 5.79305 5.90671 6.19883 6.25068 6.40544 6.49517 6.77732 6.88414 7.13242 7.79008 8.32177 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.006313 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.905764 B = 4434.462739 C = 5405.168427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.020 4.020 3 C -0.150 4.150 4 C -0.160 4.160 5 C 0.067 3.933 6 C -0.433 4.433 7 H 0.090 0.910 8 C 0.035 3.965 9 N -0.818 5.818 10 Si 0.976 3.024 11 H -0.254 1.254 12 H -0.270 1.270 13 H -0.270 1.270 14 C 0.163 3.837 15 N -0.457 5.457 16 C 0.074 3.926 17 C -0.156 4.156 18 C 0.373 3.627 19 O -0.483 6.483 20 C -0.127 4.127 21 H 0.119 0.881 22 C -0.098 4.098 23 C -0.109 4.109 24 C -0.111 4.111 25 C -0.093 4.093 26 C 0.122 3.878 27 H 0.021 0.979 28 N -0.500 5.500 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.288 0.712 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -6.396 -1.312 6.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.160 4.160 3 C -0.170 4.170 4 C -0.186 4.186 5 C 0.061 3.939 6 C -0.462 4.462 7 H 0.108 0.892 8 C -0.181 4.181 9 N -0.444 5.444 10 Si 0.797 3.203 11 H -0.177 1.177 12 H -0.195 1.195 13 H -0.195 1.195 14 C -0.069 4.069 15 N -0.179 5.179 16 C -0.054 4.054 17 C -0.194 4.194 18 C 0.251 3.749 19 O -0.359 6.359 20 C -0.147 4.147 21 H 0.137 0.863 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.131 4.131 26 C 0.014 3.986 27 H 0.039 0.961 28 N -0.212 5.212 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.197 -7.488 -1.455 7.630 hybrid contribution 0.179 1.487 0.229 1.515 sum 0.376 -6.001 -1.226 6.137 Atomic orbital electron populations 1.20293 0.88942 1.01739 1.01466 1.20685 0.96538 0.87912 1.10871 1.21680 0.94911 0.98195 1.02235 1.21678 0.93307 0.98483 1.05160 1.18378 0.94876 0.90418 0.90229 1.19665 0.90958 1.02209 1.33373 0.89167 1.26780 1.05285 0.93897 0.92092 1.69873 1.40375 1.11056 1.23078 0.85232 0.76573 0.79377 0.79102 1.17679 1.19527 1.19459 1.19296 0.86257 0.90184 1.11142 1.59292 1.55815 1.01056 1.01731 1.21935 0.96590 0.93779 0.93047 1.22389 1.03924 0.96244 0.96797 1.25111 0.68455 0.87719 0.93608 1.90334 1.37019 1.18213 1.90330 1.21991 1.02845 0.95273 0.94553 0.86336 1.21356 1.01510 0.97680 0.93056 1.21507 1.00430 0.95470 0.97230 1.21502 0.99652 0.96765 0.97009 1.21272 1.01096 0.96972 0.93734 1.21156 0.95109 0.91786 0.90519 0.96065 1.66882 1.11284 1.30832 1.12245 0.91929 0.90949 0.92872 0.86313 0.86757 0.90125 0.95570 0.90649 0.86055 0.87604 0.90183 0.92695 0.91092 0.89701 0.91135 0.92645 0.92361 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.15 71.24 0.72 -1.54 16 2 C -0.02 -0.88 6.79 42.65 0.29 -0.59 16 3 C -0.15 -6.72 9.69 22.32 0.22 -6.50 16 4 C -0.16 -7.95 8.79 22.89 0.20 -7.75 16 5 C 0.07 3.35 5.60 -21.06 -0.12 3.23 16 6 C -0.43 -21.08 8.71 23.37 0.20 -20.88 16 7 H 0.09 4.29 7.60 -2.91 -0.02 4.27 16 8 C 0.04 1.63 5.20 85.25 0.44 2.07 16 9 N -0.82 -39.57 10.90 21.83 0.24 -39.34 16 10 Si 0.98 35.48 29.59 68.60 2.03 37.51 16 11 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 12 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 13 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 14 C 0.16 7.55 3.61 134.05 0.48 8.03 16 15 N -0.46 -18.25 3.69 -677.03 -2.50 -20.75 16 16 C 0.07 2.59 5.27 86.35 0.46 3.05 16 17 C -0.16 -4.35 6.34 30.21 0.19 -4.16 16 18 C 0.37 11.45 6.66 29.55 0.20 11.65 16 19 O -0.48 -16.48 17.03 -1.44 -0.02 -16.51 16 20 C -0.13 -3.84 2.33 -11.35 -0.03 -3.87 16 21 H 0.12 3.45 8.14 -2.38 -0.02 3.43 16 22 C -0.10 -2.57 4.73 30.57 0.14 -2.43 16 23 C -0.11 -2.59 5.91 30.62 0.18 -2.40 16 24 C -0.11 -3.22 5.92 30.62 0.18 -3.04 16 25 C -0.09 -3.47 4.98 30.54 0.15 -3.31 16 26 C 0.12 4.45 1.39 45.03 0.06 4.52 16 27 H 0.02 0.86 7.99 -2.38 -0.02 0.84 16 28 N -0.50 -23.07 9.65 -179.57 -1.73 -24.80 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 33 H 0.11 5.89 6.21 -2.91 -0.02 5.87 16 34 H 0.29 12.66 8.30 -92.70 -0.77 11.89 16 35 H 0.03 0.98 8.02 -2.38 -0.02 0.96 16 36 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 37 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.08 1.93 8.09 -2.39 -0.02 1.91 16 40 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 46 H 0.03 1.32 7.06 -2.39 -0.02 1.31 16 Total: -1.00 -57.16 361.31 2.95 -54.20 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.96 Total: 33.61 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 3.98 Total: -23.93 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -4.00 Total: -84.89 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.02 Total: -16.51 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -57.16 2.95 -54.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163791793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.466 kcal (2) G-P(sol) polarization free energy of solvation -57.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds