Wall clock time and date at job start Tue Mar 31 2020 10:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31480 * 119.81478 * 2 1 4 4 C 1.32743 * 121.73024 * 180.27085 * 3 2 1 5 5 N 1.38371 * 119.43332 * 179.75276 * 4 3 2 6 6 C 1.46995 * 110.99908 * 86.10734 * 5 4 3 7 7 C 1.53200 * 109.91533 * 171.51720 * 6 5 4 8 8 C 1.51638 * 108.61857 * 52.81975 * 7 6 5 9 9 O 1.20755 * 121.42023 * 131.17170 * 8 7 6 10 10 C 1.51183 * 117.15222 * 311.14362 * 8 7 6 11 11 H 1.09003 * 110.13111 * 290.62665 * 10 8 7 12 12 C 1.52766 * 110.53507 * 169.33765 * 10 8 7 13 13 C 1.53170 * 108.93758 * 180.39416 * 12 10 8 14 14 C 1.52896 * 109.92368 * 59.53941 * 13 12 10 15 15 C 1.53178 * 109.85788 * 301.17788 * 14 13 12 16 16 C 1.46485 * 110.99761 * 322.01638 * 5 4 3 17 17 H 1.09003 * 108.82158 * 70.81542 * 16 5 4 18 18 C 1.39712 * 121.14002 * 359.47513 * 4 3 2 19 19 C 1.36562 * 119.48995 * 0.25238 * 18 4 3 20 20 C 1.40758 * 119.81467 * 179.75544 * 2 1 3 21 21 C 1.41201 * 120.56999 * 359.96945 * 20 2 1 22 22 H 1.07992 * 120.00288 * 334.78973 * 21 20 2 23 23 C 1.39873 * 119.99675 * 154.78640 * 21 20 2 24 24 N 1.30899 * 120.00329 * 343.62779 * 23 21 20 25 25 Si 1.86801 * 119.99790 * 163.62305 * 23 21 20 26 26 H 1.48505 * 109.46694 * 85.09079 * 25 23 21 27 27 H 1.48498 * 109.47008 * 205.08598 * 25 23 21 28 28 H 1.48497 * 109.47141 * 325.09303 * 25 23 21 29 29 H 1.08995 * 109.47137 * 270.24962 * 1 2 3 30 30 H 1.08996 * 109.47748 * 30.25093 * 1 2 3 31 31 H 1.09001 * 109.47249 * 150.24871 * 1 2 3 32 32 H 1.08998 * 109.40138 * 291.65761 * 6 5 4 33 33 H 1.09001 * 109.39776 * 51.48041 * 6 5 4 34 34 H 1.09001 * 109.61030 * 172.55440 * 7 6 5 35 35 H 1.08991 * 109.61618 * 293.07330 * 7 6 5 36 36 H 1.09002 * 109.56268 * 60.55366 * 12 10 8 37 37 H 1.09002 * 109.64811 * 300.28621 * 12 10 8 38 38 H 1.08999 * 109.39843 * 299.40014 * 13 12 10 39 39 H 1.09001 * 109.32259 * 179.62672 * 13 12 10 40 40 H 1.08998 * 109.39502 * 61.27132 * 14 13 12 41 41 H 1.09002 * 109.39171 * 181.08478 * 14 13 12 42 42 H 1.08999 * 109.55351 * 179.25446 * 15 14 13 43 43 H 1.09001 * 109.55448 * 299.55839 * 15 14 13 44 44 H 1.07998 * 120.25363 * 180.28033 * 18 4 3 45 45 H 1.08004 * 120.79403 * 179.97438 * 19 18 4 46 46 H 0.96992 * 120.00340 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1851 -0.0053 5 7 4.1266 2.4123 -0.0103 6 6 4.2928 2.9252 1.3572 7 6 5.1831 4.1719 1.3424 8 6 4.6168 5.1593 0.3405 9 8 4.4481 6.3201 0.6271 10 6 4.2731 4.6284 -1.0327 11 1 5.1835 4.3713 -1.5742 12 6 3.4802 5.6660 -1.8254 13 6 3.1436 5.0880 -3.2033 14 6 2.3171 3.8114 -3.0451 15 6 3.1000 2.7833 -2.2227 16 6 3.4099 3.3742 -0.8510 17 1 2.4775 3.6471 -0.3566 18 6 4.2495 0.0142 -0.0003 19 6 3.6199 -1.1976 0.0051 20 6 2.2068 -1.2213 0.0052 21 6 1.5090 -2.4488 0.0111 22 1 0.5068 -2.4983 0.4101 23 6 2.1160 -3.6007 -0.5000 24 7 3.1746 -3.4990 -1.2632 25 14 1.4159 -5.2841 -0.0934 26 1 0.3253 -5.6101 -1.0471 27 1 2.4887 -6.3053 -0.2004 28 1 0.8772 -5.2751 1.2904 29 1 -0.3633 0.0045 1.0276 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3634 -0.8922 -0.5100 32 1 3.3167 3.1823 1.7686 33 1 4.7566 2.1583 1.9776 34 1 5.1961 4.6240 2.3342 35 1 6.1960 3.8948 1.0506 36 1 4.0785 6.5693 -1.9448 37 1 2.5585 5.9062 -1.2954 38 1 4.0671 4.8578 -3.7347 39 1 2.5718 5.8212 -3.7721 40 1 1.3824 4.0462 -2.5360 41 1 2.0990 3.3972 -4.0295 42 1 2.5012 1.8805 -2.1018 43 1 4.0311 2.5394 -2.7343 44 1 5.3281 0.0670 -0.0001 45 1 4.1883 -2.1160 0.0087 46 1 3.5957 -4.2978 -1.6173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163794128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:28 Heat of formation + Delta-G solvation = -19.849310 kcal Electronic energy + Delta-G solvation = -27163.786459 eV Core-core repulsion = 23631.036149 eV Total energy + Delta-G solvation = -3532.750310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60082 -38.84110 -37.48155 -35.92033 -34.00430 -32.11431 -31.30450 -30.36952 -30.05852 -28.89184 -26.95238 -24.77748 -23.46406 -22.92252 -22.16401 -20.67284 -20.08247 -19.67039 -18.87079 -17.39003 -16.40258 -15.83282 -15.55696 -15.17738 -14.90770 -14.83921 -14.55768 -14.16037 -13.82882 -13.48803 -13.28683 -13.06386 -12.90059 -12.59415 -12.20818 -12.09499 -11.89580 -11.84049 -11.65651 -11.50516 -11.40173 -11.12992 -11.09008 -11.01373 -10.96222 -10.89193 -10.64138 -10.54522 -10.35470 -9.94504 -9.75826 -9.41774 -9.11919 -8.53321 -8.26418 -7.94141 -7.30493 -6.91160 -4.52715 2.06206 2.50028 2.89708 2.96747 2.99299 3.07169 3.77969 4.11601 4.25302 4.44102 4.82599 4.91430 5.05012 5.19786 5.28843 5.31404 5.39637 5.45930 5.54633 5.58755 5.67974 5.70238 5.82435 5.87539 5.96192 6.01333 6.11853 6.14217 6.24175 6.28834 6.29377 6.32030 6.35894 6.47950 6.59398 6.64501 6.72131 6.79792 6.81975 6.88179 7.01832 7.26859 7.30155 7.48077 7.60036 7.73442 7.91437 8.15019 8.41635 8.59384 8.72429 9.52382 9.96833 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.003790 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.963344 B = 7386.230048 C = 7869.397144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.012 3.988 3 N -0.482 5.482 4 C 0.144 3.856 5 N -0.465 5.465 6 C 0.067 3.933 7 C -0.165 4.165 8 C 0.369 3.631 9 O -0.464 6.464 10 C -0.133 4.133 11 H 0.109 0.891 12 C -0.103 4.103 13 C -0.117 4.117 14 C -0.116 4.116 15 C -0.106 4.106 16 C 0.115 3.885 17 H 0.051 0.949 18 C -0.118 4.118 19 C -0.133 4.133 20 C 0.070 3.930 21 C -0.442 4.442 22 H 0.085 0.915 23 C 0.074 3.926 24 N -0.786 5.786 25 Si 0.910 3.090 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.259 1.259 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.126 0.874 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 7.907 -0.848 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 N -0.194 5.194 4 C -0.084 4.084 5 N -0.187 5.187 6 C -0.060 4.060 7 C -0.203 4.203 8 C 0.245 3.755 9 O -0.338 6.338 10 C -0.152 4.152 11 H 0.127 0.873 12 C -0.141 4.141 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.144 4.144 16 C 0.007 3.993 17 H 0.069 0.931 18 C -0.140 4.140 19 C -0.158 4.158 20 C 0.065 3.935 21 C -0.472 4.472 22 H 0.103 0.897 23 C -0.145 4.145 24 N -0.410 5.410 25 Si 0.734 3.266 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.183 1.183 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.144 0.856 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.357 9.089 -1.025 9.445 hybrid contribution -0.342 -1.659 0.423 1.746 sum 2.015 7.430 -0.602 7.722 Atomic orbital electron populations 1.20243 0.91372 1.01048 1.00153 1.20763 0.94756 0.87795 1.09887 1.66798 1.09497 1.31221 1.11916 1.18538 0.87329 0.88647 1.13882 1.59490 1.48626 1.01554 1.08983 1.22063 0.98018 0.95052 0.90905 1.22432 1.01874 0.96401 0.99630 1.24974 0.72121 0.87965 0.90472 1.90346 1.42790 1.19979 1.80711 1.22027 1.01317 0.96911 0.94957 0.87295 1.21370 1.00008 0.97089 0.95627 1.21552 1.00198 0.97278 0.96427 1.21526 0.98767 0.95168 0.99978 1.21481 1.00538 0.98919 0.93428 1.21176 0.94048 0.89380 0.94739 0.93112 1.20892 0.98631 0.92186 1.02277 1.21316 0.94700 0.96515 1.03311 1.18318 0.92430 0.93053 0.89671 1.19547 1.01605 0.91942 1.34059 0.89733 1.25986 0.94230 1.01739 0.92533 1.69815 1.17400 1.32110 1.21665 0.86281 0.79518 0.80405 0.80399 1.19198 1.20016 1.18338 0.93585 0.93472 0.91526 0.94366 0.89859 0.89405 0.87756 0.91514 0.91793 0.91989 0.92161 0.92140 0.92047 0.89919 0.91986 0.88040 0.85587 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 9.58 36.00 0.34 -1.07 16 2 C 0.01 0.27 6.86 -81.79 -0.56 -0.29 16 3 N -0.48 -10.77 7.96 -8.04 -0.06 -10.83 16 4 C 0.14 3.03 4.37 -155.12 -0.68 2.35 16 5 N -0.47 -8.22 4.46 -165.74 -0.74 -8.96 16 6 C 0.07 1.05 5.41 -3.67 -0.02 1.03 16 7 C -0.17 -2.14 6.34 -27.32 -0.17 -2.32 16 8 C 0.37 5.40 6.66 -28.34 -0.19 5.21 16 9 O -0.46 -7.80 17.03 6.00 0.10 -7.70 16 10 C -0.13 -1.86 2.35 -91.48 -0.22 -2.08 16 11 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 12 C -0.10 -1.33 4.72 -26.76 -0.13 -1.46 16 13 C -0.12 -1.39 5.91 -26.70 -0.16 -1.54 16 14 C -0.12 -1.60 5.91 -26.69 -0.16 -1.76 16 15 C -0.11 -1.76 4.94 -26.88 -0.13 -1.89 16 16 C 0.12 1.90 1.16 -68.00 -0.08 1.82 16 17 H 0.05 0.95 7.83 -51.93 -0.41 0.54 16 18 C -0.12 -2.59 9.94 -39.64 -0.39 -2.98 16 19 C -0.13 -3.18 8.73 -39.01 -0.34 -3.52 16 20 C 0.07 1.72 5.58 -106.65 -0.59 1.12 16 21 C -0.44 -10.66 8.14 -37.85 -0.31 -10.97 16 22 H 0.08 1.94 6.86 -52.49 -0.36 1.58 16 23 C 0.07 1.71 5.18 -17.34 -0.09 1.62 16 24 N -0.79 -18.72 10.95 55.54 0.61 -18.12 16 25 Si 0.91 17.23 29.59 -169.99 -5.03 12.20 16 26 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 27 H -0.28 -5.13 7.11 56.52 0.40 -4.72 16 28 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.31 6.76 -51.93 -0.35 0.96 16 32 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 33 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.67 6.11 -51.93 -0.32 1.35 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 45 H 0.13 3.11 6.26 -52.48 -0.33 2.78 16 46 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -25.94 357.05 -10.84 -36.78 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.23 Total: 7.98 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.87 Total: -16.73 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.19 Total: -37.91 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.10 Total: -7.70 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -25.94 -10.84 -36.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163794128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.931 kcal (2) G-P(sol) polarization free energy of solvation -25.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds