Wall clock time and date at job start Tue Mar 31 2020 10:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31480 * 119.81478 * 2 1 4 4 C 1.32743 * 121.73024 * 180.27085 * 3 2 1 5 5 N 1.38371 * 119.43332 * 179.75276 * 4 3 2 6 6 C 1.46995 * 110.99908 * 86.10734 * 5 4 3 7 7 C 1.53200 * 109.91533 * 171.51720 * 6 5 4 8 8 C 1.51638 * 108.61857 * 52.81975 * 7 6 5 9 9 O 1.20755 * 121.42023 * 131.17170 * 8 7 6 10 10 C 1.51183 * 117.15222 * 311.14362 * 8 7 6 11 11 H 1.09003 * 110.13111 * 290.62665 * 10 8 7 12 12 C 1.52766 * 110.53507 * 169.33765 * 10 8 7 13 13 C 1.53170 * 108.93758 * 180.39416 * 12 10 8 14 14 C 1.52896 * 109.92368 * 59.53941 * 13 12 10 15 15 C 1.53178 * 109.85788 * 301.17788 * 14 13 12 16 16 C 1.46485 * 110.99761 * 322.01638 * 5 4 3 17 17 H 1.09003 * 108.82158 * 70.81542 * 16 5 4 18 18 C 1.39712 * 121.14002 * 359.47513 * 4 3 2 19 19 C 1.36562 * 119.48995 * 0.25238 * 18 4 3 20 20 C 1.40758 * 119.81467 * 179.75544 * 2 1 3 21 21 C 1.41201 * 120.56999 * 359.96945 * 20 2 1 22 22 H 1.07992 * 120.00288 * 334.78973 * 21 20 2 23 23 C 1.39873 * 119.99675 * 154.78640 * 21 20 2 24 24 N 1.30899 * 120.00329 * 343.62779 * 23 21 20 25 25 Si 1.86801 * 119.99790 * 163.62305 * 23 21 20 26 26 H 1.48505 * 109.46694 * 85.09079 * 25 23 21 27 27 H 1.48498 * 109.47008 * 205.08598 * 25 23 21 28 28 H 1.48497 * 109.47141 * 325.09303 * 25 23 21 29 29 H 1.08995 * 109.47137 * 270.24962 * 1 2 3 30 30 H 1.08996 * 109.47748 * 30.25093 * 1 2 3 31 31 H 1.09001 * 109.47249 * 150.24871 * 1 2 3 32 32 H 1.08998 * 109.40138 * 291.65761 * 6 5 4 33 33 H 1.09001 * 109.39776 * 51.48041 * 6 5 4 34 34 H 1.09001 * 109.61030 * 172.55440 * 7 6 5 35 35 H 1.08991 * 109.61618 * 293.07330 * 7 6 5 36 36 H 1.09002 * 109.56268 * 60.55366 * 12 10 8 37 37 H 1.09002 * 109.64811 * 300.28621 * 12 10 8 38 38 H 1.08999 * 109.39843 * 299.40014 * 13 12 10 39 39 H 1.09001 * 109.32259 * 179.62672 * 13 12 10 40 40 H 1.08998 * 109.39502 * 61.27132 * 14 13 12 41 41 H 1.09002 * 109.39171 * 181.08478 * 14 13 12 42 42 H 1.08999 * 109.55351 * 179.25446 * 15 14 13 43 43 H 1.09001 * 109.55448 * 299.55839 * 15 14 13 44 44 H 1.07998 * 120.25363 * 180.28033 * 18 4 3 45 45 H 1.08004 * 120.79403 * 179.97438 * 19 18 4 46 46 H 0.96992 * 120.00340 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1851 -0.0053 5 7 4.1266 2.4123 -0.0103 6 6 4.2928 2.9252 1.3572 7 6 5.1831 4.1719 1.3424 8 6 4.6168 5.1593 0.3405 9 8 4.4481 6.3201 0.6271 10 6 4.2731 4.6284 -1.0327 11 1 5.1835 4.3713 -1.5742 12 6 3.4802 5.6660 -1.8254 13 6 3.1436 5.0880 -3.2033 14 6 2.3171 3.8114 -3.0451 15 6 3.1000 2.7833 -2.2227 16 6 3.4099 3.3742 -0.8510 17 1 2.4775 3.6471 -0.3566 18 6 4.2495 0.0142 -0.0003 19 6 3.6199 -1.1976 0.0051 20 6 2.2068 -1.2213 0.0052 21 6 1.5090 -2.4488 0.0111 22 1 0.5068 -2.4983 0.4101 23 6 2.1160 -3.6007 -0.5000 24 7 3.1746 -3.4990 -1.2632 25 14 1.4159 -5.2841 -0.0934 26 1 0.3253 -5.6101 -1.0471 27 1 2.4887 -6.3053 -0.2004 28 1 0.8772 -5.2751 1.2904 29 1 -0.3633 0.0045 1.0276 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3634 -0.8922 -0.5100 32 1 3.3167 3.1823 1.7686 33 1 4.7566 2.1583 1.9776 34 1 5.1961 4.6240 2.3342 35 1 6.1960 3.8948 1.0506 36 1 4.0785 6.5693 -1.9448 37 1 2.5585 5.9062 -1.2954 38 1 4.0671 4.8578 -3.7347 39 1 2.5718 5.8212 -3.7721 40 1 1.3824 4.0462 -2.5360 41 1 2.0990 3.3972 -4.0295 42 1 2.5012 1.8805 -2.1018 43 1 4.0311 2.5394 -2.7343 44 1 5.3281 0.0670 -0.0001 45 1 4.1883 -2.1160 0.0087 46 1 3.5957 -4.2978 -1.6173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163794128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:27 Heat of formation + Delta-G solvation = -31.631651 kcal Electronic energy + Delta-G solvation = -27164.297380 eV Core-core repulsion = 23631.036149 eV Total energy + Delta-G solvation = -3533.261231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92943 -40.39848 -38.84296 -37.25369 -35.68809 -33.61594 -32.93385 -31.69246 -31.42866 -30.24075 -28.67928 -26.43140 -24.72978 -24.10679 -23.71244 -22.30785 -21.65676 -20.84549 -20.08989 -19.16252 -17.88340 -17.15027 -17.12224 -16.58184 -16.32255 -16.14881 -15.88107 -15.47954 -15.38215 -14.90567 -14.54489 -14.44542 -14.30390 -14.05075 -13.75686 -13.51239 -13.48048 -13.31408 -13.03955 -12.92537 -12.75114 -12.65502 -12.55295 -12.46111 -12.26152 -12.15820 -12.12976 -11.70921 -11.62386 -11.48303 -11.12825 -11.07428 -10.31246 -10.18632 -10.03751 -9.63093 -9.02305 -8.63145 -6.34186 0.77585 0.88564 1.10125 1.41234 1.49401 1.55626 2.19645 2.69122 2.83130 3.03072 3.60779 3.67061 3.78150 3.86058 4.04175 4.11682 4.15011 4.22533 4.24167 4.36517 4.42690 4.50825 4.51621 4.58518 4.71261 4.77700 4.79590 4.86032 4.94421 4.97144 4.98817 5.01589 5.06624 5.12022 5.15066 5.19084 5.21642 5.24539 5.29921 5.40975 5.49536 5.54325 5.57127 5.93006 6.00321 6.18506 6.35834 6.45755 6.66321 6.80923 6.97396 7.74881 8.27012 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.003790 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.963344 B = 7386.230048 C = 7869.397144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.007 4.007 3 N -0.490 5.490 4 C 0.155 3.845 5 N -0.464 5.464 6 C 0.069 3.931 7 C -0.154 4.154 8 C 0.370 3.630 9 O -0.485 6.485 10 C -0.127 4.127 11 H 0.126 0.874 12 C -0.101 4.101 13 C -0.109 4.109 14 C -0.112 4.112 15 C -0.102 4.102 16 C 0.121 3.879 17 H 0.025 0.975 18 C -0.125 4.125 19 C -0.149 4.149 20 C 0.041 3.959 21 C -0.470 4.470 22 H 0.087 0.913 23 C 0.038 3.962 24 N -0.817 5.817 25 Si 0.980 3.020 26 H -0.262 1.262 27 H -0.269 1.269 28 H -0.258 1.258 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 8.862 -1.117 9.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.150 4.150 3 N -0.202 5.202 4 C -0.073 4.073 5 N -0.186 5.186 6 C -0.059 4.059 7 C -0.192 4.192 8 C 0.247 3.753 9 O -0.360 6.360 10 C -0.146 4.146 11 H 0.144 0.856 12 C -0.139 4.139 13 C -0.146 4.146 14 C -0.150 4.150 15 C -0.140 4.140 16 C 0.012 3.988 17 H 0.044 0.956 18 C -0.146 4.146 19 C -0.175 4.175 20 C 0.037 3.963 21 C -0.499 4.499 22 H 0.105 0.895 23 C -0.179 4.179 24 N -0.443 5.443 25 Si 0.801 3.199 26 H -0.186 1.186 27 H -0.193 1.193 28 H -0.182 1.182 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.147 0.853 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.078 10.057 -1.293 10.597 hybrid contribution -0.523 -1.846 0.502 1.984 sum 2.556 8.211 -0.791 8.636 Atomic orbital electron populations 1.20204 0.89595 1.01324 1.00932 1.21229 0.96273 0.87746 1.09744 1.66924 1.10170 1.30884 1.12230 1.18860 0.87055 0.89950 1.11456 1.59561 1.47835 1.00776 1.10410 1.22079 0.97882 0.96456 0.89456 1.22400 1.02153 0.94336 1.00302 1.25186 0.71406 0.87828 0.90839 1.90350 1.43705 1.20945 1.81033 1.22020 1.01568 0.95665 0.95371 0.85648 1.21371 0.99421 0.97192 0.95874 1.21511 1.00679 0.96342 0.96095 1.21491 0.98314 0.95519 0.99676 1.21410 1.00217 0.98224 0.94165 1.21124 0.93504 0.90088 0.94047 0.95647 1.21088 0.99631 0.91901 1.02015 1.21317 0.94827 0.96842 1.04484 1.18633 0.92973 0.93982 0.90706 1.19768 1.02131 0.92700 1.35339 0.89462 1.26765 0.94362 1.04956 0.91780 1.69863 1.18583 1.33389 1.22423 0.85228 0.78876 0.75763 0.80032 1.18625 1.19312 1.18194 0.92456 0.92678 0.91617 0.96143 0.89449 0.87682 0.85304 0.90268 0.93091 0.90646 0.90113 0.93058 0.91135 0.93973 0.91810 0.86241 0.86834 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.57 9.58 71.23 0.68 -1.88 16 2 C -0.01 -0.33 6.86 43.23 0.30 -0.04 16 3 N -0.49 -22.38 7.96 -179.36 -1.43 -23.80 16 4 C 0.16 6.61 4.37 133.32 0.58 7.19 16 5 N -0.46 -16.10 4.46 -678.29 -3.02 -19.12 16 6 C 0.07 2.07 5.41 86.35 0.47 2.54 16 7 C -0.15 -3.60 6.34 30.21 0.19 -3.41 16 8 C 0.37 10.02 6.66 29.55 0.20 10.22 16 9 O -0.48 -15.31 17.03 -1.44 -0.02 -15.34 16 10 C -0.13 -3.31 2.35 -11.35 -0.03 -3.33 16 11 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 12 C -0.10 -2.38 4.72 30.57 0.14 -2.24 16 13 C -0.11 -2.28 5.91 30.62 0.18 -2.10 16 14 C -0.11 -2.95 5.91 30.62 0.18 -2.77 16 15 C -0.10 -3.38 4.94 30.50 0.15 -3.23 16 16 C 0.12 3.91 1.16 44.95 0.05 3.96 16 17 H 0.03 0.96 7.83 -2.39 -0.02 0.94 16 18 C -0.12 -5.55 9.94 22.23 0.22 -5.33 16 19 C -0.15 -7.37 8.73 22.64 0.20 -7.17 16 20 C 0.04 2.11 5.58 -21.18 -0.12 1.99 16 21 C -0.47 -23.28 8.14 23.39 0.19 -23.09 16 22 H 0.09 4.11 6.86 -2.91 -0.02 4.09 16 23 C 0.04 1.76 5.18 85.23 0.44 2.20 16 24 N -0.82 -39.86 10.95 21.82 0.24 -39.62 16 25 Si 0.98 35.41 29.59 68.60 2.03 37.44 16 26 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 27 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 28 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 2.65 6.76 -2.39 -0.02 2.63 16 32 H 0.02 0.69 8.06 -2.39 -0.02 0.67 16 33 H 0.09 2.57 8.07 -2.39 -0.02 2.56 16 34 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.74 6.11 -2.39 -0.01 1.72 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 45 H 0.11 5.83 6.26 -2.91 -0.02 5.81 16 46 H 0.29 12.83 8.30 -92.71 -0.77 12.06 16 Total: -1.00 -57.37 357.05 2.79 -54.57 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.97 Total: 32.37 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 4.03 Total: -26.50 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -4.21 Total: -82.55 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.02 Total: -15.34 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Total: -57.37 2.79 -54.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163794128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.941 kcal (2) G-P(sol) polarization free energy of solvation -57.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds