Wall clock time and date at job start Tue Mar 31 2020 11:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38677 * 120.41621 * 2 1 4 4 C 1.38629 * 118.41777 * 179.70694 * 3 2 1 5 5 C 1.38231 * 119.16129 * 0.51294 * 4 3 2 6 6 C 1.50695 * 119.61842 * 179.75120 * 5 4 3 7 7 C 1.50696 * 115.54989 * 75.23361 * 6 5 4 8 8 O 1.21282 * 120.00307 * 220.28603 * 7 6 5 9 9 N 1.34777 * 120.00189 * 40.01668 * 7 6 5 10 10 C 1.46497 * 120.00522 * 184.39150 * 9 7 6 11 11 H 1.09006 * 109.41019 * 324.99807 * 10 9 7 12 12 C 1.52957 * 109.41340 * 84.85250 * 10 9 7 13 13 C 1.53243 * 109.39948 * 183.77895 * 12 10 9 14 14 C 1.51280 * 108.48168 * 305.26615 * 13 12 10 15 15 C 1.37876 * 120.84702 * 231.36582 * 14 13 12 16 16 N 1.31513 * 119.99373 * 180.02562 * 15 14 13 17 17 Si 1.86793 * 120.00365 * 0.02562 * 15 14 13 18 18 H 1.48500 * 109.47299 * 89.99864 * 17 15 14 19 19 H 1.48502 * 109.47108 * 210.00000 * 17 15 14 20 20 H 1.48499 * 109.47153 * 329.99848 * 17 15 14 21 21 C 1.51265 * 118.29449 * 51.38767 * 14 13 12 22 22 C 1.52959 * 109.41678 * 205.13895 * 10 9 7 23 23 C 1.53000 * 117.51727 * 220.93826 * 6 5 4 24 24 C 1.53001 * 60.00038 * 107.48017 * 23 6 5 25 25 N 1.31857 * 120.76110 * 359.47965 * 5 4 3 26 26 C 1.31886 * 121.72947 * 0.27339 * 25 5 4 27 27 H 1.08995 * 109.47444 * 270.02060 * 1 2 3 28 28 H 1.09003 * 109.47116 * 30.02130 * 1 2 3 29 29 H 1.09004 * 109.47238 * 150.01854 * 1 2 3 30 30 H 1.07995 * 120.79016 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.41975 * 180.28782 * 4 3 2 32 32 H 0.96999 * 119.99392 * 4.38512 * 9 7 6 33 33 H 1.09000 * 109.48637 * 303.68387 * 12 10 9 34 34 H 1.08999 * 109.48383 * 63.72863 * 12 10 9 35 35 H 1.09000 * 109.62368 * 185.59010 * 13 12 10 36 36 H 1.08997 * 109.68752 * 64.97876 * 13 12 10 37 37 H 0.97000 * 120.00027 * 179.97438 * 16 15 14 38 38 H 1.09006 * 109.62288 * 188.93318 * 21 14 13 39 39 H 1.09000 * 109.78620 * 68.46705 * 21 14 13 40 40 H 1.09005 * 109.47718 * 296.27429 * 22 10 9 41 41 H 1.08998 * 109.47954 * 56.29850 * 22 10 9 42 42 H 1.09006 * 117.49602 * 214.96840 * 23 6 5 43 43 H 1.08992 * 117.50166 * 359.97438 * 23 6 5 44 44 H 1.08996 * 117.49740 * 252.50588 * 24 23 6 45 45 H 1.09006 * 117.51735 * 107.48333 * 24 23 6 46 46 H 1.07997 * 119.61689 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0062 5 6 4.2256 -0.0822 0.0014 6 6 5.7312 -0.1468 0.0024 7 6 6.3942 0.1659 1.3190 8 8 7.4080 0.8310 1.3447 9 7 5.8577 -0.2891 2.4686 10 6 6.4465 0.0942 3.7541 11 1 7.5285 0.1732 3.6478 12 6 5.8786 1.4457 4.1906 13 6 6.5637 1.8910 5.4870 14 6 6.4093 0.7905 6.5135 15 6 5.9186 1.0624 7.7729 16 7 5.7918 0.0929 8.6525 17 14 5.4339 2.8075 8.2300 18 1 4.0037 3.0275 7.8962 19 1 5.6397 3.0130 9.6863 20 1 6.2730 3.7692 7.4709 21 6 6.8076 -0.6154 6.1227 22 6 6.1150 -0.9690 4.8026 23 6 6.3943 -1.1972 -0.8907 24 6 6.4575 0.2827 -1.2739 25 7 3.5254 -1.1996 0.0013 26 6 2.2066 -1.1916 0.0004 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5136 30 1 1.6889 2.1423 0.0004 31 1 4.1735 2.0592 0.0111 32 1 5.0815 -0.8704 2.4448 33 1 6.0613 2.1857 3.4114 34 1 4.8057 1.3520 4.3588 35 1 6.0938 2.8032 5.8547 36 1 7.6223 2.0710 5.2997 37 1 5.4469 0.2841 9.5387 38 1 6.4945 -1.3137 6.8990 39 1 7.8887 -0.6707 5.9953 40 1 5.0363 -1.0043 4.9559 41 1 6.4651 -1.9417 4.4571 42 1 7.3102 -1.6622 -0.5259 43 1 5.7416 -1.8422 -1.4789 44 1 5.8464 0.6114 -2.1144 45 1 7.4148 0.7916 -1.1612 46 1 1.6672 -2.1273 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178145745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:53 Heat of formation + Delta-G solvation = 2.056621 kcal Electronic energy + Delta-G solvation = -26348.669769 eV Core-core repulsion = 22816.869372 eV Total energy + Delta-G solvation = -3531.800398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.87948 -39.49422 -37.30814 -36.05431 -33.78519 -33.42488 -32.03249 -31.51840 -29.66603 -27.95452 -27.21554 -24.56445 -23.70503 -22.43776 -22.30179 -21.61836 -21.32791 -19.69159 -19.26559 -17.73226 -16.61917 -16.21252 -15.81123 -15.65275 -15.20733 -14.66785 -14.55835 -14.42193 -14.24547 -13.83080 -13.36598 -13.14740 -12.97782 -12.84371 -12.74037 -12.68358 -12.24958 -12.05950 -11.84365 -11.75194 -11.58127 -11.01131 -10.86012 -10.82759 -10.71211 -10.54352 -10.16802 -9.98348 -9.95438 -9.75596 -9.59473 -9.55721 -9.02165 -8.91459 -8.77674 -8.46821 -8.29280 -6.10438 -4.00814 0.85307 1.09654 2.69503 3.26334 3.35568 3.38395 3.42785 3.50468 3.82348 3.97722 4.38671 4.48134 4.56994 4.67161 4.74772 4.81651 4.86757 5.00955 5.16902 5.18430 5.28853 5.35315 5.51000 5.54728 5.60010 5.69525 5.77413 5.77919 5.90435 5.95596 6.03935 6.05796 6.21752 6.48391 6.49115 6.50442 6.73218 6.78760 6.89464 6.97459 7.09053 7.25705 7.44039 7.65117 7.72177 7.77352 7.80336 7.96526 8.38505 8.56434 8.96284 9.54726 10.99216 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.003937 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.101551 B = 7110.856907 C = 8125.863586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.139 4.139 3 C -0.075 4.075 4 C -0.147 4.147 5 C 0.159 3.841 6 C -0.121 4.121 7 C 0.553 3.447 8 O -0.540 6.540 9 N -0.714 5.714 10 C 0.153 3.847 11 H 0.080 0.920 12 C -0.112 4.112 13 C -0.013 4.013 14 C -0.488 4.488 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.266 1.266 21 C 0.014 3.986 22 C -0.114 4.114 23 C -0.130 4.130 24 C -0.135 4.135 25 N -0.470 5.470 26 C 0.100 3.900 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.395 0.605 33 H 0.035 0.965 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.020 0.980 37 H 0.264 0.736 38 H 0.060 0.940 39 H 0.006 0.994 40 H 0.053 0.947 41 H 0.036 0.964 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 -1.365 -20.068 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C -0.101 4.101 4 C -0.167 4.167 5 C 0.021 3.979 6 C -0.125 4.125 7 C 0.337 3.663 8 O -0.417 6.417 9 N -0.363 5.363 10 C 0.051 3.949 11 H 0.098 0.902 12 C -0.151 4.151 13 C -0.051 4.051 14 C -0.507 4.507 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.716 3.284 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.191 1.191 21 C -0.024 4.024 22 C -0.152 4.152 23 C -0.168 4.168 24 C -0.172 4.172 25 N -0.178 5.178 26 C -0.058 4.058 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.229 0.771 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.133 0.867 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.920 -1.728 -19.815 21.409 hybrid contribution -1.379 1.474 0.418 2.061 sum -9.299 -0.254 -19.397 21.512 Atomic orbital electron populations 1.20726 0.90151 1.03007 1.02838 1.20964 0.97671 0.94278 1.01166 1.21484 0.93756 0.98354 0.96477 1.21917 0.95086 0.99169 1.00555 1.19890 0.92917 0.88676 0.96401 1.20024 0.89320 1.10446 0.92714 1.19085 0.83936 0.79375 0.83860 1.90688 1.24593 1.39525 1.86940 1.46329 1.33249 1.50386 1.06294 1.21092 0.98090 0.95707 0.80057 0.90219 1.21906 0.99919 0.94921 0.98339 1.19721 0.96070 0.96394 0.92914 1.20047 1.41942 0.92651 0.96077 1.24832 0.95018 0.96948 0.95838 1.69833 1.45535 1.31791 1.05636 0.86664 0.79059 0.85508 0.77178 1.20507 1.21605 1.19142 1.19330 0.94290 0.97018 0.91780 1.21922 1.01103 0.94832 0.97344 1.22953 1.01806 0.92027 1.00019 1.23070 1.02117 0.97885 0.94170 1.67401 1.08103 1.30784 1.11462 1.22645 0.89450 0.97557 0.96111 0.90661 0.91382 0.91159 0.84711 0.84684 0.77148 0.94654 0.93188 0.95100 0.96168 0.92605 0.92104 0.97515 0.92873 0.94553 0.87892 0.87474 0.88170 0.86732 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.04 36.00 0.36 -0.34 16 2 C -0.14 -1.29 5.90 -104.48 -0.62 -1.90 16 3 C -0.07 -0.74 9.86 -39.27 -0.39 -1.13 16 4 C -0.15 -1.73 9.78 -39.44 -0.39 -2.11 16 5 C 0.16 2.03 5.27 -82.59 -0.44 1.59 16 6 C -0.12 -1.63 2.18 -156.82 -0.34 -1.97 16 7 C 0.55 9.54 7.29 -10.99 -0.08 9.46 16 8 O -0.54 -11.02 15.91 5.56 0.09 -10.93 16 9 N -0.71 -12.56 4.95 -53.85 -0.27 -12.83 16 10 C 0.15 3.14 2.38 -67.98 -0.16 2.98 16 11 H 0.08 1.79 7.52 -51.93 -0.39 1.40 16 12 C -0.11 -2.42 5.50 -26.63 -0.15 -2.57 16 13 C -0.01 -0.31 5.60 -27.47 -0.15 -0.47 16 14 C -0.49 -12.98 5.51 -98.92 -0.55 -13.53 16 15 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 16 N -0.89 -25.61 12.73 55.43 0.71 -24.90 16 17 Si 0.89 21.33 27.27 -169.99 -4.64 16.69 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.26 6.46 56.52 0.37 -5.90 16 21 C 0.01 0.34 5.97 -27.49 -0.16 0.18 16 22 C -0.11 -2.42 5.40 -26.64 -0.14 -2.56 16 23 C -0.13 -1.49 9.78 -26.73 -0.26 -1.75 16 24 C -0.13 -1.51 9.75 -26.73 -0.26 -1.77 16 25 N -0.47 -5.85 10.08 -9.47 -0.10 -5.94 16 26 C 0.10 1.03 10.86 -17.55 -0.19 0.84 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 29 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.40 6.45 8.14 -40.82 -0.33 6.12 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.03 0.74 4.78 -51.93 -0.25 0.49 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.06 1.65 7.07 -51.93 -0.37 1.28 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.11 1.11 8.13 -51.93 -0.42 0.69 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.11 1.37 7.68 -51.93 -0.40 0.97 16 46 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -30.89 373.42 -9.83 -40.72 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.25 Total: 4.62 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -4.01 Total: -13.06 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.34 Total: -43.67 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.64 Total: 16.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.89 -9.83 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178145745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.774 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds