Wall clock time and date at job start Tue Mar 31 2020 11:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38677 * 120.41621 * 2 1 4 4 C 1.38629 * 118.41777 * 179.70694 * 3 2 1 5 5 C 1.38231 * 119.16129 * 0.51294 * 4 3 2 6 6 C 1.50695 * 119.61842 * 179.75120 * 5 4 3 7 7 C 1.50696 * 115.54989 * 75.23361 * 6 5 4 8 8 O 1.21282 * 120.00307 * 220.28603 * 7 6 5 9 9 N 1.34777 * 120.00189 * 40.01668 * 7 6 5 10 10 C 1.46497 * 120.00522 * 184.39150 * 9 7 6 11 11 H 1.09006 * 109.41019 * 324.99807 * 10 9 7 12 12 C 1.52957 * 109.41340 * 84.85250 * 10 9 7 13 13 C 1.53243 * 109.39948 * 183.77895 * 12 10 9 14 14 C 1.51280 * 108.48168 * 305.26615 * 13 12 10 15 15 C 1.37876 * 120.84702 * 231.36582 * 14 13 12 16 16 N 1.31513 * 119.99373 * 180.02562 * 15 14 13 17 17 Si 1.86793 * 120.00365 * 0.02562 * 15 14 13 18 18 H 1.48500 * 109.47299 * 89.99864 * 17 15 14 19 19 H 1.48502 * 109.47108 * 210.00000 * 17 15 14 20 20 H 1.48499 * 109.47153 * 329.99848 * 17 15 14 21 21 C 1.51265 * 118.29449 * 51.38767 * 14 13 12 22 22 C 1.52959 * 109.41678 * 205.13895 * 10 9 7 23 23 C 1.53000 * 117.51727 * 220.93826 * 6 5 4 24 24 C 1.53001 * 60.00038 * 107.48017 * 23 6 5 25 25 N 1.31857 * 120.76110 * 359.47965 * 5 4 3 26 26 C 1.31886 * 121.72947 * 0.27339 * 25 5 4 27 27 H 1.08995 * 109.47444 * 270.02060 * 1 2 3 28 28 H 1.09003 * 109.47116 * 30.02130 * 1 2 3 29 29 H 1.09004 * 109.47238 * 150.01854 * 1 2 3 30 30 H 1.07995 * 120.79016 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.41975 * 180.28782 * 4 3 2 32 32 H 0.96999 * 119.99392 * 4.38512 * 9 7 6 33 33 H 1.09000 * 109.48637 * 303.68387 * 12 10 9 34 34 H 1.08999 * 109.48383 * 63.72863 * 12 10 9 35 35 H 1.09000 * 109.62368 * 185.59010 * 13 12 10 36 36 H 1.08997 * 109.68752 * 64.97876 * 13 12 10 37 37 H 0.97000 * 120.00027 * 179.97438 * 16 15 14 38 38 H 1.09006 * 109.62288 * 188.93318 * 21 14 13 39 39 H 1.09000 * 109.78620 * 68.46705 * 21 14 13 40 40 H 1.09005 * 109.47718 * 296.27429 * 22 10 9 41 41 H 1.08998 * 109.47954 * 56.29850 * 22 10 9 42 42 H 1.09006 * 117.49602 * 214.96840 * 23 6 5 43 43 H 1.08992 * 117.50166 * 359.97438 * 23 6 5 44 44 H 1.08996 * 117.49740 * 252.50588 * 24 23 6 45 45 H 1.09006 * 117.51735 * 107.48333 * 24 23 6 46 46 H 1.07997 * 119.61689 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0062 5 6 4.2256 -0.0822 0.0014 6 6 5.7312 -0.1468 0.0024 7 6 6.3942 0.1659 1.3190 8 8 7.4080 0.8310 1.3447 9 7 5.8577 -0.2891 2.4686 10 6 6.4465 0.0942 3.7541 11 1 7.5285 0.1732 3.6478 12 6 5.8786 1.4457 4.1906 13 6 6.5637 1.8910 5.4870 14 6 6.4093 0.7905 6.5135 15 6 5.9186 1.0624 7.7729 16 7 5.7918 0.0929 8.6525 17 14 5.4339 2.8075 8.2300 18 1 4.0037 3.0275 7.8962 19 1 5.6397 3.0130 9.6863 20 1 6.2730 3.7692 7.4709 21 6 6.8076 -0.6154 6.1227 22 6 6.1150 -0.9690 4.8026 23 6 6.3943 -1.1972 -0.8907 24 6 6.4575 0.2827 -1.2739 25 7 3.5254 -1.1996 0.0013 26 6 2.2066 -1.1916 0.0004 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5136 30 1 1.6889 2.1423 0.0004 31 1 4.1735 2.0592 0.0111 32 1 5.0815 -0.8704 2.4448 33 1 6.0613 2.1857 3.4114 34 1 4.8057 1.3520 4.3588 35 1 6.0938 2.8032 5.8547 36 1 7.6223 2.0710 5.2997 37 1 5.4469 0.2841 9.5387 38 1 6.4945 -1.3137 6.8990 39 1 7.8887 -0.6707 5.9953 40 1 5.0363 -1.0043 4.9559 41 1 6.4651 -1.9417 4.4571 42 1 7.3102 -1.6622 -0.5259 43 1 5.7416 -1.8422 -1.4789 44 1 5.8464 0.6114 -2.1144 45 1 7.4148 0.7916 -1.1612 46 1 1.6672 -2.1273 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178145745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:52 Heat of formation + Delta-G solvation = -15.448490 kcal Electronic energy + Delta-G solvation = -26349.428848 eV Core-core repulsion = 22816.869372 eV Total energy + Delta-G solvation = -3532.559476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85461 -40.69493 -38.83011 -37.33662 -35.44139 -34.25013 -33.42841 -32.77583 -31.55432 -29.40648 -28.29489 -25.70248 -24.67208 -23.75198 -23.35240 -23.18793 -22.75390 -21.34561 -20.64876 -18.91647 -17.99349 -17.41230 -17.24480 -16.81382 -16.42817 -16.00442 -15.83523 -15.75447 -15.19273 -15.08005 -14.85570 -14.56742 -14.14522 -14.10809 -13.99685 -13.75279 -13.60543 -13.52772 -13.25213 -12.85172 -12.72771 -12.63198 -12.56961 -12.45611 -11.97777 -11.88680 -11.75285 -11.61012 -11.49282 -11.14375 -10.84152 -10.74036 -10.72552 -10.56590 -10.38913 -9.95789 -9.69636 -8.19711 -6.14264 0.05709 0.32147 1.35894 1.39723 1.42597 1.48826 2.10711 2.38934 2.63593 2.85183 3.07892 3.10558 3.64755 3.67712 3.86229 3.92415 3.94848 3.98808 4.08041 4.12620 4.22466 4.39493 4.42933 4.61470 4.64115 4.68008 4.75816 4.77476 4.85065 4.89340 4.90522 4.91158 5.01194 5.07862 5.15584 5.16089 5.17617 5.18241 5.21286 5.35845 5.49797 5.52789 5.63004 5.71711 5.75992 5.77098 6.31577 6.52137 6.90536 6.99201 7.18130 7.43927 8.91128 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.003937 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.101551 B = 7110.856907 C = 8125.863586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.134 4.134 3 C -0.080 4.080 4 C -0.161 4.161 5 C 0.143 3.857 6 C -0.132 4.132 7 C 0.552 3.448 8 O -0.576 6.576 9 N -0.708 5.708 10 C 0.165 3.835 11 H 0.060 0.940 12 C -0.103 4.103 13 C -0.014 4.014 14 C -0.501 4.501 15 C 0.026 3.974 16 N -0.927 5.927 17 Si 0.940 3.060 18 H -0.271 1.271 19 H -0.289 1.289 20 H -0.258 1.258 21 C 0.011 3.989 22 C -0.100 4.100 23 C -0.119 4.119 24 C -0.122 4.122 25 N -0.487 5.487 26 C 0.089 3.911 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.133 0.867 32 H 0.404 0.596 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.034 0.966 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.034 0.966 39 H -0.002 1.002 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.105 0.895 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 -0.911 -22.086 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.181 4.181 5 C 0.006 3.994 6 C -0.136 4.136 7 C 0.339 3.661 8 O -0.456 6.456 9 N -0.357 5.357 10 C 0.061 3.939 11 H 0.078 0.922 12 C -0.141 4.141 13 C -0.052 4.052 14 C -0.520 4.520 15 C -0.172 4.172 16 N -0.567 5.567 17 Si 0.766 3.234 18 H -0.196 1.196 19 H -0.216 1.216 20 H -0.183 1.183 21 C -0.027 4.027 22 C -0.138 4.138 23 C -0.157 4.157 24 C -0.160 4.160 25 N -0.195 5.195 26 C -0.068 4.068 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.174 0.826 31 H 0.151 0.849 32 H 0.239 0.761 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.017 0.983 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.123 0.877 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.955 -1.280 -21.860 24.054 hybrid contribution -0.749 1.277 1.021 1.798 sum -10.704 -0.003 -20.840 23.428 Atomic orbital electron populations 1.20794 0.87909 1.04450 1.03382 1.21308 0.99253 0.93645 0.99348 1.21805 0.93193 0.99727 0.95791 1.22023 0.96085 0.98793 1.01182 1.19751 0.92293 0.89247 0.98105 1.19864 0.90143 1.12599 0.91005 1.19696 0.83333 0.78199 0.84853 1.90666 1.26276 1.41024 1.87627 1.46112 1.33440 1.50668 1.05476 1.20700 0.96994 0.94940 0.81291 0.92210 1.21764 0.99638 0.95600 0.97144 1.19716 0.96058 0.95864 0.93557 1.20560 1.41018 0.93809 0.96649 1.25564 0.95468 1.00274 0.95928 1.69954 1.47058 1.33641 1.06039 0.85818 0.79147 0.81579 0.76869 1.19642 1.21575 1.18270 1.19279 0.94075 0.96292 0.93088 1.21693 1.00466 0.96032 0.95650 1.23017 1.01484 0.92195 0.98963 1.23137 1.01600 0.97680 0.93564 1.67363 1.09212 1.30840 1.12116 1.23123 0.88974 0.99056 0.95679 0.90371 0.90156 0.89623 0.82551 0.84910 0.76146 0.94106 0.92987 0.94733 0.96746 0.92649 0.94717 0.98328 0.92973 0.92657 0.88211 0.86090 0.85952 0.87704 0.80414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.04 71.24 0.72 -0.29 16 2 C -0.13 -2.10 5.90 -19.77 -0.12 -2.22 16 3 C -0.08 -1.38 9.86 22.47 0.22 -1.16 16 4 C -0.16 -3.51 9.78 22.36 0.22 -3.29 16 5 C 0.14 3.43 5.27 42.55 0.22 3.66 16 6 C -0.13 -3.41 2.18 -53.68 -0.12 -3.53 16 7 C 0.55 18.79 7.29 87.66 0.64 19.43 16 8 O -0.58 -23.57 15.91 -3.04 -0.05 -23.62 16 9 N -0.71 -24.42 4.95 -442.67 -2.19 -26.61 16 10 C 0.16 6.72 2.38 44.96 0.11 6.82 16 11 H 0.06 2.71 7.52 -2.38 -0.02 2.69 16 12 C -0.10 -4.37 5.50 30.66 0.17 -4.20 16 13 C -0.01 -0.66 5.60 30.11 0.17 -0.49 16 14 C -0.50 -26.86 5.51 -16.17 -0.09 -26.95 16 15 C 0.03 1.46 5.46 84.65 0.46 1.92 16 16 N -0.93 -54.33 12.73 21.45 0.27 -54.06 16 17 Si 0.94 43.57 27.27 68.60 1.87 45.44 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.26 -11.51 6.46 99.48 0.64 -10.87 16 21 C 0.01 0.54 5.97 30.10 0.18 0.72 16 22 C -0.10 -4.24 5.40 30.65 0.17 -4.08 16 23 C -0.12 -2.53 9.78 30.59 0.30 -2.24 16 24 C -0.12 -2.57 9.75 30.59 0.30 -2.28 16 25 N -0.49 -11.21 10.08 -183.89 -1.85 -13.06 16 26 C 0.09 1.61 10.86 84.67 0.92 2.53 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.57 8.10 -2.39 -0.02 0.55 16 29 H 0.08 0.55 8.09 -2.38 -0.02 0.53 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.40 12.73 8.14 -92.71 -0.76 11.97 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 35 H 0.03 1.61 4.78 -2.39 -0.01 1.59 16 36 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.03 1.93 7.07 -2.38 -0.02 1.91 16 39 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 41 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.12 2.25 8.13 -2.39 -0.02 2.23 16 44 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.10 2.44 7.68 -2.38 -0.02 2.42 16 46 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -66.83 373.42 2.68 -64.15 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.16 Total: 23.40 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 4.47 Total: -15.64 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -3.77 Total: -93.73 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.87 Total: 45.44 kcal Total: -66.83 2.68 -64.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178145745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.697 kcal (2) G-P(sol) polarization free energy of solvation -66.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds