Wall clock time and date at job start Tue Mar 31 2020 11:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38676 * 120.42065 * 2 1 4 4 C 1.38627 * 118.41964 * 180.24664 * 3 2 1 5 5 C 1.38228 * 119.16275 * 359.74349 * 4 3 2 6 6 N 1.31858 * 120.76166 * 0.02562 * 5 4 3 7 7 C 1.31881 * 121.72586 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.61578 * 179.97438 * 7 6 5 9 9 C 1.50707 * 115.54918 * 249.17736 * 8 7 6 10 10 O 1.21283 * 119.99856 * 235.44130 * 9 8 7 11 11 N 1.34772 * 119.99914 * 55.44451 * 9 8 7 12 12 C 1.46496 * 120.00037 * 175.00775 * 11 9 8 13 13 H 1.09003 * 109.41345 * 324.85535 * 12 11 9 14 14 C 1.52955 * 109.41591 * 84.64209 * 12 11 9 15 15 C 1.53228 * 109.40579 * 183.70493 * 14 12 11 16 16 C 1.51269 * 108.53864 * 305.37372 * 15 14 12 17 17 C 1.37872 * 120.85421 * 231.32561 * 16 15 14 18 18 N 1.31524 * 119.99971 * 10.46232 * 17 16 15 19 19 Si 1.86799 * 120.00356 * 190.46311 * 17 16 15 20 20 H 1.48493 * 109.47059 * 6.65501 * 19 17 16 21 21 H 1.48500 * 109.47152 * 126.65825 * 19 17 16 22 22 H 1.48503 * 109.46945 * 246.65516 * 19 17 16 23 23 C 1.51268 * 118.29879 * 51.34595 * 16 15 14 24 24 C 1.52959 * 109.41765 * 205.00208 * 12 11 9 25 25 C 1.53003 * 117.49922 * 34.84423 * 8 7 6 26 26 C 1.52997 * 117.50122 * 103.50768 * 8 7 6 27 27 H 1.09002 * 109.46962 * 264.66064 * 1 2 3 28 28 H 1.09002 * 109.47079 * 24.65582 * 1 2 3 29 29 H 1.08999 * 109.47318 * 144.65282 * 1 2 3 30 30 H 1.08002 * 120.78698 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.41821 * 179.73212 * 4 3 2 32 32 H 1.08003 * 119.61722 * 179.97438 * 5 4 3 33 33 H 0.97000 * 119.99974 * 355.00829 * 11 9 8 34 34 H 1.09000 * 109.48471 * 303.68615 * 14 12 11 35 35 H 1.09004 * 109.47824 * 63.72942 * 14 12 11 36 36 H 1.09004 * 109.62809 * 65.09344 * 15 14 12 37 37 H 1.09005 * 109.62365 * 185.47059 * 15 14 12 38 38 H 0.96999 * 120.00406 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.62969 * 188.93645 * 23 16 15 40 40 H 1.09007 * 109.62433 * 68.36881 * 23 16 15 41 41 H 1.08997 * 109.48307 * 56.31019 * 24 12 11 42 42 H 1.09006 * 109.47681 * 296.27202 * 24 12 11 43 43 H 1.08997 * 117.49731 * 215.00248 * 25 8 7 44 44 H 1.09000 * 117.49860 * 0.02965 * 25 8 7 45 45 H 1.09003 * 117.49779 * 359.97383 * 26 8 7 46 46 H 1.08995 * 117.50246 * 144.97651 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1475 -0.0052 5 6 4.2256 -0.0824 -0.0049 6 7 3.5254 -1.1997 -0.0001 7 6 2.2066 -1.1916 0.0050 8 6 1.4539 -2.4971 0.0097 9 6 0.7056 -2.8206 -1.2579 10 8 -0.4831 -3.0574 -1.2167 11 7 1.3575 -2.8467 -2.4372 12 6 0.6561 -3.2672 -3.6526 13 1 -0.0585 -4.0522 -3.4053 14 6 -0.0897 -2.0721 -4.2486 15 6 -0.8974 -2.5321 -5.4667 16 6 0.0392 -3.2260 -6.4308 17 6 0.0812 -2.8636 -7.7603 18 7 -0.5393 -1.7771 -8.1657 19 14 1.0194 -3.9156 -8.9861 20 1 1.4882 -5.1557 -8.3172 21 1 0.1269 -4.2710 -10.1185 22 1 2.1888 -3.1563 -9.4970 23 6 0.9283 -4.3282 -5.8988 24 6 1.6698 -3.8032 -4.6650 25 6 2.0690 -3.6644 0.7844 26 6 0.8315 -2.9490 1.3323 27 1 -0.3633 -0.0956 1.0232 28 1 -0.3633 0.9340 -0.4287 29 1 -0.3634 -0.8382 -0.5945 30 1 1.6890 2.1423 0.0004 31 1 4.1736 2.0592 -0.0098 32 1 5.3046 -0.1287 -0.0094 33 1 2.2911 -2.5871 -2.4812 34 1 -0.7647 -1.6553 -3.5011 35 1 0.6285 -1.3114 -4.5548 36 1 -1.6759 -3.2258 -5.1492 37 1 -1.3524 -1.6683 -5.9517 38 1 -0.5100 -1.5222 -9.1011 39 1 1.6491 -4.6183 -6.6633 40 1 0.3188 -5.1883 -5.6212 41 1 2.2418 -4.6132 -4.2126 42 1 2.3463 -3.0015 -4.9613 43 1 1.9323 -4.6662 0.3773 44 1 3.0178 -3.4879 1.2910 45 1 0.9668 -2.3022 2.1991 46 1 -0.1193 -3.4799 1.2857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178208460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:57 Heat of formation + Delta-G solvation = 6.304230 kcal Electronic energy + Delta-G solvation = -26731.558448 eV Core-core repulsion = 23199.942241 eV Total energy + Delta-G solvation = -3531.616208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97642 -39.42348 -37.23712 -36.00476 -33.74428 -33.63888 -31.79224 -31.48194 -29.61150 -27.63671 -27.32485 -25.12208 -23.13327 -22.55717 -22.07056 -21.69852 -21.31444 -19.71297 -19.22806 -17.66337 -16.56248 -16.29967 -15.94957 -15.69497 -15.31958 -14.63433 -14.43109 -14.36460 -13.90607 -13.89149 -13.27222 -13.17103 -12.85994 -12.83574 -12.72188 -12.45541 -12.21124 -12.00780 -11.77827 -11.67025 -11.50309 -10.99943 -10.85378 -10.82860 -10.76329 -10.59362 -10.20477 -9.91864 -9.87811 -9.65107 -9.55682 -9.46383 -9.06516 -8.92232 -8.75092 -8.42248 -8.25030 -6.10502 -3.98836 0.89927 1.11418 2.74240 3.25079 3.35517 3.36703 3.39716 3.49891 3.82776 4.04113 4.38442 4.49237 4.65652 4.73809 4.81831 4.87002 4.89349 5.05848 5.16437 5.25409 5.39507 5.52726 5.57230 5.59354 5.65702 5.76293 5.78915 5.91336 5.95235 6.05221 6.09352 6.16998 6.18973 6.50465 6.53967 6.55445 6.74178 6.80244 6.84448 7.06436 7.12321 7.26341 7.40629 7.66579 7.76710 7.81594 7.85464 7.94635 8.40872 8.55740 8.98095 9.55029 10.99039 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.003706 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.987704 B = 7553.782573 C = 7896.608914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C -0.078 4.078 4 C -0.169 4.169 5 C 0.091 3.909 6 N -0.471 5.471 7 C 0.161 3.839 8 C -0.117 4.117 9 C 0.554 3.446 10 O -0.535 6.535 11 N -0.714 5.714 12 C 0.155 3.845 13 H 0.077 0.923 14 C -0.111 4.111 15 C 0.012 3.988 16 C -0.490 4.490 17 C 0.077 3.923 18 N -0.886 5.886 19 Si 0.881 3.119 20 H -0.260 1.260 21 H -0.286 1.286 22 H -0.283 1.283 23 C -0.015 4.015 24 C -0.112 4.112 25 C -0.135 4.135 26 C -0.135 4.135 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.395 0.605 34 H 0.034 0.966 35 H 0.047 0.953 36 H 0.005 0.995 37 H 0.057 0.943 38 H 0.263 0.737 39 H 0.038 0.962 40 H 0.017 0.983 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.297 3.777 18.660 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.114 4.114 3 C -0.104 4.104 4 C -0.189 4.189 5 C -0.066 4.066 6 N -0.179 5.179 7 C 0.024 3.976 8 C -0.121 4.121 9 C 0.338 3.662 10 O -0.413 6.413 11 N -0.363 5.363 12 C 0.052 3.948 13 H 0.095 0.905 14 C -0.150 4.150 15 C -0.026 4.026 16 C -0.509 4.509 17 C -0.125 4.125 18 N -0.523 5.523 19 Si 0.709 3.291 20 H -0.184 1.184 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.053 4.053 24 C -0.151 4.151 25 C -0.173 4.173 26 C -0.172 4.172 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.228 0.772 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.127 0.873 45 H 0.117 0.883 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.844 2.903 18.490 20.294 hybrid contribution 0.737 0.781 -0.859 1.376 sum 8.582 3.685 17.631 19.952 Atomic orbital electron populations 1.20904 0.89757 1.04136 1.03019 1.20751 0.98012 0.93166 0.99516 1.21528 0.94173 0.98065 0.96628 1.22153 0.95248 0.99707 1.01748 1.22698 1.00190 0.87494 0.96249 1.67370 1.07328 1.31633 1.11525 1.19769 0.89090 0.91902 0.96883 1.19955 1.04041 0.94192 0.93899 1.19064 0.86733 0.76974 0.83453 1.90702 1.14351 1.49737 1.86486 1.46350 1.14957 1.67024 1.07921 1.21091 0.94235 0.97687 0.81760 0.90490 1.21924 0.98660 0.96136 0.98316 1.19351 0.94292 0.97467 0.91453 1.20032 1.21012 1.16579 0.93316 1.24838 0.95412 0.94496 0.97792 1.69885 1.43705 1.22526 1.16226 0.86753 0.79728 0.81610 0.81043 1.18448 1.21192 1.20962 1.19779 0.95739 0.96445 0.93312 1.21852 0.97230 0.99006 0.97009 1.23000 0.98051 0.95234 1.00980 1.23056 0.98590 1.02298 0.93300 0.90735 0.91379 0.89635 0.84702 0.84760 0.82641 0.77186 0.94717 0.93376 0.97697 0.92436 0.92683 0.94334 0.96441 0.94372 0.92604 0.88012 0.87336 0.88263 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.44 36.01 0.34 -1.13 16 2 C -0.11 -1.39 5.88 -104.48 -0.61 -2.00 16 3 C -0.08 -0.80 9.84 -39.28 -0.39 -1.19 16 4 C -0.17 -1.55 10.11 -39.44 -0.40 -1.95 16 5 C 0.09 0.93 11.18 -17.54 -0.20 0.73 16 6 N -0.47 -5.90 9.88 -9.47 -0.09 -5.99 16 7 C 0.16 2.11 5.78 -82.59 -0.48 1.63 16 8 C -0.12 -1.56 1.37 -156.81 -0.21 -1.78 16 9 C 0.55 9.34 5.67 -10.98 -0.06 9.27 16 10 O -0.54 -10.64 15.19 5.55 0.08 -10.55 16 11 N -0.71 -12.33 5.05 -53.85 -0.27 -12.61 16 12 C 0.15 3.13 2.31 -67.98 -0.16 2.97 16 13 H 0.08 1.69 7.66 -51.93 -0.40 1.29 16 14 C -0.11 -2.52 5.50 -26.64 -0.15 -2.67 16 15 C 0.01 0.32 5.98 -27.49 -0.16 0.15 16 16 C -0.49 -12.96 5.48 -98.93 -0.54 -13.50 16 17 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 18 N -0.89 -25.57 12.77 55.43 0.71 -24.86 16 19 Si 0.88 20.78 27.70 -169.99 -4.71 16.07 16 20 H -0.26 -5.86 5.95 56.52 0.34 -5.53 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.01 -0.34 5.52 -27.49 -0.15 -0.49 16 24 C -0.11 -2.26 5.40 -26.64 -0.14 -2.41 16 25 C -0.14 -1.53 9.74 -26.69 -0.26 -1.79 16 26 C -0.13 -1.52 9.65 -26.69 -0.26 -1.77 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 29 H 0.08 1.29 5.08 -51.93 -0.26 1.03 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.39 6.27 8.49 -40.82 -0.35 5.93 16 34 H 0.03 0.78 8.04 -51.93 -0.42 0.36 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.06 1.61 7.08 -51.93 -0.37 1.25 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.04 0.88 4.74 -51.93 -0.25 0.63 16 40 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.11 1.14 8.00 -51.93 -0.42 0.72 16 45 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.11 1.33 7.83 -51.93 -0.41 0.92 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -30.63 367.65 -9.80 -40.44 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.13 Total: 5.85 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.93 Total: -13.89 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.34 Total: -43.45 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.71 Total: 16.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.63 -9.80 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178208460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.742 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds