Wall clock time and date at job start Tue Mar 31 2020 11:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38676 * 120.42065 * 2 1 4 4 C 1.38627 * 118.41964 * 180.24664 * 3 2 1 5 5 C 1.38228 * 119.16275 * 359.74349 * 4 3 2 6 6 N 1.31858 * 120.76166 * 0.02562 * 5 4 3 7 7 C 1.31881 * 121.72586 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.61578 * 179.97438 * 7 6 5 9 9 C 1.50707 * 115.54918 * 249.17736 * 8 7 6 10 10 O 1.21283 * 119.99856 * 235.44130 * 9 8 7 11 11 N 1.34772 * 119.99914 * 55.44451 * 9 8 7 12 12 C 1.46496 * 120.00037 * 175.00775 * 11 9 8 13 13 H 1.09003 * 109.41345 * 324.85535 * 12 11 9 14 14 C 1.52955 * 109.41591 * 84.64209 * 12 11 9 15 15 C 1.53228 * 109.40579 * 183.70493 * 14 12 11 16 16 C 1.51269 * 108.53864 * 305.37372 * 15 14 12 17 17 C 1.37872 * 120.85421 * 231.32561 * 16 15 14 18 18 N 1.31524 * 119.99971 * 10.46232 * 17 16 15 19 19 Si 1.86799 * 120.00356 * 190.46311 * 17 16 15 20 20 H 1.48493 * 109.47059 * 6.65501 * 19 17 16 21 21 H 1.48500 * 109.47152 * 126.65825 * 19 17 16 22 22 H 1.48503 * 109.46945 * 246.65516 * 19 17 16 23 23 C 1.51268 * 118.29879 * 51.34595 * 16 15 14 24 24 C 1.52959 * 109.41765 * 205.00208 * 12 11 9 25 25 C 1.53003 * 117.49922 * 34.84423 * 8 7 6 26 26 C 1.52997 * 117.50122 * 103.50768 * 8 7 6 27 27 H 1.09002 * 109.46962 * 264.66064 * 1 2 3 28 28 H 1.09002 * 109.47079 * 24.65582 * 1 2 3 29 29 H 1.08999 * 109.47318 * 144.65282 * 1 2 3 30 30 H 1.08002 * 120.78698 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.41821 * 179.73212 * 4 3 2 32 32 H 1.08003 * 119.61722 * 179.97438 * 5 4 3 33 33 H 0.97000 * 119.99974 * 355.00829 * 11 9 8 34 34 H 1.09000 * 109.48471 * 303.68615 * 14 12 11 35 35 H 1.09004 * 109.47824 * 63.72942 * 14 12 11 36 36 H 1.09004 * 109.62809 * 65.09344 * 15 14 12 37 37 H 1.09005 * 109.62365 * 185.47059 * 15 14 12 38 38 H 0.96999 * 120.00406 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.62969 * 188.93645 * 23 16 15 40 40 H 1.09007 * 109.62433 * 68.36881 * 23 16 15 41 41 H 1.08997 * 109.48307 * 56.31019 * 24 12 11 42 42 H 1.09006 * 109.47681 * 296.27202 * 24 12 11 43 43 H 1.08997 * 117.49731 * 215.00248 * 25 8 7 44 44 H 1.09000 * 117.49860 * 0.02965 * 25 8 7 45 45 H 1.09003 * 117.49779 * 359.97383 * 26 8 7 46 46 H 1.08995 * 117.50246 * 144.97651 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1475 -0.0052 5 6 4.2256 -0.0824 -0.0049 6 7 3.5254 -1.1997 -0.0001 7 6 2.2066 -1.1916 0.0050 8 6 1.4539 -2.4971 0.0097 9 6 0.7056 -2.8206 -1.2579 10 8 -0.4831 -3.0574 -1.2167 11 7 1.3575 -2.8467 -2.4372 12 6 0.6561 -3.2672 -3.6526 13 1 -0.0585 -4.0522 -3.4053 14 6 -0.0897 -2.0721 -4.2486 15 6 -0.8974 -2.5321 -5.4667 16 6 0.0392 -3.2260 -6.4308 17 6 0.0812 -2.8636 -7.7603 18 7 -0.5393 -1.7771 -8.1657 19 14 1.0194 -3.9156 -8.9861 20 1 1.4882 -5.1557 -8.3172 21 1 0.1269 -4.2710 -10.1185 22 1 2.1888 -3.1563 -9.4970 23 6 0.9283 -4.3282 -5.8988 24 6 1.6698 -3.8032 -4.6650 25 6 2.0690 -3.6644 0.7844 26 6 0.8315 -2.9490 1.3323 27 1 -0.3633 -0.0956 1.0232 28 1 -0.3633 0.9340 -0.4287 29 1 -0.3634 -0.8382 -0.5945 30 1 1.6890 2.1423 0.0004 31 1 4.1736 2.0592 -0.0098 32 1 5.3046 -0.1287 -0.0094 33 1 2.2911 -2.5871 -2.4812 34 1 -0.7647 -1.6553 -3.5011 35 1 0.6285 -1.3114 -4.5548 36 1 -1.6759 -3.2258 -5.1492 37 1 -1.3524 -1.6683 -5.9517 38 1 -0.5100 -1.5222 -9.1011 39 1 1.6491 -4.6183 -6.6633 40 1 0.3188 -5.1883 -5.6212 41 1 2.2418 -4.6132 -4.2126 42 1 2.3463 -3.0015 -4.9613 43 1 1.9323 -4.6662 0.3773 44 1 3.0178 -3.4879 1.2910 45 1 0.9668 -2.3022 2.1991 46 1 -0.1193 -3.4799 1.2857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178208460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:56 Heat of formation + Delta-G solvation = -11.500455 kcal Electronic energy + Delta-G solvation = -26732.330517 eV Core-core repulsion = 23199.942241 eV Total energy + Delta-G solvation = -3532.388277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96323 -40.62740 -38.76043 -37.25749 -35.40259 -34.55725 -33.40674 -32.52528 -31.51078 -29.35339 -28.27611 -26.21581 -24.40708 -23.58480 -23.48180 -22.99456 -22.80108 -21.36391 -20.60114 -18.81118 -18.03348 -17.42657 -17.20644 -16.98372 -16.36072 -16.27248 -15.81728 -15.48353 -15.11707 -14.99261 -14.92540 -14.59351 -14.14404 -14.00736 -13.93009 -13.79842 -13.66793 -13.51043 -13.33906 -12.83995 -12.73767 -12.68231 -12.54655 -12.42218 -11.94367 -11.85355 -11.71346 -11.62289 -11.33519 -11.12041 -10.85428 -10.75495 -10.61398 -10.47867 -10.38090 -9.94530 -9.70777 -8.18240 -6.11351 0.08549 0.32165 1.39054 1.43900 1.47985 1.53546 2.10141 2.41583 2.62634 2.88004 3.09001 3.15069 3.65553 3.67194 3.87104 3.89403 3.95486 3.99011 4.13165 4.17985 4.23627 4.43996 4.49316 4.56398 4.66437 4.67892 4.68762 4.75779 4.81055 4.83097 4.92046 4.96362 5.00157 5.10342 5.14622 5.18200 5.18600 5.22821 5.23832 5.34259 5.51941 5.54352 5.65121 5.71853 5.77127 5.80178 6.32700 6.54839 6.92739 7.00747 7.20905 7.45434 8.93310 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.003706 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.987704 B = 7553.782573 C = 7896.608914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 C -0.084 4.084 4 C -0.161 4.161 5 C 0.084 3.916 6 N -0.487 5.487 7 C 0.145 3.855 8 C -0.127 4.127 9 C 0.555 3.445 10 O -0.571 6.571 11 N -0.709 5.709 12 C 0.168 3.832 13 H 0.060 0.940 14 C -0.097 4.097 15 C 0.010 3.990 16 C -0.503 4.503 17 C 0.022 3.978 18 N -0.930 5.930 19 Si 0.941 3.059 20 H -0.239 1.239 21 H -0.289 1.289 22 H -0.280 1.280 23 C -0.017 4.017 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.126 4.126 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.156 0.844 31 H 0.168 0.832 32 H 0.184 0.816 33 H 0.405 0.595 34 H 0.027 0.973 35 H 0.039 0.961 36 H -0.006 1.006 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.047 0.953 40 H 0.020 0.980 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.257 3.600 20.119 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.134 4.134 3 C -0.109 4.109 4 C -0.180 4.180 5 C -0.074 4.074 6 N -0.195 5.195 7 C 0.008 3.992 8 C -0.131 4.131 9 C 0.341 3.659 10 O -0.451 6.451 11 N -0.358 5.358 12 C 0.064 3.936 13 H 0.078 0.922 14 C -0.136 4.136 15 C -0.028 4.028 16 C -0.522 4.522 17 C -0.177 4.177 18 N -0.570 5.570 19 Si 0.767 3.233 20 H -0.162 1.162 21 H -0.216 1.216 22 H -0.206 1.206 23 C -0.055 4.055 24 C -0.142 4.142 25 C -0.158 4.158 26 C -0.163 4.163 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.173 0.827 31 H 0.185 0.815 32 H 0.201 0.799 33 H 0.240 0.760 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.012 0.988 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.829 2.713 19.980 22.887 hybrid contribution -0.233 0.929 -1.251 1.575 sum 10.595 3.642 18.729 21.824 Atomic orbital electron populations 1.20825 0.90321 1.02982 1.03245 1.20866 0.97872 0.94006 1.00683 1.21855 0.94979 0.98171 0.95936 1.22535 0.94947 1.00749 0.99753 1.23274 1.01519 0.87312 0.95255 1.67353 1.07036 1.32933 1.12195 1.19670 0.89523 0.91590 0.98421 1.19771 1.05105 0.95689 0.92505 1.19643 0.86405 0.75564 0.84276 1.90680 1.16126 1.51145 1.87119 1.46134 1.15208 1.67221 1.07211 1.20690 0.94139 0.95774 0.83036 0.92204 1.21702 0.98084 0.96986 0.96805 1.19291 0.94631 0.96032 0.92820 1.20581 1.21012 1.17121 0.93503 1.25688 0.96671 0.95552 0.99745 1.70031 1.45911 1.24511 1.16528 0.85784 0.78333 0.80707 0.78504 1.16200 1.21598 1.20582 1.19802 0.95597 0.95374 0.94754 1.21725 0.96831 1.00022 0.95663 1.23070 0.98513 0.94450 0.99792 1.23112 0.98274 1.02107 0.92852 0.89446 0.90653 0.92993 0.82683 0.81481 0.79872 0.76045 0.95464 0.94254 0.98773 0.95772 0.92794 0.93486 0.96206 0.91095 0.92437 0.87948 0.86055 0.86422 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.44 71.24 0.67 -2.13 16 2 C -0.13 -3.09 5.88 -19.77 -0.12 -3.21 16 3 C -0.08 -1.52 9.84 22.47 0.22 -1.30 16 4 C -0.16 -2.40 10.11 22.36 0.23 -2.17 16 5 C 0.08 1.44 11.18 84.69 0.95 2.39 16 6 N -0.49 -11.07 9.88 -183.89 -1.82 -12.89 16 7 C 0.15 3.58 5.78 42.54 0.25 3.83 16 8 C -0.13 -3.28 1.37 -53.67 -0.07 -3.35 16 9 C 0.55 18.72 5.67 87.66 0.50 19.22 16 10 O -0.57 -23.31 15.19 -3.04 -0.05 -23.36 16 11 N -0.71 -24.10 5.05 -442.67 -2.23 -26.33 16 12 C 0.17 6.76 2.31 44.96 0.10 6.86 16 13 H 0.06 2.65 7.66 -2.39 -0.02 2.63 16 14 C -0.10 -4.51 5.50 30.66 0.17 -4.34 16 15 C 0.01 0.55 5.98 30.11 0.18 0.73 16 16 C -0.50 -26.87 5.48 -16.17 -0.09 -26.96 16 17 C 0.02 1.20 5.45 84.65 0.46 1.67 16 18 N -0.93 -55.37 12.77 21.45 0.27 -55.09 16 19 Si 0.94 42.45 27.70 68.60 1.90 44.35 16 20 H -0.24 -9.84 5.95 99.48 0.59 -9.25 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 C -0.02 -0.77 5.52 30.10 0.17 -0.61 16 24 C -0.10 -4.00 5.40 30.65 0.17 -3.83 16 25 C -0.12 -2.53 9.74 30.62 0.30 -2.23 16 26 C -0.13 -2.69 9.65 30.62 0.30 -2.40 16 27 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 29 H 0.05 1.61 5.08 -2.39 -0.01 1.60 16 30 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 31 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.40 12.32 8.49 -92.71 -0.79 11.53 16 34 H 0.03 1.27 8.04 -2.39 -0.02 1.25 16 35 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 36 H -0.01 -0.34 8.14 -2.38 -0.02 -0.35 16 37 H 0.02 1.42 7.08 -2.38 -0.02 1.40 16 38 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.05 2.02 4.74 -2.39 -0.01 2.01 16 40 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.12 2.24 8.00 -2.39 -0.02 2.22 16 45 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.10 2.42 7.83 -2.39 -0.02 2.40 16 Total: -1.00 -68.38 367.65 2.53 -65.85 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.09 Total: 25.31 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 4.37 Total: -17.83 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -3.78 Total: -94.32 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.90 Total: 44.35 kcal Total: -68.38 2.53 -65.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178208460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.350 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds