Wall clock time and date at job start Tue Mar 31 2020 11:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34243 * 126.49902 * 2 1 4 4 N 1.36829 * 109.92567 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.06077 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.47078 * 265.02564 * 5 4 3 7 7 C 1.50699 * 109.46862 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00337 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99628 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00206 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47647 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47248 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46588 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00650 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99431 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47161 * 59.99476 * 17 15 13 19 19 H 1.48498 * 109.46862 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46614 * 299.99368 * 17 15 13 21 21 C 1.37682 * 109.87722 * 359.97438 * 4 3 2 22 22 C 1.39125 * 133.50802 * 180.02562 * 21 4 3 23 23 C 1.37745 * 119.78036 * 179.97438 * 22 21 4 24 24 C 1.38826 * 120.66763 * 0.02562 * 23 22 21 25 25 C 1.36629 * 120.52953 * 359.97438 * 24 23 22 26 26 C 1.39636 * 119.75900 * 359.69787 * 25 24 23 27 27 H 1.09002 * 109.47152 * 90.02575 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.02675 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.02656 * 1 2 3 30 30 H 1.07991 * 125.03554 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47092 * 25.02484 * 5 4 3 32 32 H 1.09004 * 109.47331 * 145.02670 * 5 4 3 33 33 H 1.09005 * 109.46625 * 299.99425 * 6 5 4 34 34 H 1.08998 * 109.47158 * 59.99491 * 6 5 4 35 35 H 0.97003 * 119.99871 * 0.02562 * 9 7 6 36 36 H 1.09008 * 109.46924 * 300.00465 * 10 9 7 37 37 H 1.08998 * 109.47267 * 60.00203 * 10 9 7 38 38 H 1.08998 * 109.47079 * 300.00150 * 11 10 9 39 39 H 1.09004 * 109.46761 * 59.99980 * 11 10 9 40 40 H 1.08995 * 109.47097 * 299.99540 * 12 11 10 41 41 H 1.09001 * 109.46791 * 60.00103 * 12 11 10 42 42 H 0.97003 * 119.99758 * 180.02562 * 16 15 13 43 43 H 1.07999 * 120.10805 * 0.02562 * 22 21 4 44 44 H 1.08006 * 119.66446 * 179.97438 * 23 22 21 45 45 H 1.07999 * 119.74038 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.12030 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6888 -0.0006 5 6 4.7656 1.5981 -0.0013 6 6 5.2424 1.8164 -1.4387 7 6 6.4236 2.7522 -1.4394 8 8 6.8431 3.2002 -0.3934 9 7 7.0145 3.0906 -2.6025 10 6 8.1624 4.0008 -2.6034 11 6 8.6393 4.2190 -4.0408 12 6 9.8385 5.1691 -4.0415 13 6 10.3086 5.3834 -5.4572 14 1 9.8029 4.8909 -6.2746 15 6 11.3850 6.2075 -5.7089 16 7 12.0011 6.8068 -4.7136 17 14 11.9673 6.4738 -7.4638 18 1 10.8668 7.0658 -8.2660 19 1 13.1321 7.3949 -7.4644 20 1 12.3663 5.1716 -8.0558 21 6 3.6963 -0.6857 -0.0004 22 6 4.7589 -1.5838 -0.0003 23 6 4.5097 -2.9385 0.0004 24 6 3.2072 -3.4188 0.0005 25 6 2.1488 -2.5548 0.0005 26 6 2.3784 -1.1775 0.0067 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 0.8902 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.9635 2.1034 -0.0004 31 1 4.4727 2.5538 0.4334 32 1 5.5735 1.1635 0.5875 33 1 5.5354 0.8606 -1.8733 34 1 4.4346 2.2509 -2.0274 35 1 6.6792 2.7321 -3.4392 36 1 7.8685 4.9566 -2.1694 37 1 8.9703 3.5673 -2.0141 38 1 8.9330 3.2634 -4.4751 39 1 7.8311 4.6528 -4.6298 40 1 9.5452 6.1248 -3.6071 41 1 10.6464 4.7348 -3.4526 42 1 12.7582 7.3869 -4.8907 43 1 5.7757 -1.2199 0.0000 44 1 5.3360 -3.6340 0.0001 45 1 3.0290 -4.4840 0.0007 46 1 1.1382 -2.9357 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181212536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:46 Heat of formation + Delta-G solvation = -3.758824 kcal Electronic energy + Delta-G solvation = -24245.422595 eV Core-core repulsion = 20713.370021 eV Total energy + Delta-G solvation = -3532.052574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63755 -39.68185 -37.34328 -35.61135 -34.53842 -33.39217 -31.98340 -31.13515 -30.23243 -29.40258 -27.48197 -26.36352 -24.21739 -23.01327 -22.60047 -21.41991 -20.82057 -19.95188 -19.76244 -17.54446 -16.82666 -16.60639 -16.17751 -15.88199 -15.74661 -15.65265 -14.91349 -14.67622 -14.48411 -14.20618 -14.03788 -13.53524 -13.41272 -13.29360 -13.15530 -12.73584 -12.67975 -12.33854 -12.30670 -11.89971 -11.84035 -11.67425 -11.48192 -11.46165 -11.00195 -10.92149 -10.79851 -10.66683 -10.05774 -9.92933 -9.72196 -9.44674 -9.17908 -8.91161 -8.41004 -8.39901 -7.76755 -6.05619 -4.09070 0.91253 1.41478 2.40107 2.48343 2.59044 3.29281 3.32755 3.34386 3.37150 3.70505 4.37712 4.40522 4.42810 4.45824 4.51934 4.71904 4.82206 4.89386 4.99714 5.08243 5.10492 5.26840 5.30043 5.32026 5.44973 5.48306 5.52049 5.55678 5.63524 5.66595 5.69293 5.75776 5.96213 6.07852 6.27986 6.36395 6.40853 6.51952 6.54603 6.60012 6.73536 6.93190 7.01240 7.07507 7.54751 7.58175 7.70320 7.92405 8.20891 8.33630 8.97227 9.55253 11.05535 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.001848 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.545666 B =15151.793966 C =15475.079650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.178 4.178 3 C 0.053 3.947 4 N -0.481 5.481 5 C 0.127 3.873 6 C -0.160 4.160 7 C 0.512 3.488 8 O -0.546 6.546 9 N -0.723 5.723 10 C 0.115 3.885 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.099 3.901 22 C -0.128 4.128 23 C -0.101 4.101 24 C -0.149 4.149 25 C -0.072 4.072 26 C -0.105 4.105 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.167 0.833 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.716 -17.749 9.963 30.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.185 4.185 3 C -0.072 4.072 4 N -0.164 5.164 5 C 0.005 3.995 6 C -0.201 4.201 7 C 0.297 3.703 8 O -0.424 6.424 9 N -0.374 5.374 10 C -0.007 4.007 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.007 4.007 22 C -0.148 4.148 23 C -0.120 4.120 24 C -0.168 4.168 25 C -0.091 4.091 26 C -0.110 4.110 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.184 0.816 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.986 -17.030 10.763 29.820 hybrid contribution 0.409 0.140 -1.475 1.537 sum -21.577 -16.890 9.288 28.933 Atomic orbital electron populations 1.20069 0.89532 1.02056 1.01556 1.20268 0.95165 0.90799 1.12313 1.21639 0.81848 0.99249 1.04497 1.43989 1.05811 1.03981 1.62592 1.21483 0.87455 0.94286 0.96234 1.22046 0.97904 1.01023 0.99093 1.20295 0.84093 0.81713 0.84190 1.90726 1.65145 1.55169 1.31374 1.46229 1.33621 1.48896 1.08610 1.21684 0.86580 0.92538 0.99910 1.21897 1.00559 1.01225 0.92236 1.19026 0.91227 0.93718 0.97388 1.21157 1.14341 1.28059 0.92706 0.92692 1.25037 0.96548 0.95755 0.97131 1.69951 1.21762 1.30583 1.30917 0.86629 0.78234 0.78076 0.84885 1.20230 1.21238 1.20231 1.18273 0.95439 0.82957 1.03984 1.20088 0.96745 0.92250 1.05735 1.20810 0.96995 0.94149 1.00054 1.20613 0.92485 0.99413 1.04329 1.20232 0.98950 0.90902 0.98985 1.19104 0.91898 0.93210 1.06754 0.91988 0.91988 0.92003 0.81606 0.88202 0.88684 0.88359 0.88287 0.76653 0.91665 0.91654 0.92694 0.92699 0.96272 0.96270 0.92832 0.86301 0.85843 0.86211 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.41 36.01 0.37 -0.13 16 2 C -0.18 -1.67 6.32 -102.71 -0.65 -2.32 16 3 C 0.05 0.47 11.19 -16.73 -0.19 0.28 16 4 N -0.48 -4.72 2.78 -114.43 -0.32 -5.04 16 5 C 0.13 1.19 5.29 -4.04 -0.02 1.17 16 6 C -0.16 -1.45 6.02 -27.88 -0.17 -1.62 16 7 C 0.51 6.67 7.83 -10.99 -0.09 6.58 16 8 O -0.55 -9.21 15.98 5.56 0.09 -9.12 16 9 N -0.72 -9.52 5.56 -60.30 -0.33 -9.86 16 10 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 11 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.10 1.08 6.81 -83.99 -0.57 0.51 16 22 C -0.13 -1.27 10.00 -39.43 -0.39 -1.67 16 23 C -0.10 -0.89 10.01 -39.54 -0.40 -1.29 16 24 C -0.15 -1.28 9.97 -39.95 -0.40 -1.68 16 25 C -0.07 -0.67 10.05 -39.64 -0.40 -1.07 16 26 C -0.11 -1.12 6.35 -105.14 -0.67 -1.79 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 4.19 8.47 -40.82 -0.35 3.85 16 36 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -33.05 389.75 -10.74 -43.79 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.49 Total: 0.28 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -4.28 Total: -16.37 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.08 Total: -40.75 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.05 -10.74 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181212536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.035 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds