Wall clock time and date at job start Tue Mar 31 2020 11:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34243 * 126.49902 * 2 1 4 4 N 1.36829 * 109.92567 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.06077 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.47078 * 265.02564 * 5 4 3 7 7 C 1.50699 * 109.46862 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00337 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99628 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00206 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47647 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47248 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46588 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00650 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99431 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47161 * 59.99476 * 17 15 13 19 19 H 1.48498 * 109.46862 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46614 * 299.99368 * 17 15 13 21 21 C 1.37682 * 109.87722 * 359.97438 * 4 3 2 22 22 C 1.39125 * 133.50802 * 180.02562 * 21 4 3 23 23 C 1.37745 * 119.78036 * 179.97438 * 22 21 4 24 24 C 1.38826 * 120.66763 * 0.02562 * 23 22 21 25 25 C 1.36629 * 120.52953 * 359.97438 * 24 23 22 26 26 C 1.39636 * 119.75900 * 359.69787 * 25 24 23 27 27 H 1.09002 * 109.47152 * 90.02575 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.02675 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.02656 * 1 2 3 30 30 H 1.07991 * 125.03554 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47092 * 25.02484 * 5 4 3 32 32 H 1.09004 * 109.47331 * 145.02670 * 5 4 3 33 33 H 1.09005 * 109.46625 * 299.99425 * 6 5 4 34 34 H 1.08998 * 109.47158 * 59.99491 * 6 5 4 35 35 H 0.97003 * 119.99871 * 0.02562 * 9 7 6 36 36 H 1.09008 * 109.46924 * 300.00465 * 10 9 7 37 37 H 1.08998 * 109.47267 * 60.00203 * 10 9 7 38 38 H 1.08998 * 109.47079 * 300.00150 * 11 10 9 39 39 H 1.09004 * 109.46761 * 59.99980 * 11 10 9 40 40 H 1.08995 * 109.47097 * 299.99540 * 12 11 10 41 41 H 1.09001 * 109.46791 * 60.00103 * 12 11 10 42 42 H 0.97003 * 119.99758 * 180.02562 * 16 15 13 43 43 H 1.07999 * 120.10805 * 0.02562 * 22 21 4 44 44 H 1.08006 * 119.66446 * 179.97438 * 23 22 21 45 45 H 1.07999 * 119.74038 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.12030 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6888 -0.0006 5 6 4.7656 1.5981 -0.0013 6 6 5.2424 1.8164 -1.4387 7 6 6.4236 2.7522 -1.4394 8 8 6.8431 3.2002 -0.3934 9 7 7.0145 3.0906 -2.6025 10 6 8.1624 4.0008 -2.6034 11 6 8.6393 4.2190 -4.0408 12 6 9.8385 5.1691 -4.0415 13 6 10.3086 5.3834 -5.4572 14 1 9.8029 4.8909 -6.2746 15 6 11.3850 6.2075 -5.7089 16 7 12.0011 6.8068 -4.7136 17 14 11.9673 6.4738 -7.4638 18 1 10.8668 7.0658 -8.2660 19 1 13.1321 7.3949 -7.4644 20 1 12.3663 5.1716 -8.0558 21 6 3.6963 -0.6857 -0.0004 22 6 4.7589 -1.5838 -0.0003 23 6 4.5097 -2.9385 0.0004 24 6 3.2072 -3.4188 0.0005 25 6 2.1488 -2.5548 0.0005 26 6 2.3784 -1.1775 0.0067 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 0.8902 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.9635 2.1034 -0.0004 31 1 4.4727 2.5538 0.4334 32 1 5.5735 1.1635 0.5875 33 1 5.5354 0.8606 -1.8733 34 1 4.4346 2.2509 -2.0274 35 1 6.6792 2.7321 -3.4392 36 1 7.8685 4.9566 -2.1694 37 1 8.9703 3.5673 -2.0141 38 1 8.9330 3.2634 -4.4751 39 1 7.8311 4.6528 -4.6298 40 1 9.5452 6.1248 -3.6071 41 1 10.6464 4.7348 -3.4526 42 1 12.7582 7.3869 -4.8907 43 1 5.7757 -1.2199 0.0000 44 1 5.3360 -3.6340 0.0001 45 1 3.0290 -4.4840 0.0007 46 1 1.1382 -2.9357 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181212536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:45 Heat of formation + Delta-G solvation = -21.470402 kcal Electronic energy + Delta-G solvation = -24246.190627 eV Core-core repulsion = 20713.370021 eV Total energy + Delta-G solvation = -3532.820606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31760 -40.79929 -38.02225 -37.04892 -35.28960 -35.21433 -33.22746 -32.38518 -30.87845 -30.14428 -28.80752 -27.48181 -25.37414 -24.29560 -23.39276 -22.34433 -22.15249 -21.19312 -20.42020 -18.60050 -18.40862 -17.50377 -17.12888 -16.99040 -16.92895 -16.46433 -16.28415 -15.93699 -15.73597 -14.98722 -14.89238 -14.55295 -14.31019 -14.19982 -13.93671 -13.85765 -13.75953 -13.51918 -13.35829 -13.30958 -12.90032 -12.73021 -12.57494 -12.43106 -12.38887 -12.15569 -12.13491 -11.69459 -11.65327 -11.62353 -11.28357 -10.94948 -10.56254 -10.39959 -10.14867 -9.09536 -8.43549 -8.20833 -6.32479 0.23416 0.71815 1.40855 1.43701 1.51602 1.53478 1.67588 1.78274 2.30228 2.42299 3.00943 3.12764 3.60436 3.66981 3.74232 3.89003 3.95984 4.11434 4.17003 4.18439 4.28580 4.34786 4.38309 4.50649 4.52751 4.61857 4.68657 4.76805 4.90043 4.91906 4.92275 4.97266 4.98792 5.04758 5.14588 5.24243 5.34991 5.39326 5.50410 5.62357 5.68610 5.73994 5.82424 5.89370 5.94214 6.20396 6.34279 6.40214 6.49743 6.84831 7.17107 7.37128 8.90858 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.001848 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.545666 B =15151.793966 C =15475.079650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.191 4.191 3 C 0.045 3.955 4 N -0.483 5.483 5 C 0.131 3.869 6 C -0.142 4.142 7 C 0.514 3.486 8 O -0.587 6.587 9 N -0.714 5.714 10 C 0.129 3.871 11 C -0.102 4.102 12 C 0.023 3.977 13 C -0.543 4.543 14 H 0.066 0.934 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.266 1.266 21 C 0.077 3.923 22 C -0.144 4.144 23 C -0.106 4.106 24 C -0.153 4.153 25 C -0.082 4.082 26 C -0.129 4.129 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.191 0.809 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.416 0.584 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.068 0.932 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.122 0.878 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.428 -19.005 8.461 32.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.198 4.198 3 C -0.079 4.079 4 N -0.166 5.166 5 C 0.009 3.991 6 C -0.182 4.182 7 C 0.301 3.699 8 O -0.467 6.467 9 N -0.366 5.366 10 C 0.005 3.995 11 C -0.140 4.140 12 C -0.015 4.015 13 C -0.581 4.581 14 H 0.084 0.916 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.029 4.029 22 C -0.165 4.165 23 C -0.125 4.125 24 C -0.172 4.172 25 C -0.101 4.101 26 C -0.133 4.133 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.208 0.792 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.253 0.747 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.011 0.989 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.140 0.860 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.736 -18.317 9.236 31.372 hybrid contribution 0.928 0.485 -0.944 1.409 sum -22.809 -17.832 8.292 30.116 Atomic orbital electron populations 1.20105 0.87902 1.02799 1.02125 1.20649 0.96418 0.90509 1.12235 1.22101 0.81371 1.00400 1.04023 1.44010 1.06131 1.03657 1.62817 1.21391 0.87255 0.94231 0.96223 1.21935 0.96458 1.00416 0.99409 1.20915 0.84444 0.81360 0.83165 1.90717 1.66454 1.56747 1.32828 1.46007 1.32537 1.48231 1.09796 1.21236 0.87497 0.92677 0.98081 1.21600 0.98396 1.00214 0.93822 1.18947 0.92879 0.93768 0.95888 1.21654 1.14506 1.27912 0.93989 0.91558 1.26035 0.96828 0.95504 1.01807 1.70101 1.22397 1.31468 1.33457 0.85469 0.77802 0.78332 0.79249 1.19006 1.21175 1.19059 1.18552 0.95958 0.83568 1.04829 1.20282 0.96859 0.92854 1.06487 1.21127 0.97936 0.94133 0.99290 1.20937 0.92202 1.00597 1.03497 1.20527 1.00078 0.90685 0.98799 1.19493 0.92301 0.94220 1.07335 0.91421 0.90744 0.91780 0.79215 0.87967 0.89874 0.87141 0.86045 0.74685 0.93062 0.93215 0.91445 0.91328 0.98920 0.98995 0.92807 0.86029 0.83968 0.83966 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.41 71.24 0.74 -0.10 16 2 C -0.19 -3.34 6.32 -18.62 -0.12 -3.46 16 3 C 0.05 0.74 11.19 83.00 0.93 1.67 16 4 N -0.48 -9.01 2.78 -515.93 -1.43 -10.44 16 5 C 0.13 2.34 5.29 86.38 0.46 2.80 16 6 C -0.14 -2.31 6.02 29.85 0.18 -2.13 16 7 C 0.51 12.85 7.83 87.66 0.69 13.53 16 8 O -0.59 -19.84 15.98 -3.02 -0.05 -19.89 16 9 N -0.71 -17.79 5.56 -463.06 -2.57 -20.36 16 10 C 0.13 4.35 5.67 86.38 0.49 4.84 16 11 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 12 C 0.02 1.17 4.97 29.85 0.15 1.32 16 13 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 14 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 15 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 16 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 17 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 21 C 0.08 1.63 6.81 39.03 0.27 1.89 16 22 C -0.14 -2.81 10.00 22.37 0.22 -2.59 16 23 C -0.11 -1.76 10.01 22.29 0.22 -1.54 16 24 C -0.15 -2.41 9.97 22.03 0.22 -2.19 16 25 C -0.08 -1.44 10.05 22.23 0.22 -1.22 16 26 C -0.13 -2.65 6.35 -20.20 -0.13 -2.78 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.19 1.94 8.06 -2.92 -0.02 1.91 16 31 H 0.10 1.77 8.07 -2.39 -0.02 1.75 16 32 H 0.08 1.68 8.10 -2.38 -0.02 1.66 16 33 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.42 7.67 8.47 -92.71 -0.79 6.89 16 36 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 46 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -72.49 389.75 3.83 -68.66 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.17 Total: 16.15 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 5.40 Total: -23.15 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -3.72 Total: -87.25 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.49 3.83 -68.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181212536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.191 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds