Wall clock time and date at job start Tue Mar 31 2020 11:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34515 * 125.79733 * 2 1 4 4 C 1.41378 * 106.84675 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.83733 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.78947 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47197 * 89.99815 * 6 5 4 8 8 C 1.52997 * 109.46943 * 180.02562 * 7 6 5 9 9 N 1.46908 * 109.46673 * 179.27593 * 8 7 6 10 10 C 1.46900 * 110.99702 * 287.81175 * 9 8 7 11 11 C 1.50700 * 109.47231 * 299.48070 * 10 9 8 12 12 H 1.07998 * 120.00011 * 4.21145 * 11 10 9 13 13 C 1.37878 * 120.00195 * 184.21053 * 11 10 9 14 14 N 1.31513 * 120.00028 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00022 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47258 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47134 * 120.00258 * 15 13 11 18 18 H 1.48501 * 109.46664 * 239.99519 * 15 13 11 19 19 C 1.46905 * 110.99806 * 163.86224 * 9 8 7 20 20 C 1.50693 * 109.47135 * 189.99473 * 19 9 8 21 21 C 1.38669 * 120.42325 * 270.25074 * 20 19 9 22 22 C 1.38622 * 118.42455 * 180.24108 * 21 20 19 23 23 C 1.38234 * 119.16015 * 359.75071 * 22 21 20 24 24 N 1.31850 * 120.75995 * 0.02562 * 23 22 21 25 25 C 1.31883 * 121.73202 * 0.02562 * 24 23 22 26 26 O 1.34302 * 108.42581 * 0.26443 * 5 4 3 27 27 H 1.09000 * 109.46838 * 89.99960 * 1 2 3 28 28 H 1.08999 * 109.46874 * 210.00271 * 1 2 3 29 29 H 1.08998 * 109.46587 * 330.00154 * 1 2 3 30 30 H 1.08004 * 126.57136 * 0.05575 * 3 2 1 31 31 H 1.07992 * 126.57991 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.46845 * 329.99996 * 6 5 4 33 33 H 1.08994 * 109.46937 * 209.99992 * 6 5 4 34 34 H 1.08990 * 109.46983 * 59.99936 * 7 6 5 35 35 H 1.09008 * 109.46814 * 300.00081 * 7 6 5 36 36 H 1.08993 * 109.47723 * 59.27504 * 8 7 6 37 37 H 1.09000 * 109.46760 * 299.26971 * 8 7 6 38 38 H 1.08999 * 109.47066 * 59.47989 * 10 9 8 39 39 H 1.09002 * 109.46770 * 179.48452 * 10 9 8 40 40 H 0.96999 * 120.00751 * 180.02562 * 14 13 11 41 41 H 1.08998 * 109.46968 * 69.99713 * 19 9 8 42 42 H 1.09004 * 109.46487 * 309.99682 * 19 9 8 43 43 H 1.08003 * 120.78436 * 359.97431 * 21 20 19 44 44 H 1.08005 * 120.42487 * 179.73043 * 22 21 20 45 45 H 1.08000 * 119.61831 * 180.02562 * 23 22 21 46 46 H 1.07998 * 119.61848 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0910 0.0000 4 6 3.6310 0.6319 -0.0006 5 6 3.5814 -0.7123 -0.0004 6 6 4.7705 -1.6381 -0.0003 7 6 5.1731 -1.9512 1.4423 8 6 6.3807 -2.8906 1.4423 9 7 6.7779 -3.1773 2.8273 10 6 7.4108 -2.0052 3.4467 11 6 8.6458 -1.6311 2.6685 12 1 8.8948 -2.1632 1.7622 13 6 9.4580 -0.6095 3.1133 14 7 9.1545 0.0388 4.2166 15 14 10.9885 -0.1454 2.1482 16 1 11.1045 -1.0197 0.9536 17 1 10.8909 1.2723 1.7171 18 1 12.1872 -0.3201 3.0073 19 6 7.6632 -4.3479 2.8894 20 6 7.8513 -4.7598 4.3267 21 6 8.8851 -4.2255 5.0808 22 6 9.0228 -4.6373 6.3972 23 6 8.1282 -5.5565 6.9125 24 7 7.1540 -6.0402 6.1672 25 6 6.9933 -5.6719 4.9111 26 8 2.2924 -1.0895 -0.0055 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3632 0.8900 0.5138 30 1 1.9667 2.1203 0.0008 31 1 4.5213 1.2431 -0.0004 32 1 5.6039 -1.1591 -0.5143 33 1 4.5104 -2.5636 -0.5139 34 1 4.3398 -2.4301 1.9562 35 1 5.4332 -1.0255 1.9559 36 1 7.2099 -2.4165 0.9172 37 1 6.1170 -3.8212 0.9399 38 1 6.7111 -1.1694 3.4417 39 1 7.6867 -2.2420 4.4743 40 1 9.7256 0.7577 4.5295 41 1 8.6302 -4.0956 2.4543 42 1 7.2170 -5.1708 2.3310 43 1 9.5694 -3.5087 4.6512 44 1 9.8192 -4.2452 7.0125 45 1 8.2283 -5.8821 7.9374 46 1 6.1837 -6.0903 4.3316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207945184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:42 Heat of formation + Delta-G solvation = 38.774152 kcal Electronic energy + Delta-G solvation = -25496.901774 eV Core-core repulsion = 21966.693568 eV Total energy + Delta-G solvation = -3530.208206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.42464 -39.69539 -37.23617 -34.31110 -33.03752 -32.66355 -32.07208 -31.33309 -30.57332 -27.59664 -27.06519 -24.98842 -23.85117 -22.96855 -22.52373 -21.59546 -20.90849 -19.91357 -19.62379 -16.69829 -16.45721 -16.31091 -16.01748 -15.79986 -15.22549 -14.86083 -14.48708 -14.46102 -14.15614 -13.55895 -13.29582 -13.20583 -13.06317 -13.03573 -12.66313 -12.53955 -12.42625 -12.42499 -11.95340 -11.71735 -11.62579 -11.32404 -11.10416 -11.03732 -10.78604 -10.63033 -10.31433 -10.06467 -9.99783 -9.70675 -9.67127 -9.16158 -8.97324 -8.50510 -8.48472 -8.08606 -7.24050 -6.10401 -4.20069 1.61065 1.84124 1.86090 2.76847 3.03061 3.18736 3.28659 3.30164 4.27535 4.32122 4.70856 4.87876 4.94948 5.10416 5.17943 5.19445 5.21061 5.31203 5.32411 5.45339 5.50701 5.54570 5.57356 5.66361 5.71557 5.76921 5.88941 5.89552 5.99370 6.12702 6.15464 6.19620 6.27200 6.30886 6.38420 6.49060 6.67951 6.72958 6.76549 6.84058 6.96183 7.17778 7.25523 7.34450 7.48190 7.83820 7.96957 8.18049 8.22759 8.42260 8.90885 9.46532 10.93885 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.003703 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.790608 B = 7559.605124 C = 9546.905773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.209 4.209 4 C -0.212 4.212 5 C 0.003 3.997 6 C -0.038 4.038 7 C -0.105 4.105 8 C 0.061 3.939 9 N -0.538 5.538 10 C 0.181 3.819 11 C -0.548 4.548 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.886 5.886 15 Si 0.882 3.118 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.101 3.899 20 C -0.108 4.108 21 C -0.048 4.048 22 C -0.178 4.178 23 C 0.082 3.918 24 N -0.497 5.497 25 C 0.103 3.897 26 O -0.176 6.176 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.262 0.738 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.144 0.856 44 H 0.127 0.873 45 H 0.146 0.854 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 -3.959 -5.507 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.228 4.228 4 C -0.232 4.232 5 C -0.047 4.047 6 C -0.076 4.076 7 C -0.143 4.143 8 C -0.067 4.067 9 N -0.261 5.261 10 C 0.056 3.944 11 C -0.587 4.587 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.710 3.290 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.028 4.028 20 C -0.111 4.111 21 C -0.075 4.075 22 C -0.198 4.198 23 C -0.076 4.076 24 N -0.206 5.206 25 C -0.054 4.054 26 O -0.073 6.073 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.162 0.838 44 H 0.145 0.855 45 H 0.163 0.837 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.209 -4.827 -4.757 12.254 hybrid contribution 2.395 1.735 -1.181 3.185 sum -7.814 -3.092 -5.938 10.290 Atomic orbital electron populations 1.20236 0.85497 1.03813 1.03062 1.22338 0.93858 0.84405 1.07450 1.21538 0.92934 0.99132 1.09193 1.21599 0.98124 0.94117 1.09314 1.22566 0.82820 0.94789 1.04499 1.20190 0.90680 0.97141 0.99561 1.21499 0.98167 1.01061 0.93581 1.21916 0.96643 0.97389 0.90782 1.62538 1.40975 1.06323 1.16283 1.19863 0.92476 0.86815 0.95292 1.21714 1.09307 1.17797 1.09900 0.92434 1.24920 0.97630 0.96112 0.94815 1.69954 1.38186 1.22599 1.21662 0.86700 0.83494 0.78554 0.80272 1.19828 1.20944 1.20974 1.20808 0.97417 0.93544 0.91005 1.20819 0.95500 0.96894 0.97859 1.21799 0.96738 0.95597 0.93337 1.22100 1.01352 0.99653 0.96698 1.22559 0.91234 0.94552 0.99207 1.67605 1.20590 1.25838 1.06538 1.22525 0.97225 0.94738 0.90868 1.83945 1.16606 1.35019 1.71740 0.90522 0.90737 0.89641 0.83874 0.83472 0.88834 0.90578 0.91883 0.90701 0.93065 0.93038 0.95243 0.94398 0.92834 0.92713 0.91866 0.83813 0.85482 0.83696 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 36.01 0.38 -0.22 16 2 C -0.03 -0.40 7.32 -35.62 -0.26 -0.66 16 3 C -0.21 -2.81 10.81 -39.70 -0.43 -3.24 16 4 C -0.21 -3.17 10.81 -39.70 -0.43 -3.60 16 5 C 0.00 0.05 6.58 -35.62 -0.23 -0.18 16 6 C -0.04 -0.53 5.75 -27.88 -0.16 -0.69 16 7 C -0.11 -1.75 5.26 -26.73 -0.14 -1.89 16 8 C 0.06 1.06 4.80 -3.82 -0.02 1.05 16 9 N -0.54 -10.65 4.66 -237.51 -1.11 -11.76 16 10 C 0.18 4.32 4.64 -4.98 -0.02 4.30 16 11 C -0.55 -13.69 7.26 -34.44 -0.25 -13.94 16 12 H 0.06 1.43 5.95 -52.49 -0.31 1.11 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -24.60 13.29 55.43 0.74 -23.87 16 15 Si 0.88 20.21 29.54 -169.99 -5.02 15.19 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.10 1.81 4.96 -4.98 -0.02 1.79 16 20 C -0.11 -1.96 4.90 -104.48 -0.51 -2.47 16 21 C -0.05 -0.90 8.07 -39.28 -0.32 -1.22 16 22 C -0.18 -2.91 10.11 -39.44 -0.40 -3.31 16 23 C 0.08 1.29 11.18 -17.55 -0.20 1.09 16 24 N -0.50 -8.61 10.36 -13.25 -0.14 -8.75 16 25 C 0.10 1.76 10.86 -17.55 -0.19 1.57 16 26 O -0.18 -2.69 10.65 5.69 0.06 -2.62 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 31 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.45 6.74 -51.92 -0.35 1.10 16 36 H 0.05 0.98 6.12 -51.93 -0.32 0.66 16 37 H 0.05 0.78 7.81 -51.93 -0.41 0.38 16 38 H 0.03 0.78 6.68 -51.93 -0.35 0.43 16 39 H 0.04 0.99 5.92 -51.93 -0.31 0.68 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.05 1.06 6.57 -51.93 -0.34 0.72 16 42 H 0.06 0.98 7.81 -51.93 -0.41 0.57 16 43 H 0.14 2.94 7.94 -52.48 -0.42 2.52 16 44 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 45 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -29.44 377.99 -10.07 -39.51 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.99 Total: 6.56 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -3.31 Total: -19.96 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.51 Total: -44.37 kcal Atomic # 8 Polarization: -2.69 SS G_CDS: 0.06 Total: -2.62 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.44 -10.07 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207945184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.281 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds